BAC Information

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BAC

Clone NameB6Ng01-083K06
Chromosome14 (Build37)
Map Location 93,999,263 - 94,145,160
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083K06.bB6Ng01-083K06.g
ACCDH897847DH897848
length1,098659
definitionDH897847|Mus musculus domesticus DNA, BAC clone: B6Ng01-083K06, 5' end.DH897848|Mus musculus domesticus DNA, BAC clone: B6Ng01-083K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,999,263 - 94,000,373)(94,144,641 - 94,145,160)
sequence
gaattctcctatgtgtgcatgctaatacactgagtgagaaatggcatttc
cagacaagttgttctcccggtgacagctgaattgcactcttccaaatatg
ccaaaacaacagattttcattttgttcaaggacttacatcatcgttaaaa
agcatttgagaatttgttccagtcatcagaaacacagagctgggagagaa
aataaacactgaggtaccaatgtcacacaggatttaaacctttgaaaaag
catgtgcaattacagagaaccttctcacggtaaacagcagaggcaaggtc
ttacaaataaatggagtaggcagcttatgggatgtgattacaggggcaag
ccagatgctcccatctaaaaatatctctccctcctgttacctttagaatt
cattcctttgcatcttctagggttttttgatcagcaagaaacccccatta
aaacgtaaatactcctgggatatgaggagcctcaatctttcacgagctct
ctcttagcagactagttggaatgaaacaagaaatagaacagagatttgga
aaaattaatagagaaatacgataaagggatcacagcagtagagaggagac
cctaaacttggaatttctatattggaacaaatttaccctagatcgatttt
gagtccatgggtgatttataagaaaaaaaaaatgaaattttaaaacagag
aaagggcttcagaaacagaattaaaacactgcagaactaattaaagaatc
attatttttcagaattattctgcatttggaagaattatctagacactaaa
gggataggacagtatccactctatttcctttaagaagtcctgagcagcat
tttttcctcaaagaataaagtcaaatcattaatggaaacaacagtgtcta
ttaaaggatctggggaaatactaattcagatgatgcaaatatacgtatta
ttatattaaaacagaatcatgtatagctgatatagttgtgtgttctcaga
gtcaccaaaactatgccctctgagctgacgttttgtcttctgctgtgatt
tctagtctagttaagtaaggagaatgattgacctagactgtctatgta
gaattccagatatgtttccagggctgtcttagttatggactttattgatg
caaagagtctccataatcatatcaattctgataaaagaaaatatttatgg
gagctggcttatagattcagaggtttagtccatgattgtcatatcaggaa
gtttgacagaatgcagagaaatgtgtttctggaaaggagttgagagatct
acatctgaagaagtacctcagagttcttcatcagaacagcaggcagtagg
aagaaaaagagccattgagtctggtttgagcccctgaaacctcaaaacct
actctccgtgatagggttactccaatacagccatacatatcccaataagg
ccgacatgtcttaattcaaagaattccacatcctatgagcctagaaggac
tgcatttattctaaccaccactgtgaccatcatgttctgctaaattttgg
aaaaactatgctatttgacccataaagtttcatcatatcattgaagtgtt
attatctggggcaagggtgaagtcagggaattatcttagagtagtttcca
gacctatgaacgttaacgttgattaggagtagcccttttcagatggtgat
tcagggattatatgtgtatattatatgtgtatattatatgtgtatattat
atgtgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93999263_94000373
seq2: B6Ng01-083K06.b_46_1143

seq1  GAATTCTCCTATGTGTGCATGCTAATACACTGAGTGAGAAATGGCATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTATGTGTGCATGCTAATACACTGAGTGAGAAATGGCATTTC  50

seq1  CAGACAAGTTGTTCTCCCGGTGACAGCTGAATTGCACTCTTCCAAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGTTGTTCTCCCGGTGACAGCTGAATTGCACTCTTCCAAATATG  100

seq1  CCAAAACAACAGATTTTCATTTTGTTCAAGGACTTACATCATCGTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAACAGATTTTCATTTTGTTCAAGGACTTACATCATCGTTAAAA  150

seq1  AGCATTTGAGAATTTGTTCCAGTCATCAGAAACACAGAGCTGGGAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGAGAATTTGTTCCAGTCATCAGAAACACAGAGCTGGGAGAGAA  200

seq1  AATAAACACTGAGGTACCAATGTCACACAGGATTTAAACCTTTGAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACTGAGGTACCAATGTCACACAGGATTTAAACCTTTGAAAAAG  250

seq1  CATGTGCAATTACAGAGAACCTTCTCACGGTAAACAGCAGAGGCAAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAATTACAGAGAACCTTCTCACGGTAAACAGCAGAGGCAAGGTC  300

seq1  TTACAAATAAATGGAGTAGGCAGCTTATGGGATGTGATTACAGGGGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATAAATGGAGTAGGCAGCTTATGGGATGTGATTACAGGGGCAAG  350

seq1  CCAGATGCTCCCATCTAAAAATATCTCTCCCTCCTGTTACCTTTAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCTCCCATCTAAAAATATCTCTCCCTCCTGTTACCTTTAGAATT  400

seq1  CATTCCTTTGCATCTTCTAGGGTTTTTTGATCAGCAAGAAACCCCCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTGCATCTTCTAGGGTTTTTTGATCAGCAAGAAACCCCCATTA  450

seq1  AAACGTAAATACTCCTGGGATATGAGGAGCCTCAATCTTTCACGAGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTAAATACTCCTGGGATATGAGGAGCCTCAATCTTTCACGAGCTCT  500

