BAC Information

Click to search

BAC

Clone NameB6Ng01-083K20
Chromosome14 (Build37)
Map Location 94,814,058 - 94,920,736
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083K20.bB6Ng01-083K20.g
ACCDH897871DH897872
length1,208662
definitionDH897871|Mus musculus domesticus DNA, BAC clone: B6Ng01-083K20, 5' end.DH897872|Mus musculus domesticus DNA, BAC clone: B6Ng01-083K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,814,058 - 94,815,299)(94,920,083 - 94,920,736)
sequence
gaattcctaaagagaaattataccaactgtgggtctcatatacaaagaat
gtaattaaaatcatgaaattagctgaggtcaaatcagtgaacaaatataa
aaggactaaggcctgaggaaaaatttcttcaggataaaattcaaagacat
taaaaagaagtggaaatgttaatagtcaatataatggtggaaatgtcaga
agtatatgtagtagaggaatatttaaaaatataatactggggaaaacata
aaaagtagcaataactaatacaatgccaaattaattaaaatttaaatttt
atttgccaaggtttgcaatgtagagaggtaatgtaggagtggattataat
agcaatagccataatttagcaccagcaataatcagaatttaccacctcct
tagaataacctttgcacattcgaaaatagtgagaaaactcagggattctg
gttgcaaaacaaattcatagatttgaagcaagattatagtaattaaatag
cacaaagttaggcatatgttaagaaataaatttgtttagagaatgaattt
ctgttgcttccaggcttcaaaatttgcatgaaaaaatatgttttcatgga
tactgtaggatgtatttaaaatatcagttggggatttttgaataatgatg
cgattttctggagtgaattcgtaagtgtggcagtatagaagtaataacat
gcaaagggtaaagttttggagttctgtgcctctgagttatataaagtatt
aacaagatttcttttgcagacttcctgtatcagccttccaaataacacta
cctcatacctggtcctttgccacagacttcatatactatgataaatctga
taatttctataaccaaacaaagtttttattctatgtatatcaagcagaaa
attattttatacatggaggctgtttaaattccattctaatttaaagggat
aattatttttaaaggatgtttaaccaaagtggaaataacccagatgtctc
acacgtaggatggatataggaaatgtgattcattcacacatggaatatta
ctcaatattaagacagggaaatcatgagtctacagcagtgatgactagaa
aatttcatcctgatgagaactcagacctagtgatattgcatgcatgtact
tccctatagtgatagccaaaaagttcagatcaggatatgatctataaagt
tcagaagg
gaattcttatcatggctttgctgatttctcagggacctattagatcttgc
ttttgctgtgcaaatggctatggaaattaagcttgctgaagcactttccc
tgggcaaacagtctttgttttccatcagttcacgtgtcaagtggtttgaa
tgcagaatcgggtacctctggaagcagctgggcgccatcaatcttcatga
ctttgctggattcactgtttcacctctacctggttcagtgggtgattgta
aaggatggcggagcaatcaagctattccctgtgactgacatcaggcaatt
ctatctaacacctccgtgctgccaggtcattgctgggcactaagaaaatt
ggacactaggtgatgtagcaaaatgcccttcacattttaacatatctgcc
atctatttttggtttcggacttgaatttttgaacctgatccaccaaccca
aaaagcttagcttgttggttgttttatgtttgtttgtttgtttgtttgtc
tgtttgggaggtttggggtgttctttgtttttgtttgtatgaacttttac
acttgttatctcattgaacgcatctatataggttactataatacctttta
tttttctgaaaagacattatttgccataaaatcaacgagagtgatttttg
aaaaagacatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94814058_94815299
seq2: B6Ng01-083K20.b_45_1252

seq1  GAATTCCTAAAGAGAAATTATACCAACTGTGGGTCTCATATACAAAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAGAGAAATTATACCAACTGTGGGTCTCATATACAAAGAAT  50

seq1  GTAATTAAAATCATGAAATTAGCTGAGGTCAAATCAGTGAACAAATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAAATCATGAAATTAGCTGAGGTCAAATCAGTGAACAAATATAA  100

seq1  AAGGACTAAGGCCTGAGGAAAAATTTCTTCAGGATAAAATTCAAAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTAAGGCCTGAGGAAAAATTTCTTCAGGATAAAATTCAAAGACAT  150

