BAC Information

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BAC

Clone NameB6Ng01-082N04
Chromosome14 (Build37)
Map Location 109,650,340 - 109,800,171
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082N04.bB6Ng01-082N04.g
ACCDH897267DH897268
length1,1681,129
definitionDH897267|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N04, 5' end.DH897268|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,650,340 - 109,651,520)(109,799,021 - 109,800,171)
sequence
gaattcaaaaccaagtaaactagtaatattacagcagatgaaagaatcaa
agtataagcttgtaaagacagatggggaaaagtcagtcttcaatgatata
taggtaaactaataagaagaaacaactcttttcatccctagtcacaaatt
gagagcattgaactattattaataagtgtaaaactttttattattaacaa
gtgtaaaacttaaggtaaaggcattggggaacttgaaaatgaaagagaaa
gaagtaagaaagaaatgaaggtaagaaatctacttgcactaataaacaaa
tcacctgagtgagttcactatggaacacaagtagcaagtttgcatgaata
gaactttccattcaagacctgcacaaaagatatacttcactccagcccat
agaatattatccaggatcaacaatgatagtccacagaaacaacaatgcag
tagcttctatcatatatgttttctaactaaaataaaagaagactagaaaa
acaaaacggaaaaatgtaaaaaccactagatacagtgaaattaaagaatt
tacatgaataatgtactaaaacatatattatatagatatagttatagtat
atagtgtatattatatatactgttactaattatacatacacacacacttt
ggaaaaaattgaaaacaagtacaacacactcatgtatgcgatgtaaaaaa
cattgttcgagtaaagttattaaaatgctatataaagacaaacactatat
tactgacatttatacaattagaaaaatatctgacgaaattattatgaaga
gaaaataataaaacttgcaagggtgaatcatctaatgagtgggatctggt
tgagcctgaaagcatttatagacacaattaactaaagagaaaagacccat
tataaatctgtggtagcctctggtcctagattcacttataaagaactcaa
aagtgaacttatttgagacgctttcctttgttccttgctgccagttcaat
gtagtgctgctgcagacacactcacagccctgatactccacatccctaga
gaagacactactaaaggttatgatattataacatgatccaaatgtgtcat
atttcagaaaggattcagctgatgcaggattgtagtctgtggcctgagca
ttcaattgttacttcatc
gaattcattattttgctggtataacttttcagatagatgataaaaacatt
tttaacagtgtgaataaatatgatgattgtaggcaaaaaatataaagcag
tattgagaagtatgtctctaaattgacatttcagaatagttaatttatat
gatatttaaaactcataataagagttctcttacatccttcctcaaatgtt
aaaatcccctcaaatgcggttcaattcttggagcaggaaattgatattag
tacaagtacattaagctacactgtttattcatgatttgagtttgcccatt
tttatttttatttatttatttatttcagagctgagggccaaacccagggt
cttgcgcttgctagcacttgctctaccactgggctaaatctccaaaccct
cccatttttaatttttcttgttgtgattgctgttgctctggagtccagtg
aaaaacgccaagttgtatgtacatttttttgtccttaatattctgccatc
tgtaaaatttgcatagcttttcttttccttttgtgattatccttgatgtt
cttactattttatgggtcatctctccatatatactttctctactatcata
gtttttatgagtttttgtgaagaataccatgaatttactgtttacacatt
ctttttcttatgagagaaaagaaacacaaatctttattgcctatgtactt
cttttgtccattgaaactattaataattccagaagattgtcaactgctat
tagaaactcaccagattaatgttcttcaaatgttttgagtagatgcaaga
atttatttatttatttatttatttatttatttatttatttatttattttc
tgtaaactatctttctttgttaggtattttcttttttttccatttttaat
taggtatttagctcatttacatttccaatgctatacccaaagtccccatc
ccacccatccccactccctaacaacactcccttttggcctggcgtccctg
tactggggcatataaagttgcatgtcaatgggctctctttcagtgatgct
gactaggcatctttgaaacatatgcagctaggtcagagctccgggatctg
tagcctcataatgtttgttcacctatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109650340_109651520
seq2: B6Ng01-082N04.b_50_1217

seq1  GAATTCAAAACCAAGTAAACTAGTAATATTACAGCAGATGAAAGAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCAAGTAAACTAGTAATATTACAGCAGATGAAAGAATCAA  50

seq1  AGTATAAGCTTGTAAAGACAGATGGGGAAAAGTCAGTCTTCAATGATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGCTTGTAAAGACAGATGGGGAAAAGTCAGTCTTCAATGATATA  100

seq1  TAGGTAAACTAATAAGAAGAAACAACTCTTTTCATCCCTAGTCACAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAACTAATAAGAAGAAACAACTCTTTTCATCCCTAGTCACAAATT  150

seq1  GAGAGCATTGAACTATTATTAATAAGTGTAAAACTTTTTATTATTAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATTGAACTATTATTAATAAGTGTAAAACTTTTTATTATTAACAA  200

