BAC Information

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BAC

Clone NameB6Ng01-082K17
Chromosome14 (Build37)5 (Build37)
Map Location 84,025,322 - 84,026,598115,355,231 - 115,355,709
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082K17.bB6Ng01-082K17.g
ACCDH897156DH897157
length1,227944
definitionDH897156|Mus musculus domesticus DNA, BAC clone: B6Ng01-082K17, 5' end.DH897157|Mus musculus domesticus DNA, BAC clone: B6Ng01-082K17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,025,322 - 84,026,598)(115,355,231 - 115,355,709)
sequence
gaattctattgatttggaatacattttacaaccaaaaattttgccagatt
acagtctatattaattactcaaaccttgtcttagttttactttctgtgcc
tgtgatgaagtactcctcaataaagatatttcaggaagaaagtataaatt
ggctcaaaattccagatgaaattccattactgggaaagttaaggaagtag
aaatttggaacaactagtcgctttatctcctcaatcaaaagcaaagaaat
taattatcgaatgtgctcctttgactttcttctttttagtagggtttatt
ttagagaattgtgtcccctctagtatatgtgtctccccataacatttaac
ataactgatgcagctccccaataggcatggccacatccaagccaagttga
tccagatattgcctcagtaacattctcttcccacattattatagactgtg
taaagctaacaattaaaaattgccactgagccgggcgtggtggcacatgc
ctttaatcccagcatttgggaggcagaggcaggcagatttctgagttcaa
ggccagcctggtctacagagtgagttccaggacagccagagttacacaga
gaaaccctgtctcaaaaaaacaaaaaacaaaaaacaaaaaaagtaaaaat
tgccagcattttggactaatattgcagttaaaacaaaagtatttatcaca
aagatctgtataaactagttttaactggaatctaacagttcactaattta
cattcattcctctgtgacatcaaatacaattgaaataaactcagtttacc
ttccaattttttaaaaataatgcatgaacgtaaaatgatggatttctttc
caggttgatattgtgataaaagtgcattttcaaaacattaaaacaatgtt
atggaagaaaataaaattgatagtgttttatatatttcacagtatgtcta
ttatatgggagcctatctcacatgaaatgaaaggataactgagtcagtgt
atacaaagaagactatagtatttgagtgcagaagtactattttctataaa
tatgtgatagaaatatggtgctaatacaagcttatagataaatcacacat
acctggtttaaactggatgaccaatttaatcttaagccacctggtttaaa
tgtacactgtctcgattcacatcggttaactaatacgttatggagattag
ctacacattttaagatttcccccagcc
gaattcactcttatgaagattcataattaaaataccaagctgaacatgta
caaattaaaaaaaaaattgtacagattaaggagaaaaggagcataaagaa
gtagaatggagaaaagtcccatgttcaaggagaaacactgattaaaaaaa
aagcagaacagggagtggtgactgtaagaccccaactcaatatatttctt
agacccctagaaacaacgcccaacatggagttctttgttcttttgccttc
agcctgagagaacgatgaccactgcgtgacccatccaggcacctgaccca
tagtgtaagggaccaagaatgtttgccaaagtaacctttccatgagagat
gagctgtaattcaccattcccatttttatgatgtttgatgtttactcagc
ttccccattctttgtggtcttatcctcccctcactttgcagtttattctt
taaccccccccccccctggactgcaactgctgggggtcgatctcctctgt
gagggttactagttcagcctcagcgtgctgattcccgaataaacctaatt
caatattgcaccaaaaacagtttctttctagttattggggcattggctca
tcccgggacttgagtgagggtctccccgaaaccggggtctttcagtgacc
tctgggcaagccaccacctgtggtggtttgtatatgcttggcccagggac
tggtactattaggagttgtggccttgttgaagtagatgtgtcactgtggg
tatgggctttaagattgtcatcctatctgcctggaaatcagtcttctcat
agcagcttccagatgaagatgtagcactctcagctctgtctccaccatac
cttcctggatgtgccatgctctcaccttgataataatgggctggacctct
gaacctataagccagcccaaattaaatattttccttataaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84025322_84026598
seq2: B6Ng01-082K17.b_47_1272

seq1  GAATTCTATTGATTTGGAATACATTTTACAACCAAAAATTTTGCCAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGATTTGGAATACATTTTACAACCAAAAATTTTGCCAGATT  50

seq1  ACAGTCTATATTAATTACTCAAACCTTGTCTTAGTTTTACTTTCTGTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTATATTAATTACTCAAACCTTGTCTTAGTTTTACTTTCTGTGCC  100