seq1  TAAAAAGAAGTGGAAATGTTAATAGTCAATATAATGGTGGAAATGTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAGTGGAAATGTTAATAGTCAATATAATGGTGGAAATGTCAGA  200

seq1  AGTATATGTAGTAGAGGAATATTTAAAAATATAATACTGGGGAAAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGTAGTAGAGGAATATTTAAAAATATAATACTGGGGAAAACATA  250

seq1  AAAAGTAGCAATAACTAATACAATGCCAAATTAATTAAAATTTAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGCAATAACTAATACAATGCCAAATTAATTAAAATTTAAATTTT  300

seq1  ATTTGCCAAGGTTTGCAATGTAGAGAGGTAATGTAGGAGTGGATTATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCAAGGTTTGCAATGTAGAGAGGTAATGTAGGAGTGGATTATAAT  350

seq1  AGCAATAGCCATAATTTAGCACCAGCAATAATCAGAATTTACCACCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGCCATAATTTAGCACCAGCAATAATCAGAATTTACCACCTCCT  400

seq1  TAGAATAACCTTTGCACATTCGAAAATAGTGAGAAAACTCAGGGATTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAACCTTTGCACATTCGAAAATAGTGAGAAAACTCAGGGATTCTG  450

seq1  GTTGCAAAACAAATTCATAGATTTGAAGCAAGATTATAGTAATTAAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAAACAAATTCATAGATTTGAAGCAAGATTATAGTAATTAAATAG  500

seq1  CACAAAGTTAGGCATATGTTAAGAAATAAATTTGTTTAGAGAATGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTTAGGCATATGTTAAGAAATAAATTTGTTTAGAGAATGAATTT  550

seq1  CTGTTGCTTCCAGGCTTCAAAATTTGCATGAAAAAATATGTTTTCATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTTCCAGGCTTCAAAATTTGCATGAAAAAATATGTTTTCATGGA  600

seq1  TACTGTAGGATGTATTTAAAATATCAGTTGGGGATTTTTGAATAATGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGGATGTATTTAAAATATCAGTTGGGGATTTTTGAATAATGATG  650

seq1  CGATTTTCTGGAGTGAATTCGTAAGTGTGGCAGTATAGAAGTAATAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTCTGGAGTGAATTCGTAAGTGTGGCAGTATAGAAGTAATAACAT  700

seq1  GCAAAGGGTAAAGTTTTGGAGTTCTGTGCCTCTGAGTTATATAAAGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGTAAAGTTTTGGAGTTCTGTGCCTCTGAGTTATATAAAGTATT  750

seq1  AACAAGATTTCTTTTGCAGACTTCCTGTATCAGCCTTCCAAATAACACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATTTCTTTTGCAGACTTCCTGTATCAGCCTTCCAAATAACACTA  800

seq1  CCTCATACCTGGTCCTTTGCCACAGACTTCATATACTATGATAAATCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATACCTGGTCCTTTGCCACAGACTTCATATACTATGATAAATCTGA  850

seq1  TAATTTCTATAACCAAACAAAAGTTTTTATTCTATGTATATCAAGCAGAA  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAATTTCTATAACCAAAC-AAAGTTTTTATTCTATGTATATCAAGCAGAA  899

seq1  AATTATTTTATACATGGAGGCTGTTTAAATTCCATTCTAATTTAAAGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTATACATGGAGGCTGTTTAAATTCCATTCTAATTTAAAGGGA  949

seq1  TAAATTATTTTTAAAAGGAAGGTTTAACCAAAAGGTGGAAATAACCCAGA  1000
      | |||||||||||||  | | |||||||||||  ||||||||||||||||
seq2  T-AATTATTTTTAAA--GGATGTTTAACCAAA--GTGGAAATAACCCAGA  994

seq1  TGTCCCACAACGTAAGGATGGATATAGGAAATGTGATTCATTCACACAAT  1050
      |||| ||| |||| ||||||||||||||||||||||||||||||||| ||
seq2  TGTCTCAC-ACGT-AGGATGGATATAGGAAATGTGATTCATTCACAC-AT  1041

seq1  GGAATATTACTCAATTATTAAGAACAGGGAAATCATGAGTTCTACAGGCA  1100
      |||||||||||||| ||||||| |||||||||||||||| |||||| |||
seq2  GGAATATTACTCAA-TATTAAG-ACAGGGAAATCATGAG-TCTACA-GCA  1087

