BAC Information

Click to search

BAC

Clone NameB6Ng01-081J09
Chromosome14 (Build37)
Map Location 112,106,481 - 112,222,223
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494, Slitrk5
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081J09.bB6Ng01-081J09.g
ACCDH896398DH896399
length1,1501,034
definitionDH896398|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J09, 5' end.DH896399|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,221,062 - 112,222,223)(112,106,481 - 112,107,527)
sequence
gaattcaagcagttcctccaattatcctagtatgttaccagactggaagg
atctccaaataggataatgtgtgctaacagaaaggggctcttataagttg
tggcatatcagtctacaggatctgtgtaaaaaaagcaattctaccatggc
attcaatatagagttctaaaaaatatttatatgcgaggtggtcactcaat
ccctctgtttgttactcctttacaaattaaaaataatatattctatttta
tttaattattatgaaaaattatactttatatatgagacatttagcactgc
tgattgggttacagtaagctttcaaataatgttatcattaggttcactca
aactatgcatagaaagcataaactctcaaaacacagatgaaagacaaaga
gtttttagctcaatattctttggtactgtgtccaaaaatatctctcactc
tgtgagctgtaaaaagagtctcatctttctatttagagtgtatgacagag
ctgacatggtgtgtttaagctaaaccactgccagcagtttggaaatacat
taataatattcctttgttctttctcttttcttaactttgggttagtttta
gggacatttcagcattccattttttttaaccttgtttgttataaacttgt
gctgtcttgctctatttcatagctacaacctctacaattttagtccttgc
tttcaaagaaattttggaatttgcaagactgccagttggaataagtaatt
aacacttcagctcagctctgaaaggggaatacaactgtggtgtacagact
cctgccaaagtctgagctatcacccagaaaatgcctgaaattctcatcac
ggtactttgaatatcaccaaaggaaaacagaaaaagggaggcgaaatgat
caacataaaagctcacctgcttgttcccatgggtgtggtacaaatgaagt
ttcagcaaataacagaaatgaaccaatatgtatcagcagaaggattcccg
gccatagggaatcagtggagaatgggaagctacaaatggcattcaatttg
gtggggaggatcaaccaccacaaaatttagtacatggctacatggtaagg
acctagttaaatttgaactctatgaaaacaatcctcggattcataataat

gaattctgtttaatagctattctctaatagctaacattctgacttattcc
tctaaaagcaataatttctgttagtattgtatttgcagaagaaatactaa
tttcatctttttttgtgccttttatgcttgttggtgttcttattttttcc
tccctcctcctttcttttccccttccatttccttttttcctatttcctcc
cccttccttccccagctctgttcccctcccttttccccttgtcatttccc
tcctggcaccctttttcttgcttctcctcttttagatacaatgtttctct
tttttctttcttattgaaactttacactgtagcttgcttttattttatca
aatattatttatgaggaggagatttctattctaggattaattggtttcac
agagtaaagaagtttagagtaaaaaaaattagtcagaatatttggcatgg
ggcaattatcttacatatacataattaacagcaaaatatgatggcaaagg
tcctcataaaaggcagggagattaaagaccaaggcattggatgagggaag
gagatgagtgacatagcaaaggaaaggtgagcttctctagaagcctcagg
aggcactcctcaaaggacttcaggagcacgtgacctttccaatggaatga
ctttaatctatacagtctttcagaaatctgacatcccaaactgtatcaaa
ataaaattgatgtgtaccatggtaagccactaagctcatgatgagtcttc
ccatctacaatagaaaatgaaaatatgttagaaatatatagatatcttgt
tattaaataccctggggttttatttattaatttgaagtatagataaatag
acagttctagaaatagttctaggcaggtactatacgttttgcaatagtaa
aatgtaagaatggttatattaatcatgttattctgtgtaatatatactaa
gtggattttcagttattgactgaagcattgtttgagcttaaatattccca
gaaaataaaacctgccaagtttttatatgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112221062_112222223
seq2: B6Ng01-081J09.b_47_1196 (reverse)

seq1  ATTA-TATGAATTCTGCAGGATTTGTTTTCATAGATGTTTCCAAATTTAA  49
      |||| ||||||| |   |||| ||||||||||||| |||  |||||||||
seq2  ATTATTATGAATCC--GAGGA-TTGTTTTCATAGA-GTT--CAAATTTAA  44

seq1  CTAGGTCCTTACCATGTAGCCATGTACTAAATGTTTTGTGGTAGTTTGAT  99
      |||||||||||||||||||||||||||||||  ||||||||| | |||||
seq2  CTAGGTCCTTACCATGTAGCCATGTACTAAA--TTTTGTGGT-GGTTGAT  91

seq1  CCTCCACATCAAATTTGAATGCCATTTTGTAGCTTCCCATTCTCCACTGG  149
      ||||| || |||| |||||||||| ||||||||||||||||||||||| |
seq2  CCTCCCCACCAAA-TTGAATGCCA-TTTGTAGCTTCCCATTCTCCACT-G  138

