BAC Information

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BAC

Clone NameB6Ng01-080N13
Chromosome14 (Build37)
Map Location 80,226,225 - 80,355,525
singlet/doubletdoublet
Overlap geneEG629734
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneOlfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080N13.bB6Ng01-080N13.g
ACCDH895868DH895869
length1,1561,103
definitionDH895868|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N13, 5' end.DH895869|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,354,352 - 80,355,525)(80,226,225 - 80,227,331)
sequence
gaattcccacaagaacacaactcaagctgtaagagctccacatgataaca
acatcccaggacatgggatctcgtgacaataagcaaaaacaaaaagatca
ctggtcatggaaaggaaatgtggcaaactgtaggactgaagaaacagtta
tcaacagatccaccccagaacatttgaaacacaaatattcagaccaccca
agaaaaacaccctacaaagacatgggactcaaactccactaagaaagcat
cttacctcagtaggaaaggcaaccatgacagaaacatgctaatgagaatt
tggacaagggaatctttgtacactgctgggcagaatgcaaagtaacccag
cctgtacggaagtcagtatggagtttcttcaaagactaaaatggaagttc
cataagacccagctgtggtatgcttgaatatttaacccaaaggacttgag
tcaacttggcacagagatgcctgcacatcaggcttattgcaggactattc
acaatactcattatgcaaccaacctagatatccaacagaggaatggataa
aacaaatgtggtatccataattaacggacatttttcagctataaaattga
atgaagccatttgcaagaaaaatagagacatatgaaaataacaatagtaa
gataattaaggtagactcagaaagacaaatgttttctctcatttctaact
ctagattctatatagattcataaaatcatgtatgtttatgtggcataaaa
tagacatggaactgggaacaaagaggattaatgagagggagttggggcta
tggggaaaaatgtgttcatcatgcaatatatactttatgaaaaaacttaa
ttttaagctatatatataatcatatatatatatatatataattttttaat
gaaagaaagaaaatacatgttggagacacaaaataaattctcaaacctat
ttgtcagaaaaatatatttgaaattaaagcccaaaagaaacctcagtaat
agcttatatctgggaaataataacaatagtgatgaacatttgcaaacttc
atactacagacaaaaattgaaattgctatgagaccagagtgcagttgaag
gggactttcataactattaagctgcgaaggaagagaagacaggaagagct
atttac
gaattcttatgttcctgagtggcagaaaatatggcaattttagacacgct
ggtgaacatgcctcaagaggctaccatgactgatagtcctcagcacaagg
aactgcccaaatccctgagggttcctgtctcttttctgtatgttgctacc
actaactttgtgtttctcaggaaaatgaatatagcctagcagtaagagta
gcctggacaggcatggcatttactgagtgtaagaggcaagggtcttcttc
cttataaattggtagaaaccttctccccaaaaggatcatgacatctcctt
gtctaagtatctttaggcaataaaacacactgtttattggcagtcttttc
atgcattcaaaagcacaggagctaaaacaattggtattgttgggagaagc
agtcattcaggtgatattagtagatgctatcatcagatgaatctaaccat
gagagatatcatttctccttgtatttgtcagttttcagttgctgtaagga
aatgcccaaggctgggtactttggaaagagtagagaaagaaaagaggttt
ttacttagcttatagttccggtggttaaatattgaagaccatgtgaactt
cttggattggtctgtcgtaagtacctccatggctgtgtcacaagaataaa
gggaaacaaagtcacagcagtgtgcagaagaagtcaattggaaaaatggg
agaccagacagagaaagtgggcaggaccagtcttatgttattcatccctt
cttgaggaaagtaaccagcatcttgtgataagtacatgaatcccatctaa
ggataattctttgcagtgacctatcaccttaaaggatccaccatttctta
atattggcattcttggggccaaacttctgagcgcattgagaggacccact
caagccatatctgtggtggtttcaatatgcttggcccagggagtgcactg
ttagcagtgtggccttgttggaggaagtgtgtcactttggggggtgggtt
tggagactctcttctagctgctttgaagcaaccttttctgctgcctttgg
atcaaaaagccgaatttcagctcccttcggcggcaccgtggttgcctaga
cgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80354352_80355525
seq2: B6Ng01-080N13.b_48_1203 (reverse)

seq1  GTAATTAGCTCTTCTCTGTCTTCTTCTTCCTTCTGCAGCTTTAATTAGTA  50
      |||| ||||||||| |||||||| ||||||||| |||||||  | |||| 
seq2  GTAAATAGCTCTTC-CTGTCTTC-TCTTCCTTC-GCAGCTT--AATAGT-  44

seq1  TATGAAAGTCCACTTCAAACTGCACTCTGGGTCTCATAAGCAATTTTCAA  100
      ||||||||||| |||| ||||||||||| |||||||| ||||| ||||||
seq2  TATGAAAGTCCCCTTC-AACTGCACTCT-GGTCTCAT-AGCAA-TTTCAA  90