seq1  AGTTGATGGAACTAGAAAATATCATCCTGAATGAAGAAACTCAGACTTAA  1150
         |||||  |||||||||| |||||||| ||||   ||||||||| |  
seq2  --GTGATG--ACTAGAAAATTTCATCCTG-ATGA--GAACTCAGACCT--  1128

seq1  AGTGATA-TGCATGGTATGTAC-TCACTAATAAGTAGATATTAGCAAAAA  1198
      ||||||| ||||| | |||||| || |||     ||| |  ||||   ||
seq2  AGTGATATTGCAT-GCATGTACTTCCCTA-----TAG-TGATAGC--CAA  1169

seq1  AAAGTACAGAAATCCCAGGATATGATCTATAGAGTTCAAGAAGG  1242
      ||||| ||||     |||||||||||||||| ||||| ||||||
seq2  AAAGTTCAGA----TCAGGATATGATCTATAAAGTTC-AGAAGG  1208

seq1: chr14_94920083_94920736
seq2: B6Ng01-083K20.g_68_729 (reverse)

seq1  GCATGTCTTTT--CAAAATCACTCTCGTTGATTTTATGGCAAATAATGTC  48
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTTTTTCAAAAATCACTCTCGTTGATTTTATGGCAAATAATGTC  50

seq1  -TTTCAGAAAA--TAAAGGTATTATAGTAACCT-TATAGATGCGTTCAAT  94
       ||||||||||   ||||||||||||||||||| ||||||||||||||||
seq2  TTTTCAGAAAAATAAAAGGTATTATAGTAACCTATATAGATGCGTTCAAT  100

seq1  GA-ATAACATGTGTAAAAGTTCATAC-AACAAAAACAAAGAACACCCCAA  142
      || |||||| |||||||||||||||| |||||||||||||||||||||||
seq2  GAGATAACAAGTGTAAAAGTTCATACAAACAAAAACAAAGAACACCCCAA  150

seq1  ACCTCCCAAACAGACAAACAAACAAACAAACAAACATAAAACAACCAACA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCAAACAGACAAACAAACAAACAAACAAACATAAAACAACCAACA  200

seq1  AGCTAAGCTTTTTGGGTTGGTGGATCAGGTTCAAAAATTCAAGTCCGAAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGCTTTTTGGGTTGGTGGATCAGGTTCAAAAATTCAAGTCCGAAA  250

seq1  CCAAAAATAGATGGCAGATATGTTAAAATGTGAAGGGCATTTTGCTACAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATAGATGGCAGATATGTTAAAATGTGAAGGGCATTTTGCTACAT  300

seq1  CACCTAGTGTCCAATTTTCTTAGTGCCCAGCAATGACCTGGCAGCACGGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGTGTCCAATTTTCTTAGTGCCCAGCAATGACCTGGCAGCACGGA  350

seq1  GGTGTTAGATAGAATTGCCTGATGTCAGTCACAGGGAATAGCTTGATTGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAGATAGAATTGCCTGATGTCAGTCACAGGGAATAGCTTGATTGC  400

seq1  TCCGCCATCCTTTACAATCACCCACTGAACCAGGTAGAGGTGAAACAGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCATCCTTTACAATCACCCACTGAACCAGGTAGAGGTGAAACAGTG  450

seq1  AATCCAGCAAAGTCATGAAGATTGATGGCGCCCAGCTGCTTCCAGAGGTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCAAAGTCATGAAGATTGATGGCGCCCAGCTGCTTCCAGAGGTA  500

seq1  CCCGATTCTGCATTCAAACCACTTGACACGTGAACTGATGGAAAACAAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATTCTGCATTCAAACCACTTGACACGTGAACTGATGGAAAACAAAG  550

seq1  ACTGTTTGCCCAGGGAAAGTGCTTCAGCAAGCTTAATTTCCATAGCCATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGCCCAGGGAAAGTGCTTCAGCAAGCTTAATTTCCATAGCCATT  600

seq1  TGCACAGCAAAAGCAAGATCTAATAGGTCCCTGAGAAATCAGCAAAGCCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGCAAAAGCAAGATCTAATAGGTCCCTGAGAAATCAGCAAAGCCA  650

seq1  TGATAAGAATTC  654
      ||||||||||||
seq2  TGATAAGAATTC  662