BAC Information

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BAC

Clone NameB6Ng01-080M06
Chromosome14 (Build37)
Map Location 117,465,615 - 117,627,434
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080M06.bB6Ng01-080M06.g
ACCDH895810DH895811
length1,100162
definitionDH895810|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M06, 5' end.DH895811|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,626,324 - 117,627,434)(117,465,615 - 117,465,776)
sequence
gaattcatactctctatgagtcttactgttctcagtcagcttggagctct
tcctaagagtctccatccgtcacatgccaaaacaaaagagacagaaggaa
tccatagactaagagtttacattccattttattattctttcccttcaaag
tacaaagtaaagtggaatcacctataacctaatgtgaataatagcacatt
gttattaattgtgtacttaatatgtgtcagtactgtattaacgtctctct
ctgctgctttctctgtgtgtctctgtctctctctccctctctgcctcttt
atatctctgtctctttccttccttctctcatatattctgcttaaacctca
tttgtcatttctcttatagataggaaaagttaaatattgttgaaagtgtt
tttattttattttttttttattttattttttgagacagggtttctctgta
tagccctagctgtcctggaactcactctgtagaccaggctggcctcgatc
tcagaaacccgcctgcctctgcctcccgagtgctgggattaaaggtgtgc
gccaccactgcctggcttttgttgaaagtcttgaggggaaagcacagcac
tattctttttgattacctctagatgctaagctttaacctagatgagttgg
aagatagcacaagctgaaatgttatccaggacataaaggcctgattctct
gaaggtgctagtgaaaacatggtttcattctggcctggaattggaccagt
gctttgctttctaaactcagggcaggcaggttggacctcatagtgactca
cgcatgtgtgttcacctggggatagatgtggggacatggaatatgtaact
tgttagagtcctaaatgaggtctgaaaggagtattgtaaaggtgccttgg
aaatggtctccaggtgatttgtagaagtcctggatctattagcctgagtc
tgtcaaatttctgtgagctcagcatgctgttgatttatcttggtgactca
tctcctcctctttggagttttaaatatgcatttgggttctgcaggactgg
cactaaagttgctgtctacacttttcgaatagatgcctcttccacaaaat

actacctaagagggcgtctggatatttggggatttttcttaaaggatcag
actcaaagatttatacttcattcaaaagaaggtagaaaattgacccccac
attagaatcctaaaagaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117626324_117627434
seq2: B6Ng01-080M06.b_44_1143 (reverse)

seq1  ATTTTGTTGGAGAGGCATCTACTCTGAAAAGTGTAGACAGGCAACTTTAG  50
      ||||||| | ||||||||||| || |||||||||||||| ||||||||||
seq2  ATTTTGTGGAAGAGGCATCTATTC-GAAAAGTGTAGACA-GCAACTTTAG  48

seq1  TGCCAGTCCCTTGCAAGAAACCCAAATGCATTATTTAAAACTTCCAAAGG  100
      |||||||||  ||||   |||||||||||| |||||||||| ||||||| 
seq2  TGCCAGTCC--TGCA--GAACCCAAATGCA-TATTTAAAAC-TCCAAAGA  92

seq1  AGAGGAGATGAGTCACCAAGAATAAATCAACAGCATGCTGAGCTCACAGA  150
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAGGAGATGAGTCACCAAG-ATAAATCAACAGCATGCTGAGCTCACAGA  141

seq1  AATTTGACAGACCTCAGGCTAATAGATCCAGGACTTCTACAAAATCACCT  200
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  AATTTGACAGA-CTCAGGCTAATAGATCCAGGACTTCTAC-AAATCACCT  189

seq1  GGAGACCATTTCCAAGGCACCTTTACAATACTCCTTTCAGACCTCATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCATTTCCAAGGCACCTTTACAATACTCCTTTCAGACCTCATTTA  239

seq1  GGACTCTAACAAGTTACATATTCCATGTCCCCACATCTATCCCCAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTAACAAGTTACATATTCCATGTCCCCACATCTATCCCCAGGTGA  289