seq1  TTTTTGTCCTTGTAGGTATGAAGTTTTGCAAATTGTTCATCACTATTGTT  150
      ||||||||  |||| |||||||| |||||||| |||||||||||||||||
seq2  TTTTTGTC--TGTA-GTATGAAG-TTTGCAAA-TGTTCATCACTATTGTT  135

seq1  ATTATTTCCCAGATATAAGCTATTACTGAGGTTATCTTTTGGGCTTTAAT  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTATTTCCCAGATATAAGCTATTACTGAGGTT-TCTTTTGGGCTTTAAT  184

seq1  TTCAAATATATTTTTCCTGACAAATAGGTTTGAGAATTTATTTTTGTGTC  250
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TTCAAATATATTTTT-CTGACAAATAGGTTTGAGAATTTA-TTTTGTGTC  232

seq1  TCCAACATGTATTTTCTTTCTTTCATTAAAAAATTATATATATATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATGTATTTTCTTTCTTTCATTAAAAAATTATATATATATATATA  282

seq1  TATGATTATATATATAGCTTAAAATTAAGTTTTTTCATAAAGTATATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTATATATATAGCTTAAAATTAAGTTTTTTCATAAAGTATATATT  332

seq1  GCATGATGAACACATTTTTCCCCATAGCCCCAACTCCCTCTCATTAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATGAACACATTTTTCCCCATAGCCCCAACTCCCTCTCATTAATCC  382

seq1  TCTTTGTTCCCAGTTCCATGTCTATTTTATGCCACATAAACATACATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTCCCAGTTCCATGTCTATTTTATGCCACATAAACATACATGAT  432

seq1  TTTATGAATCTATATAGAATCTAGAGTTAGAAATGAGAGAAAACATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATCTATATAGAATCTAGAGTTAGAAATGAGAGAAAACATTTGT  482

seq1  CTTTCTGAGTCTACCTTAATTATCTTACTATTGTTATTTTCATATGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAGTCTACCTTAATTATCTTACTATTGTTATTTTCATATGTCTC  532

seq1  TATTTTTCTTGCAAATGGCTTCATTCAATTTTATAGCTGAAAAATGTCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTTGCAAATGGCTTCATTCAATTTTATAGCTGAAAAATGTCCG  582

seq1  TTAATTATGGATACCACATTTGTTTTATCCATTCCTCTGTTGGATATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATGGATACCACATTTGTTTTATCCATTCCTCTGTTGGATATCTA  632

seq1  GGTTGGTTGCATAATGAGTATTGTGAATAGTCCTGCAATAAGCCTGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTGCATAATGAGTATTGTGAATAGTCCTGCAATAAGCCTGATGT  682

seq1  GCAGGCATCTCTGTGCCAAGTTGACTCAAGTCCTTTGGGTTAAATATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATCTCTGTGCCAAGTTGACTCAAGTCCTTTGGGTTAAATATTCA  732

seq1  AGCATACCACAGCTGGGTCTTATGGAACTTCCATTTTAGTCTTTGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACCACAGCTGGGTCTTATGGAACTTCCATTTTAGTCTTTGAAGAA  782

seq1  ACTCCATACTGACTTCCGTACAGGCTGGGTTACTTTGCATTCTGCCCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATACTGACTTCCGTACAGGCTGGGTTACTTTGCATTCTGCCCAGC  832

seq1  AGTGTACAAAGATTCCCTTGTCCAAATTCTCATTAGCATGTTTCTGTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACAAAGATTCCCTTGTCCAAATTCTCATTAGCATGTTTCTGTCAT  882

seq1  GGTTGCCTTTCCTACTGAGGTAAGATGCTTTCTTAGTGGAGTTTGAGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCTTTCCTACTGAGGTAAGATGCTTTCTTAGTGGAGTTTGAGTCC  932

seq1  CATGTCTTTGTAGGGTGTTTTTCTTGGGTGGTCTGAATATTTGTGTTTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTTGTAGGGTGTTTTTCTTGGGTGGTCTGAATATTTGTGTTTCA  982

seq1  AATGTTCTGGGGTGGATCTGTTGATAACTGTTTCTTCAGTCCTACAGTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTGGGGTGGATCTGTTGATAACTGTTTCTTCAGTCCTACAGTTT  1032

seq1  GCCACATTTCCTTTCCATGACCAGTGATCTTTTTGTTTTTGCTTATTGTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATTTCCTTTCCATGACCAGTGATCTTTTTGTTTTTGCTTATTGTC  1082

seq1  ACGAGATCCCATGTCCTGGGATGTTGTTATCATGTGGAGCTCTTACAGCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGATCCCATGTCCTGGGATGTTGTTATCATGTGGAGCTCTTACAGCT  1132

seq1  TGAGTTGTGTTCTTGTGGGAATTC  1174
      ||||||||||||||||||||||||
seq2  TGAGTTGTGTTCTTGTGGGAATTC  1156

seq1: chr14_80226225_80227331
seq2: B6Ng01-080N13.g_71_1173

seq1  GAATTCTTATGTTCCTGAGTGGCAGAAAATATGGCAATTTTAGACACGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGTTCCTGAGTGGCAGAAAATATGGCAATTTTAGACACGCT  50