seq1  GTGTAAAACTTAAGGTAAAGGCATTGGGGAACTTGAAAATGAAAGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAACTTAAGGTAAAGGCATTGGGGAACTTGAAAATGAAAGAGAAA  250

seq1  GAAGTAAGAAAGAAATGAAGGTAAGAAATCTACTTGCACTAATAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGAAAGAAATGAAGGTAAGAAATCTACTTGCACTAATAAACAAA  300

seq1  TCACCTGAGTGAGTTCACTATGGAACACAAGTAGCAAGTTTGCATGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAGTGAGTTCACTATGGAACACAAGTAGCAAGTTTGCATGAATA  350

seq1  GAACTTTCCATTCAAGACCTGCACAAAAGATATACTTCACTCCAGCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCCATTCAAGACCTGCACAAAAGATATACTTCACTCCAGCCCAT  400

seq1  AGAATATTATCCAGGATCAACAATGATAGTCCACAGAAACAACAATGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTATCCAGGATCAACAATGATAGTCCACAGAAACAACAATGCAG  450

seq1  TAGCTTCTATCATATATGTTTTCTAACTAAAATAAAAGAAGACTAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTATCATATATGTTTTCTAACTAAAATAAAAGAAGACTAGAAAA  500

seq1  ACAAAACGGAAAAATGTAAAAACCACTAGATACAGTGAAATTAAAGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACGGAAAAATGTAAAAACCACTAGATACAGTGAAATTAAAGAATT  550

seq1  TACATGAATAATGTACTAAAACATATATTATATAGATATAGTTATAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAATAATGTACTAAAACATATATTATATAGATATAGTTATAGTAT  600

seq1  ATAGTGTATATTATATATACTGTTACTAATTATACATACACACACACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTATATTATATATACTGTTACTAATTATACATACACACACACTTT  650

seq1  GGAAAAAATTGAAAACAAGTACAACACACTCATGTATGCGATGTAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATTGAAAACAAGTACAACACACTCATGTATGCGATGTAAAAAA  700

seq1  CATTGTTCGAGTAAAGTTATTAAAATGCTATATAAAGACAAACACTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCGAGTAAAGTTATTAAAATGCTATATAAAGACAAACACTATAT  750

seq1  TACTGACATTTATACAATTAGAAAAATATCTGACGAAATTATTATGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACATTTATACAATTAGAAAAATATCTGACGAAATTATTATGAAGA  800

seq1  GAAAATAATAAAACTTGCAAGGGTGAATCATCTAATGAGTGGGATCTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATAAAACTTGCAAGGGTGAATCATCTAATGAGTGGGATCTGGT  850

seq1  TGAGCCTGAAAGCATTTATAGACACAATTAACTAAAGAGAAAAAGACCCA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAGCCTGAAAGCATTTATAGACACAATTAACTAAAGAG-AAAAGACCCA  899

seq1  TTATAAATCTGTGGTAGCCTCTGGTCCTAGATTCACTTATAAAGAACTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATCTGTGGTAGCCTCTGGTCCTAGATTCACTTATAAAGAACTCA  949

seq1  AAGGTGAACTTATTTGAGAACGCTTTCCTTTGTTCCTTGCTGCCAAGTTC  1000
      || ||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  AAAGTGAACTTATTTGAG-ACGCTTTCCTTTGTTCCTTGCTGCC-AGTTC  997

seq1  AAATGTAGTTGCTGCTGCAGACAACACTCACAGCCCTGATACTCCACATC  1050
       ||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  -AATGTAG-TGCTGCTGCAGAC-ACACTCACAGCCCTGATACTCCACATC  1044

seq1  CCTTAGAGAAGACACTACTAAAGGTTTATGATATTATAACATGATCCAAA  1100
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CC-TAGAGAAGACACTACTAAAGG-TTATGATATTATAACATGATCCAAA  1092

seq1  TGTGGTCATA-TTCAGAA--GATTTCCAGGCTGGATTGCAGGGGTATGTA  1147
      ||| |||||| |||||||  ||||  || ||||   ||||  ||  ||||
seq2  TGT-GTCATATTTCAGAAAGGATT--CA-GCTG--ATGCA--GGATTGTA  1134

seq1  GTTCTGTGGCCTGAGCA-TCCATTGGTACTTCATC  1181
      | ||||||||||||||| || |||| |||||||||
seq2  G-TCTGTGGCCTGAGCATTCAATTGTTACTTCATC  1168

seq1: chr14_109799021_109800171
seq2: B6Ng01-082N04.g_69_1197 (reverse)

seq1  CCTATAGGTGGAACAACATTATGA-GCTAACCAGTATCCCGGAGCTCTGA  49
      |||||||||| |  |||||||||| ||||  ||| |||||||||||||||
seq2  CCTATAGGTGAACAAACATTATGAGGCTA--CAG-ATCCCGGAGCTCTGA  47

