BAC Information

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BAC

Clone NameB6Ng01-081C16
Chromosome14 (Build37)13 (Build37)
Map Location 109,951,404 - 109,952,62024,401,885 - 24,402,238
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081C16.bB6Ng01-081C16.g
ACCDH896096DH896097
length1,203500
definitionDH896096|Mus musculus domesticus DNA, BAC clone: B6Ng01-081C16, 5' end.DH896097|Mus musculus domesticus DNA, BAC clone: B6Ng01-081C16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,951,404 - 109,952,620)(24,401,885 - 24,402,238)
sequence
gaattcacgtatgtttcaatacacaattgctccccaagagcatccattgc
ataaacgactttttatatgagacctaatttcaagtgaaatgttatttttt
gaagtcttcattgaatataaacaagtatcttagagtatcctgtgatactt
tcacctcatttcatgaatctacaagagaacaaggcaaaggaagctttagc
acacatagaagaaaggttaataaaacatgactatggagcaagttgacgtg
atgcagacacagggtggagctatactgcttaactcctggtggcagaagtt
ggctctttagaatcttataccctttcttatcagagctcggtgatatacat
ggtaaaacgtcctagtctgtacttcgaactaatccggaaagacatttatg
tattaaaacataattgaattaggtgatggatacaatcagagacatgggga
ttcattcgcatggactccaccaattgagttatcttgtcattcacctttcc
atgagtactctagcaaaatatttcataacctaattacaccagagtattgt
atagattttacccatgtcataggaaagagaacagagaactatcaaatgca
aatgtgtgggtcccaagaacaatgatgaacttatagcactaacccagcga
gagtgctgaggccatcttctagtctgaaaatctgtagaacttttgtttag
acaactattcacagtagtcaatcatggtacttggttgatactgttttaac
atattgaataatttttagcatgtgttagcaaaacatgtatgagcagaaag
agaatgaacgttcaatgccattttctggcaatatgttaaaatgaaaagca
atttggaagatcactctctctcttcaacttcctacatgacttcgtgacaa
ttaatagtttttgtctcctttctgttctcacataggatatctcctattga
ttaagtttaaatcctcctacatttctctgacttcatattatattgataga
gagactcaatggttaattccagaacaaagttattcagtaggtagtcataa
tctacatctagatgtacattttaaaattaatgcagttatatgttggatca
taatattcatatagccatggattaatattttcctagatgtatgtttgtcc
aaatgagcatcgaagaactggatgactaccctgtttattcttgtcagtcc
tga
tctgtttagttctaaaccccattttttgattaggttgttttatttttttt
gaaagttagcttcttgagttctatatattctggatatcagccctctatca
ggtgtggggttagtaaagatactttttcccaatccgtaggtttctgattt
gtcatattggctatttccctcgtcttacaaaagcttttcatttttcatga
ggtcccatttatcaatttttgatgttagagtgtgagccattggatttctg
tttaggaaagccccccctctcctgaccaccatgcccatgagtttgaggct
ttttccccctttctctttcattagattcagtgtatctggtttaatgttga
ggtccttgatttacttggatttgggctttgtgcaagttgacaaatataaa
tctattttcattttctacagactgccatttagaccagcaccatttattga
aaatattttctttcctttcttttttttttttggggggggggggctttttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109951404_109952620
seq2: B6Ng01-081C16.b_47_1249

seq1  GAATTCACGTATGTTTCAATACACAATTGCTCCCCAAGAGCATCCATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGTATGTTTCAATACACAATTGCTCCCCAAGAGCATCCATTGC  50

seq1  ATAAACGACTTTTTATATGAGACCTAATTTCAAGTGAAATGTTATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGACTTTTTATATGAGACCTAATTTCAAGTGAAATGTTATTTTTT  100

seq1  GAAGTCTTCATTGAATATAAACAAGTATCTTAGAGTATCCTGTGATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTCATTGAATATAAACAAGTATCTTAGAGTATCCTGTGATACTT  150

seq1  TCACCTCATTTCATGAATCTACAAGAGAACAAGGCAAAGGAAGCTTTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCATTTCATGAATCTACAAGAGAACAAGGCAAAGGAAGCTTTAGC  200

seq1  ACACATAGAAGAAAGGTTAATAAAACATGACTATGGAGCAAGTTGACGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGAAGAAAGGTTAATAAAACATGACTATGGAGCAAGTTGACGTG  250

seq1  ATGCAGACACAGGGTGGAGCTATACTGCTTAACTCCTGGTGGCAGAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACACAGGGTGGAGCTATACTGCTTAACTCCTGGTGGCAGAAGTT  300

seq1  GGCTCTTTAGAATCTTATACCCTTTCTTATCAGAGCTCGGTGATATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTAGAATCTTATACCCTTTCTTATCAGAGCTCGGTGATATACAT  350

seq1  GGTAAAACGTCCTAGTCTGTACTTCGAACTAATCCGGAAAGACATTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAACGTCCTAGTCTGTACTTCGAACTAATCCGGAAAGACATTTATG  400