seq1  GGTGAACATGCCTCAAGAGGCTACCATGACTGATAGTCCTCAGCACAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACATGCCTCAAGAGGCTACCATGACTGATAGTCCTCAGCACAAGG  100

seq1  AACTGCCCAAATCCCTGAGGGTTCCTGTCTCTTTTCTGTATGTTGCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCCAAATCCCTGAGGGTTCCTGTCTCTTTTCTGTATGTTGCTACC  150

seq1  ACTAACTTTGTGTTTCTCAGGAAAATGAATATAGCCTAGCAGTAAGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTTTGTGTTTCTCAGGAAAATGAATATAGCCTAGCAGTAAGAGTA  200

seq1  GCCTGGACAGGCATGGCATTTACTGAGTGTAAGAGGCAAGGGTCTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGACAGGCATGGCATTTACTGAGTGTAAGAGGCAAGGGTCTTCTTC  250

seq1  CTTATAAATTGGTAGAAACCTTCTCCCCAAAAGGATCATGACATCTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAATTGGTAGAAACCTTCTCCCCAAAAGGATCATGACATCTCCTT  300

seq1  GTCTAAGTATCTTTAGGCAATAAAACACACTGTTTATTGGCAGTCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGTATCTTTAGGCAATAAAACACACTGTTTATTGGCAGTCTTTTC  350

seq1  ATGCATTCAAAAGCACAGGAGCTAAAACAATTGGTATTGTTGGGAGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCAAAAGCACAGGAGCTAAAACAATTGGTATTGTTGGGAGAAGC  400

seq1  AGTCATTCAGGTGATATTAGTAGATGCTATCATCAGATGAATCTAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCAGGTGATATTAGTAGATGCTATCATCAGATGAATCTAACCAT  450

seq1  GAGAGATATCATTTCTCCTTGTATTTGTCAGTTTTCAGTTGCTGTAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATATCATTTCTCCTTGTATTTGTCAGTTTTCAGTTGCTGTAAGGA  500

seq1  AATGCCCAAGGCTGGGTACTTTGGAAAGAGTAGAGAAAGAAAAGAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCAAGGCTGGGTACTTTGGAAAGAGTAGAGAAAGAAAAGAGGTTT  550

seq1  TTACTTAGCTTATAGTTCCGGTGGTTAAATATTGAAGACCATGTGAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGCTTATAGTTCCGGTGGTTAAATATTGAAGACCATGTGAACTT  600

seq1  CTTGGATTGGTCTGTCGTAAGTACCTCCATGGCTGTGTCACAAGAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTGGTCTGTCGTAAGTACCTCCATGGCTGTGTCACAAGAATAAA  650

seq1  GGGAAACAAAGTCACAGCAGTGTGCAGAAGAAGTCAATTGGAAAAATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACAAAGTCACAGCAGTGTGCAGAAGAAGTCAATTGGAAAAATGGG  700

seq1  AGACCAGACAGAGAAAGTGGGCAGGACCAGTCTTATGTTATTCATCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGACAGAGAAAGTGGGCAGGACCAGTCTTATGTTATTCATCCCTT  750

seq1  CTTGAGGAAAGTAACCAGCATCTTGTGATAAGTACATGAATCCCATCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGAAAGTAACCAGCATCTTGTGATAAGTACATGAATCCCATCTAA  800

seq1  GGATAATTC-TTGCAGTGACCTATCACCTTAAAGGATCCACCATTTCTTA  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATTCTTTGCAGTGACCTATCACCTTAAAGGATCCACCATTTCTTA  850

seq1  ATATTGGCATTCTTGGGGCCAAACTTCTGAGCGCATTGAGAGGACCCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGCATTCTTGGGGCCAAACTTCTGAGCGCATTGAGAGGACCCACT  900

seq1  CAAGCCATATCTGTGGTGGTTTCAATATGCTTGGCCCAGGGAGTGGCACT  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAGCCATATCTGTGGTGGTTTCAATATGCTTGGCCCAGGGAGT-GCACT  949

seq1  GTTAGCAGGTGTGGCCTTGTTGGAGGAAGTGTGTCACTTT-GGGGGTGGG  998
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  GTTAGCA-GTGTGGCCTTGTTGGAGGAAGTGTGTCACTTTGGGGGGTGGG  998

seq1  TTTGGAGACTCTCCTCCTAGCTGCCTATGAGGCAACCCTTTTCTGGCTGC  1048
      |||||||||||| || ||||||| || ||| |||| |||||||| |||||
seq2  TTTGGAGACTCT-CTTCTAGCTG-CTTTGAAGCAA-CCTTTTCT-GCTGC  1044

seq1  CTTTGGATCAAGATGCCGAATTCTCAGCT-CCTTCTGCGGCACCGTGTTT  1097
      ||||||||||| | |||||||| |||||| ||||| ||||||||||| ||
seq2  CTTTGGATCAAAAAGCCGAATT-TCAGCTCCCTTCGGCGGCACCGTGGTT  1093

seq1  GCCTAGACGC  1107
      ||||||||||
seq2  GCCTAGACGC  1103