seq1  CTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTGGAAA  99
      | |||||||||||||| || |||||| |||||||||| ||||||| ||||
seq2  C-CTAGCTGCATATGTTTC-AAAGAT-GCCTAGTCAG-CATCACT-GAAA  92

seq1  GAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACG  149
      |||| ||||||| ||||||| ||||||||||||||||||||||||  |||
seq2  GAGA-GCCCATT-GACATGC-AACTTTATATGCCCCAGTACAGGG--ACG  137

seq1  CCAGGGCCAAAAAGGGGGAGTGGTTGGTTAGGGGAGTGGGGATGGGTGGG  199
      ||| ||||||||   |||||||  | |||| |||||||||||||||| ||
seq2  CCA-GGCCAAAA---GGGAGTG--TTGTTA-GGGAGTGGGGATGGGT-GG  179

seq1  GATGGGGGACTTTGGGTATAGCATTGGAAATGTAAATGAGCTAAATACCT  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAT-GGGGACTTTGGGTATAGCATTGGAAATGTAAATGAGCTAAATACCT  228

seq1  AATTAAAAATGGAAAAAAAAAGAAAATACCTAACAAAGAAAGATAGTTTA  299
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAATGG-AAAAAAAAGAAAATACCTAACAAAGAAAGATAGTTTA  277

seq1  CAGAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA  327

seq1  ATTCTTGCATCTACTCAAAACATTTGAAGAACATTAATCTGGTGAGTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCATCTACTCAAAACATTTGAAGAACATTAATCTGGTGAGTTTC  377

seq1  TAATAGCAGTTGACAATCTTCTGGAATTATTAATAGTTTCAATGGACAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCAGTTGACAATCTTCTGGAATTATTAATAGTTTCAATGGACAAA  427

seq1  AGAAGTACATAGGCAATAAAGATTTGTGTTTCTTTTCTCTCATAAGAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACATAGGCAATAAAGATTTGTGTTTCTTTTCTCTCATAAGAAAA  477

seq1  AGAATGTGTAAACAGTAAATTCATGGTATTCTTCACAAAAACTCATAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGTAAACAGTAAATTCATGGTATTCTTCACAAAAACTCATAAAA  527

seq1  ACTATGATAGTAGAGAAAGTATATATGGAGAGATGACCCATAAAATAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATAGTAGAGAAAGTATATATGGAGAGATGACCCATAAAATAGTA  577

seq1  AGAACATCAAGGATAATCACAAAAGGAAAAGAAAAGCTATGCAAATTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCAAGGATAATCACAAAAGGAAAAGAAAAGCTATGCAAATTTTA  627

seq1  CAGATGGCAGAATATTAAGGACAAAAAAATGTACATACAACTTGGCGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCAGAATATTAAGGACAAAAAAATGTACATACAACTTGGCGTTT  677

seq1  TTCACTGGACTCCAGAGCAACAGCAATCACAACAAGAAAAATTAAAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGACTCCAGAGCAACAGCAATCACAACAAGAAAAATTAAAAATG  727

seq1  GGAGGGTTTGGAGATTTAGCCCAGTGGTAGAGCAAGTGCTAGCAAGCGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTTTGGAGATTTAGCCCAGTGGTAGAGCAAGTGCTAGCAAGCGCA  777

seq1  AGACCCTGGGTTTGGCCCTCAGCTCTGAAATAAATAAATAAATAAAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGGGTTTGGCCCTCAGCTCTGAAATAAATAAATAAATAAAAATA  827

seq1  AAAATGGGCAAACTCAAATCATGAATAAACAGTGTAGCTTAATGTACTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGCAAACTCAAATCATGAATAAACAGTGTAGCTTAATGTACTTG  877

seq1  TACTAATATCAATTTCCTGCTCCAAGAATTGAACCGCATTTGAGGGGATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATATCAATTTCCTGCTCCAAGAATTGAACCGCATTTGAGGGGATT  927

seq1  TTAACATTTGAGGAAGGATGTAAGAGAACTCTTATTATGAGTTTTAAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTGAGGAAGGATGTAAGAGAACTCTTATTATGAGTTTTAAATA  977

seq1  TCATATAAATTAACTATTCTGAAATGTCAATTTAGAGACATACTTCTCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAATTAACTATTCTGAAATGTCAATTTAGAGACATACTTCTCAA  1027

seq1  TACTGCTTTATATTTTTTGCCTACAATCATCATATTTATTCACACTGTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTTATATTTTTTGCCTACAATCATCATATTTATTCACACTGTTA  1077

seq1  AAAATGTTTTTATCATCTATCTGAAAAGTTATACCAGCAAAATAATGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTTTATCATCTATCTGAAAAGTTATACCAGCAAAATAATGAAT  1127

seq1  TC  1151
      ||
seq2  TC  1129