seq1  ACACACATGCGTGAGTCACTATGAGGTCCAACCTGCCTGCCCTGAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGCGTGAGTCACTATGAGGTCCAACCTGCCTGCCCTGAGTTTA  339

seq1  GAAAGCAAAGCACTGGTCCAATTCCAGGCCAGAATGAAACCATGTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAAGCACTGGTCCAATTCCAGGCCAGAATGAAACCATGTTTTCA  389

seq1  CTAGCACCTTCAGAGAATCAGGCCTTTATGTCCTGGATAACATTTCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCTTCAGAGAATCAGGCCTTTATGTCCTGGATAACATTTCAGCT  439

seq1  TGTGCTATCTTCCAACTCATCTAGGTTAAAGCTTAGCATCTAGAGGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATCTTCCAACTCATCTAGGTTAAAGCTTAGCATCTAGAGGTAAT  489

seq1  CAAAAAGAATAGTGCTGTGCTTTCCCCTCAAGACTTTCAACAAAAGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAATAGTGCTGTGCTTTCCCCTCAAGACTTTCAACAAAAGCCAG  539

seq1  GCAGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGG  589

seq1  CGGGTTTCTGAGATCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTCTGAGATCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  639

seq1  AGCTAGGGCTATACAGAGAAACCCTGTCTCAAAAAATAAAATAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGGCTATACAGAGAAACCCTGTCTCAAAAAATAAAATAAAAAAAA  689

seq1  AATAAAATAAAAACACTTTCAACAATATTTAACTTTTCCTATCTATAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAAAACACTTTCAACAATATTTAACTTTTCCTATCTATAAGA  739

seq1  GAAATGACAAATGAGGTTTAAGCAGAATATATGAGAGAAGGAAGGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACAAATGAGGTTTAAGCAGAATATATGAGAGAAGGAAGGAAAGA  789

seq1  GACAGAGATATAAAGAGGCAGAGAGGGAGAGAGAGACAGAGACACACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGATATAAAGAGGCAGAGAGGGAGAGAGAGACAGAGACACACAGA  839

seq1  GAAAGCAGCAGAGAGAGACGTTAATACAGTACTGACACATATTAAGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGCAGAGAGAGACGTTAATACAGTACTGACACATATTAAGTACA  889

seq1  CAATTAATAACAATGTGCTATTATTCACATTAGGTTATAGGTGATTCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATAACAATGTGCTATTATTCACATTAGGTTATAGGTGATTCCAC  939

seq1  TTTACTTTGTACTTTGAAGGGAAAGAATAATAAAATGGAATGTAAACTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGTACTTTGAAGGGAAAGAATAATAAAATGGAATGTAAACTCT  989

seq1  TAGTCTATGGATTCCTTCTGTCTCTTTTGTTTTGGCATGTGACGGATGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATGGATTCCTTCTGTCTCTTTTGTTTTGGCATGTGACGGATGGA  1039

seq1  GACTCTTAGGAAGAGCTCCAAGCTGACTGAGAACAGTAAGACTCATAGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTAGGAAGAGCTCCAAGCTGACTGAGAACAGTAAGACTCATAGAG  1089

seq1  AGTATGAATTC  1111
      |||||||||||
seq2  AGTATGAATTC  1100

seq1: chr14_117465615_117465776
seq2: B6Ng01-080M06.g_75_236

seq1  ACTACCTAAGAGGGCGTCTGGATATTTGGGGATTTTTCTTAAAGGATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTAAGAGGGCGTCTGGATATTTGGGGATTTTTCTTAAAGGATCAG  50

seq1  ACTCAAAGATTTATACTTCATTCAAAAGAAGGTAGAAAATTGACCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGATTTATACTTCATTCAAAAGAAGGTAGAAAATTGACCCCCAC  100

seq1  ATTAGAATCCTAAAAGAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATCCTAAAAGAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150

seq1  GTGTGTGTGTGC  162
      ||||||||||||
seq2  GTGTGTGTGTGC  162