seq1  ATTCCCTATGGCCGGGAATCCTTCCTGCTGATACATATTGGTTCATTTCT  199
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTCCCTATGGCCGGGAATCCTT-CTGCTGATACATATTGGTTCATTTCT  187

seq1  GTTATTTGCTGAAACTTCATTTGTACCACACCCATGGGAACAAGCAGGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGCTGAAACTTCATTTGTACCACACCCATGGGAACAAGCAGGTG  237

seq1  AGCTTTTATGTTGATCATTTCGCCTCCCTTTTTCTGTTTTCCTTTGGTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTATGTTGATCATTTCGCCTCCCTTTTTCTGTTTTCCTTTGGTGA  287

seq1  TATTCAAAGTACCGTGATGAGAATTTCAGGCATTTTCTGGGTGATAGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAGTACCGTGATGAGAATTTCAGGCATTTTCTGGGTGATAGCTC  337

seq1  AGACTTTGGCAGGAGTCTGTACACCACAGTTGTATTCCCCTTTCAGAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGGCAGGAGTCTGTACACCACAGTTGTATTCCCCTTTCAGAGCT  387

seq1  GAGCTGAAGTGTTAATTACTTATTCCAACTGGCAGTCTTGCAAATTCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAAGTGTTAATTACTTATTCCAACTGGCAGTCTTGCAAATTCCAA  437

seq1  AATTTCTTTGAAAGCAAGGACTAAAATTGTAGAGGTTGTAGCTATGAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTGAAAGCAAGGACTAAAATTGTAGAGGTTGTAGCTATGAAAT  487

seq1  AGAGCAAGACAGCACAAGTTTATAACAAACAAGGTTAAAAAAAATGGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGACAGCACAAGTTTATAACAAACAAGGTTAAAAAAAATGGAAT  537

seq1  GCTGAAATGTCCCTAAAACTAACCCAAAGTTAAGAAAAGAGAAAGAACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATGTCCCTAAAACTAACCCAAAGTTAAGAAAAGAGAAAGAACAA  587

seq1  AGGAATATTATTAATGTATTTCCAAACTGCTGGCAGTGGTTTAGCTTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATTATTAATGTATTTCCAAACTGCTGGCAGTGGTTTAGCTTAAA  637

seq1  CACACCATGTCAGCTCTGTCATACACTCTAAATAGAAAGATGAGACTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATGTCAGCTCTGTCATACACTCTAAATAGAAAGATGAGACTCTT  687

seq1  TTTACAGCTCACAGAGTGAGAGATATTTTTGGACACAGTACCAAAGAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCTCACAGAGTGAGAGATATTTTTGGACACAGTACCAAAGAATA  737

seq1  TTGAGCTAAAAACTCTTTGTCTTTCATCTGTGTTTTGAGAGTTTATGCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTAAAAACTCTTTGTCTTTCATCTGTGTTTTGAGAGTTTATGCTT  787

seq1  TCTATGCATAGTTTGAGTGAACCTAATGATAACATTATTTGAAAGCTTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCATAGTTTGAGTGAACCTAATGATAACATTATTTGAAAGCTTAC  837

seq1  TGTAACCCAATCAGCAGTGCTAAATGTCTCATATATAAAGTATAATTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCCAATCAGCAGTGCTAAATGTCTCATATATAAAGTATAATTTTT  887

seq1  CATAATAATTAAATAAAATAGAATATATTATTTTTAATTTGTAAAGGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAATTAAATAAAATAGAATATATTATTTTTAATTTGTAAAGGAGT  937

seq1  AACAAACAGAGGGATTGAGTGACCACCTCGCATATAAATATTTTTTAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAGAGGGATTGAGTGACCACCTCGCATATAAATATTTTTTAGAA  987

seq1  CTCTATATTGAATGCCATGGTAGAATTGCTTTTTTTACACAGATCCTGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATATTGAATGCCATGGTAGAATTGCTTTTTTTACACAGATCCTGTA  1037

seq1  GACTGATATGCCACAACTTATAAGAGCCCCTTTCTGTTAGCACACATTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATATGCCACAACTTATAAGAGCCCCTTTCTGTTAGCACACATTAT  1087

seq1  CCTATTTGGAGATCCTTCCAGTCTGGTAACATACTAGGATAATTGGAGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTGGAGATCCTTCCAGTCTGGTAACATACTAGGATAATTGGAGGA  1137

seq1  ACTGCTTGAATTC  1162
      |||||||||||||
seq2  ACTGCTTGAATTC  1150

seq1: chr14_112106481_112107527
seq2: B6Ng01-081J09.g_68_1101

seq1  GAATTCTGTTTAATAGCTATTCTCTAATAGCTAACATTCTGACTTATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAATAGCTATTCTCTAATAGCTAACATTCTGACTTATTCC  50