seq1  TGTGATGAAGTACTCCTCAATAAAGATATTTCAGGAAGAAAGTATAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGAAGTACTCCTCAATAAAGATATTTCAGGAAGAAAGTATAAATT  150

seq1  GGCTCAAAATTCCAGATGAAATTCCATTACTGGGAAAGTTAAGGAAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAAATTCCAGATGAAATTCCATTACTGGGAAAGTTAAGGAAGTAG  200

seq1  AAATTTGGAACAACTAGTCGCTTTATCTCCTCAATCAAAAGCAAAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGAACAACTAGTCGCTTTATCTCCTCAATCAAAAGCAAAGAAAT  250

seq1  TAATTATCGAATGTGCTCCTTTGACTTTCTTCTTTTTAGTAGGGTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATCGAATGTGCTCCTTTGACTTTCTTCTTTTTAGTAGGGTTTATT  300

seq1  TTAGAGAATTGTGTCCCCTCTAGTATATGTGTCTCCCCATAACATTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAATTGTGTCCCCTCTAGTATATGTGTCTCCCCATAACATTTAAC  350

seq1  ATAACTGATGCAGCTCCCCAATAGGCATGGCCACATCCAAGCCAAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGATGCAGCTCCCCAATAGGCATGGCCACATCCAAGCCAAGTTGA  400

seq1  TCCAGATATTGCCTCAGTAACATTCTCTTCCCACATTATTATAGACTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATATTGCCTCAGTAACATTCTCTTCCCACATTATTATAGACTGTG  450

seq1  TAAAGCTAACAATTAAAAATTGCCACTGAGCCGGGCGTGGTGGCACATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTAACAATTAAAAATTGCCACTGAGCCGGGCGTGGTGGCACATGC  500

seq1  CTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAA  550

seq1  GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGTTACACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGTTACACAGA  600

seq1  GAAACCCTGTCTCAAAAAAACAAAAAACAAAAAACAAAAAAAGTAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCAAAAAAACAAAAAACAAAAAACAAAAAAAGTAAAAAT  650

seq1  TGCCAGCATTTTGGACTAATATTGCAGTTAAAACAAAAGTATTTATCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCATTTTGGACTAATATTGCAGTTAAAACAAAAGTATTTATCACA  700

seq1  AAGATCTGTATAAACTAGTTTTAACTGGAATCTAACAGTTCACTAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGTATAAACTAGTTTTAACTGGAATCTAACAGTTCACTAATTTA  750

seq1  CATTCATTCCTCTGTGACATCAAATACAATTGAAATAAACTCAGTTTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCCTCTGTGACATCAAATACAATTGAAATAAACTCAGTTTACC  800

seq1  TTCCAATTTTTTAAAAATAATGCATGAACGTAAAATGATGGATTTCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTTTTAAAAATAATGCATGAACGTAAAATGATGGATTTCTTTC  850

seq1  CAGGTTGATATTGTGATAAAAGTGCATTTTCAAAACATTAAAACAATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGATATTGTGATAAAAGTGCATTTTCAAAACATTAAAACAATGTT  900

seq1  ATGGAAGAAAATAAAATTGATAGTGTTTTTATAATATTTCACAAGTATGT  950
      ||||||||||||||||||||||||| |||||| ||||||||| |||||||
seq2  ATGGAAGAAAATAAAATTGATAGTG-TTTTAT-ATATTTCAC-AGTATGT  947

seq1  CTATTATATTGGGAGCCTATCTCCACAATGAAATGAAAGGATAACTGAGT  1000
      |||||||| ||||||||||||| ||| |||||||||||||||||||||||
seq2  CTATTATA-TGGGAGCCTATCT-CAC-ATGAAATGAAAGGATAACTGAGT  994

seq1  CAGTGTATACAAAAGGAAGACCTATAGTATTTTGAGTGCAGAAGTACTAT  1050
      |||||||||||||  ||||| |||||||| ||||||||||||||||||||
seq2  CAGTGTATACAAA--GAAGA-CTATAGTA-TTTGAGTGCAGAAGTACTAT  1040

seq1  TTTCTATAAAATTATGTGATTAGAATATATGGTTGCTTACATACAAAGCT  1100
      ||||||||||  ||||||| ||||| |||||| ||||   |||| |||||
seq2  TTTCTATAAA--TATGTGA-TAGAA-ATATGG-TGCT--AATAC-AAGCT  1082