seq1  CTCTTAGCAGACTAGTTGGAATGAAACAAGAAATAGAACAGAGATTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGCAGACTAGTTGGAATGAAACAAGAAATAGAACAGAGATTTGGA  550

seq1  AAAATTAATAGAGAAATACGATAAAGGGATCACAGCAGTAGAGAGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATAGAGAAATACGATAAAGGGATCACAGCAGTAGAGAGGAGAC  600

seq1  CCTAAACTTGGAATTTCTATATTGGAACAAATTTACCCTAGATCGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTTGGAATTTCTATATTGGAACAAATTTACCCTAGATCGATTTT  650

seq1  GAGTCCATGGGTGATTTATAAGAAAAAAAAAATGAAATTTTAAAACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCATGGGTGATTTATAAGAAAAAAAAAATGAAATTTTAAAACAGAG  700

seq1  AAAGGGCTTCAGAAACAGAATTAAAACACTGCAGAACTAATTAAAGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTTCAGAAACAGAATTAAAACACTGCAGAACTAATTAAAGAATC  750

seq1  ATTATTTTTCAGAATTATTCTGCATTTGGAAGAATTATCTAGACACT-AA  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTATTTTTCAGAATTATTCTGCATTTGGAAGAATTATCTAGACACTAAA  800

seq1  GGGATAGGACAGTATCCACTCTATTTCCTTTAAGAAGTCCTGAGCAGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGGACAGTATCCACTCTATTTCCTTTAAGAAGTCCTGAGCAGCAT  850

seq1  TTTTTCCTCAAAGAATAAAGTCAAATCATTAATGGAAACAACAGGTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTTCCTCAAAGAATAAAGTCAAATCATTAATGGAAACAACA-GTGTCT  899

seq1  ATTAAAGGATCTGGGGAAATACTAATTCAGATGATGCAAATATTAACGTA  949
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  ATTAAAGGATCTGGGGAAATACTAATTCAGATGATGCAAATAT--ACGTA  947

seq1  TTAATTATATTAAAACAGAACCATGTAATAGCTGATATAGTTGTGTGTTC  999
      || ||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TT-ATTATATTAAAACAGAATCATGT-ATAGCTGATATAGTTGTGTGTTC  995

seq1  TCCAGAGTCACCAAAACTATGCCCTCTGAGGCTGACGGTTCTGTCTTCTG  1049
      | ||||||||||||||||||||||||||| |||||| ||| |||||||||
seq2  T-CAGAGTCACCAAAACTATGCCCTCTGA-GCTGAC-GTTTTGTCTTCTG  1042

seq1  CTGTGATTTTCTAAGTTCTAGTTTATAGTAAAGGAG-ATGATCTGAACCT  1098
      |||||| ||||||   |||||||   ||| |||||| ||||| || ||||
seq2  CTGTGA-TTTCTA--GTCTAGTT--AAGT-AAGGAGAATGAT-TG-ACCT  1084

seq1  AGACTGTC-ATGTA  1111
      |||||||| |||||
seq2  AGACTGTCTATGTA  1098

seq1: chr14_94144641_94145160
seq2: B6Ng01-083K06.g_65_584 (reverse)

seq1  TCACCCTTGCCCCAGATAATAACACTTCAATGATATGATGAAACTTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTGCCCCAGATAATAACACTTCAATGATATGATGAAACTTTATG  50

seq1  GGTCAAATAGCATAGTTTTTCCAAAATTTAGCAGAACATGATGGTCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAATAGCATAGTTTTTCCAAAATTTAGCAGAACATGATGGTCACAG  100

seq1  TGGTGGTTAGAATAAATGCAGTCCTTCTAGGCTCATAGGATGTGGAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTAGAATAAATGCAGTCCTTCTAGGCTCATAGGATGTGGAATTC  150

seq1  TTTGAATTAAGACATGTCGGCCTTATTGGGATATGTATGGCTGTATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTAAGACATGTCGGCCTTATTGGGATATGTATGGCTGTATTGGA  200

seq1  GTAACCCTATCACGGAGAGTAGGTTTTGAGGTTTCAGGGGCTCAAACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCTATCACGGAGAGTAGGTTTTGAGGTTTCAGGGGCTCAAACCAG  250

seq1  ACTCAATGGCTCTTTTTCTTCCTACTGCCTGCTGTTCTGATGAAGAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGGCTCTTTTTCTTCCTACTGCCTGCTGTTCTGATGAAGAACTC  300

seq1  TGAGGTACTTCTTCAGATGTAGATCTCTCAACTCCTTTCCAGAAACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACTTCTTCAGATGTAGATCTCTCAACTCCTTTCCAGAAACACAT  350

seq1  TTCTCTGCATTCTGTCAAACTTCCTGATATGACAATCATGGACTAAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCATTCTGTCAAACTTCCTGATATGACAATCATGGACTAAACCT  400

seq1  CTGAATCTATAAGCCAGCTCCCATAAATATTTTCTTTTATCAGAATTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTATAAGCCAGCTCCCATAAATATTTTCTTTTATCAGAATTGAT  450

seq1  ATGATTATGGAGACTCTTTGCATCAATAAAGTCCATAACTAAGACAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATGGAGACTCTTTGCATCAATAAAGTCCATAACTAAGACAGCCC  500

seq1  TGGAAACATATCTGGAATTC  520
      ||||||||||||||||||||
seq2  TGGAAACATATCTGGAATTC  520