seq1  TCTAAAAGCAATAATTTCTGTTAGTATTGTATTTGCAGAAGAAATACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGCAATAATTTCTGTTAGTATTGTATTTGCAGAAGAAATACTAA  100

seq1  TTTCATCTTTTTTTGTGCCTTTTATGCTTGTTGGTGTTCTTATTTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTTTTTTTGTGCCTTTTATGCTTGTTGGTGTTCTTATTTTTTCC  150

seq1  TCCCTCCTCCTTTCTTTTCCCCTTCCATTTCCTTTTTTCCTATTTCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTCCTTTCTTTTCCCCTTCCATTTCCTTTTTTCCTATTTCCTCC  200

seq1  CCCTTCCTTCCCCAGCTCTGTTCCCCTCCCTTTTCCCCTTGTCATTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTCCCCAGCTCTGTTCCCCTCCCTTTTCCCCTTGTCATTTCCC  250

seq1  TCCTGGCACCCTTTTTCTTGCTTCTCCTCTTTTAGATACAATGTTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCACCCTTTTTCTTGCTTCTCCTCTTTTAGATACAATGTTTCTCT  300

seq1  TTTTTCTTTCTTATTGAAACTTTACACTGTAGCTTGCTTTTATTTTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCTTATTGAAACTTTACACTGTAGCTTGCTTTTATTTTATCA  350

seq1  AATATTATTTATGAGGAGGAGATTTCTATTCTAGGATTAATTGGTTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTTATGAGGAGGAGATTTCTATTCTAGGATTAATTGGTTTCAC  400

seq1  AGAGTAAAGAAGTTTAGAGTAAAAAAAATTAGTCAGAATATTTGGCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAGAAGTTTAGAGTAAAAAAAATTAGTCAGAATATTTGGCATGG  450

seq1  GGCAATTATCTTACATATACATAATTAACAGCAAAATATGATGGCAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTATCTTACATATACATAATTAACAGCAAAATATGATGGCAAAGG  500

seq1  TCCTCATAAAAGGCAGGGAGATTAAAGACCAAGGCATTGGATGAGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATAAAAGGCAGGGAGATTAAAGACCAAGGCATTGGATGAGGGAAG  550

seq1  GAGATGAGTGACATAGCAAAGGAAAGGTGAGCTTCTCTAGAAGCCTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGTGACATAGCAAAGGAAAGGTGAGCTTCTCTAGAAGCCTCAGG  600

seq1  AGGCACTCCTCAAAGGACTTCAGGAGCACGTGACCTTTCCAATGGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTCCTCAAAGGACTTCAGGAGCACGTGACCTTTCCAATGGAATGA  650

seq1  CTTTAATCTATACAGTCTTTCAGAAATCTGACATCCCAAACTGTATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCTATACAGTCTTTCAGAAATCTGACATCCCAAACTGTATCAAA  700

seq1  ATAAAATTGATGTGTACCATGGTAAGCCACTAAGCTCATGATGAGTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTGATGTGTACCATGGTAAGCCACTAAGCTCATGATGAGTCTTC  750

seq1  CCATCTACAATAGAAAATGAAAATATGTTAGAAATATATAGATATCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTACAATAGAAAATGAAAATATGTTAGAAATATATAGATATCTTGT  800

seq1  TATTAAATATCCTGGGGTTTTATTTAATTAATTTGAAGTATAGATAAACT  850
      ||||||||| ||||||||||||||| |||||||||||||||||||||| |
seq2  TATTAAATACCCTGGGGTTTTATTT-ATTAATTTGAAGTATAGATAAA-T  848

seq1  AGACAGTTCTAGAAATAGTTCTAGGCAGGGTACTATACGTTTTGCAAATA  900
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  AGACAGTTCTAGAAATAGTTCTAGGCA-GGTACTATACGTTTTGC-AATA  896

seq1  GTAAAATGTAAGAATGGTTTATATTAATCATGTTATTCTGTGTAATTATA  950
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  GTAAAATGTAAGAATGG-TTATATTAATCATGTTATTCTGTGTAA-TATA  944

seq1  TACTAAGTTGGATTATCAGTTAATTGACTGAAGCATTGATTGAGCTTAAA  1000
      ||||||| |||||| |||||| |||||||||||||||| |||||||| ||
seq2  TACTAAG-TGGATTTTCAGTT-ATTGACTGAAGCATTGTTTGAGCTT-AA  991

seq1  ATATTCACCAGAAAATAAAACCATGCCAAGTTTTTATATATGTTTTT  1047
      |||||| ||||||||||||||| |||||||||||  |||||||||||
seq2  ATATTC-CCAGAAAATAAAACC-TGCCAAGTTTT--TATATGTTTTT  1034