seq1  TATTAAAACATAATTGAATTAGGTGATGGATACAATCAGAGACATGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAACATAATTGAATTAGGTGATGGATACAATCAGAGACATGGGGA  450

seq1  TTCATTCGCATGGACTCCACCAATTGAGTTATCTTGTCATTCACCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCGCATGGACTCCACCAATTGAGTTATCTTGTCATTCACCTTTCC  500

seq1  ATGAGTACTCTAGCAAAATATTTCATAACCTAATTACACCAGAGTATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACTCTAGCAAAATATTTCATAACCTAATTACACCAGAGTATTGT  550

seq1  ATAGATTTTACCCATGTCATAGGAAAGAGAACAGAGAACTATCAAATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTTACCCATGTCATAGGAAAGAGAACAGAGAACTATCAAATGCA  600

seq1  AATGTGTGGGTCCCAAGAACAATGATGAACTTATAGCACTAACCCAGCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGGGTCCCAAGAACAATGATGAACTTATAGCACTAACCCAGCGA  650

seq1  GAGTGCTGAGGCCATCTTCTAGTCTGAAAATCTGTAGAACTTTTGTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGAGGCCATCTTCTAGTCTGAAAATCTGTAGAACTTTTGTTTAG  700

seq1  ACAACTATTCACAGTAGTCAATCATGGTACTTGGTTGATACTGTTTTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTATTCACAGTAGTCAATCATGGTACTTGGTTGATACTGTTTTAAC  750

seq1  ATATTGAATAATTTTTAGCATGTGTTAGCAAAACATGTATGAGCAGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAATAATTTTTAGCATGTGTTAGCAAAACATGTATGAGCAGAAAG  800

seq1  AGAATGAACGTTCAATGCCATTTTCTGGCAATATGTTAAAATGAAAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAACGTTCAATGCCATTTTCTGGCAATATGTTAAAATGAAAAGCA  850

seq1  ATTTGGAAGATCACTCTCTCTCTTCAACTTCCTACATGACTTCGTGACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAGATCACTCTCTCTCTTCAACTTCCTACATGACTTCGTGACAA  900

seq1  TTAATAGTTTTTGTCTCCTTTCTGTTCTCACATAGGATATCTCCTATTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTTTTTGTCTCCTTTCTGTTCTCACATAGGATATCTCCTATTGA  950

seq1  TTAAGTTTAAATCCT-CTACATTTCTCTGACTTCAATATTATATTGATAG  999
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  TTAAGTTTAAATCCTCCTACATTTCTCTGACTTC-ATATTATATTGATAG  999

seq1  AAAGGACTCAAT-GTTAATTCCAGAACAAAGTTATTCAGTAGGTAGTCAT  1048
      | | |||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGA-GACTCAATGGTTAATTCCAGAACAAAGTTATTCAGTAGGTAGTCAT  1048

seq1  AATCTACATCTAGATGTACATTTTATACATTAATGCA-TTATATG-TAGA  1096
      ||||||||||||||||||||||||| | ||||||||| ||||||| | ||
seq2  AATCTACATCTAGATGTACATTTTA-AAATTAATGCAGTTATATGTTGGA  1097

seq1  TCATTAAATATATCATATAGCAATGGATTAATATATATCTAGATGTATGT  1146
      ||||  ||||| ||||||||| |||||||||||| |  ||||||||||||
seq2  TCAT--AATAT-TCATATAGCCATGGATTAATATTTTCCTAGATGTATGT  1144

seq1  TATGTACAAAATGTAGCATCCAGAAGAAACTGGATTTAAACATAACACTG  1196
      | ||| | ||||| ||||||  |||| ||||||||      |  || |||
seq2  T-TGT-CCAAATG-AGCATC--GAAG-AACTGGAT-----GACTACCCTG  1183

seq1  TTTATTTCTTGTCAGTCCTGA  1217
      |||| ||||||||||||||||
seq2  TTTA-TTCTTGTCAGTCCTGA  1203

seq1: chr13_24401885_24402238
seq2: B6Ng01-081C16.g_516_573 (reverse)

seq1  AAAAAAGAAAGAAAATGTTCTTTTATATATGATGCAGCCTTTGGTATTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGCATTGCGATGAATGCTATTATAGTTCCCACATAGTTCTTACACAGTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTGATTTTTAGCATCTTTTATACTGTGATTAAGAAACTATCTTTGGAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGGCAGTGGTGTTGCACGCCTTTAATCCCAGCACTGGGGAGACAGAGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGTGGATTTCTAAGTTCGAGGACAGCCTGGTCTACAAAGTAAGTTCCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGACAGCCAGGACTACACAGAGAAATCCTGTCTCGGAAACCCTCCCCCCC  300
                                           ||     ||||||
seq2  -------------------------------------AAAAAAGCCCCCC  13

seq1  CCCCCCAAAAAAAAGAAAGAAACTATTTTTGGTAAAATATTCTTTTCAAC  350
      |||||||||||||| |||||||        || || | | | ||||||| 
seq2  CCCCCCAAAAAAAAAAAAGAAA--------GGAAAGAAAATATTTTCAA-  54

seq1  TAAA  354
      ||||
seq2  TAAA  58