seq1  TATAGATAAAATCCAACCAACATACACTGAGTTTTAAAACT-GATGACAC  1149
      ||||||| |||||  ||  |||||| ||| ||||  ||||| |||||| |
seq2  TATAGAT-AAATC--AC--ACATAC-CTG-GTTT--AAACTGGATGAC-C  1122

seq1  AATTTAAAATCTTAGAGCAAAACTTGTGTATAAATGGTACACTG-CTCGA  1198
      |||||  ||||||| |||   || || || ||||| |||||||| |||||
seq2  AATTT--AATCTTA-AGC--CACCTG-GTTTAAAT-GTACACTGTCTCGA  1165

seq1  ATTCTAAACCATATACTGTTTATCCCATTTAGTGTAATGAGAAGATAAAG  1248
       |       || || | ||| |  | | |  || ||  ||||      ||
seq2  TT-------CACAT-CGGTTAA--CTAATACGT-TATGGAGA----TTAG  1200

seq1  CTTACACATATTTTATAATTTCCCCCAGC  1277
      ||   ||| ||||||  ||||||||||||
seq2  CT---ACACATTTTAAGATTTCCCCCAGC  1226

seq1: chr5_115355231_115355709
seq2: B6Ng01-082K17.g_242_723

seq1  TGTAAGACCCCAACTCAATGTGTTTCTTAGACCCCTAGAAACGAAACCCA  50
      ||||||||||||||||||| | |||||||||||||||||||| |  ||||
seq2  TGTAAGACCCCAACTCAATATATTTCTTAGACCCCTAGAAACAACGCCCA  50

seq1  GCATGGAGTTCTTTGTTCTTTCGCCTTCAGCCTGAGAGAACGATGACCAC  100
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACATGGAGTTCTTTGTTCTTTTGCCTTCAGCCTGAGAGAACGATGACCAC  100

seq1  TGGGTGACCCACCCAGGCGCCTGACCCATAGTGTAAGGGAACAAGAATGT  150
      || |||||||| |||||| ||||||||||||||||||||| |||||||||
seq2  TGCGTGACCCATCCAGGCACCTGACCCATAGTGTAAGGGACCAAGAATGT  150

seq1  TTGCCAAAGATAGCCTGTAACCTTTCCGTGGGAGATGAGCTGTAATTCAC  200
      ||||||||        ||||||||||| || |||||||||||||||||||
seq2  TTGCCAAA--------GTAACCTTTCCATGAGAGATGAGCTGTAATTCAC  192

seq1  TATCCCCATTCTTA-------CGATGTTTACTCAGCTTCCCCATTCTTTG  243
       || |||||| |||        ||||||||||||||||||||||||||||
seq2  CATTCCCATTTTTATGATGTTTGATGTTTACTCAGCTTCCCCATTCTTTG  242

seq1  TGGTCTTATCCTCCCCTCACTTTGTGGTTTATTCTTTAA-------AAAC  286
      ||||||||||||||||||||||||  |||||||||||||          |
seq2  TGGTCTTATCCTCCCCTCACTTTGCAGTTTATTCTTTAACCCCCCCCCCC  292

seq1  CCTCGACTGCAACTGCTGGGGGTCGATCTCCTCTGCCCCTGTGTGGGTTA  336
      ||| ||||||||||||||||||||||||||||      ||||| ||||||
seq2  CCTGGACTGCAACTGCTGGGGGTCGATCTCCT------CTGTGAGGGTTA  336

seq1  TGAGCTCGGCCTCAGCATGCTGATTCCCGAATAAACCTCATGCGATATTG  386
        || || |||||||| ||||||||||||||||||||| || | ||||||
seq2  CTAGTTCAGCCTCAGCGTGCTGATTCCCGAATAAACCTAATTCAATATTG  386

seq1  CATCAAGAACAGTTTCTCTCGAGTTATTGGGATGTTGGCTCATCCCGGGA  436
      || ||| |||||||||| || ||||||||||   ||||||||||||||||
seq2  CACCAAAAACAGTTTCTTTCTAGTTATTGGGGCATTGGCTCATCCCGGGA  436

seq1  CTTGAGCGAGGTTCTCCCCGAAACGGGGGTCTTTCAGT---CTCTG  479
      |||||| |||| |||||||||||| |||||||||||||   |||||
seq2  CTTGAGTGAGGGTCTCCCCGAAACCGGGGTCTTTCAGTGACCTCTG  482