BAC Information

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BAC

Clone NameB6Ng01-083L16
Chromosome14 (Build37)
Map Location 48,826,168 - 48,966,724
singlet/doubletdoublet
Overlap genePeli2, EG624367
Upstream geneWdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2
Downstream geneLOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083L16.bB6Ng01-083L16.g
ACCDH897907DH897908
length1,172660
definitionDH897907|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L16, 5' end.DH897908|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,826,168 - 48,827,350)(48,966,067 - 48,966,724)
sequence
gaattctgagaagtggaatcgtccataaagaagcattcttaggtaccctg
tctcttcgagtctccgttctttgtagttctttacaattcacatccccgtg
gtgaaagtcacacattgttttccaatcccaatggctgcagttgtccttca
gttgtccttccttgtgtggatcctgcccttccccgcttgtgataagacaa
gacgatatcttatactctgagcactcttctatcccaaacctgtctcagct
cccagagcagtaatctccctcagtcagcacccgaggaagtgagcctcagg
ctcagacagtcagactgtcactcccacaggcttctgcgggcctcccagga
cattggtttgtgtttatggatgacccttaattgttgattgttcccccatt
tctgctgtcagtttagaagcagaaaattaggtgggggaaattctgtgtag
gttggtaaattagaaggtagcctgctgcacattggattcttcccgttgaa
gtctcttactttcgtgtgtttataactcgccaccttctacaaaggactgg
aggcagctgacatccttacagagagttgcctgttgtttctttaatagata
caggctccttaaagactctcaggactgaaaatgtcatgcagctgaacaga
taatttgagtgtcgtgctaacactttttattgctttattaatgcttgtca
tgggaaccatatcccagacagcacaggtaaacaatacgttaacagcagac
acgggatttttcctgtctgaccgacgtgtgccttatctgtgggctgcaga
ctttcagcttgctccttacgtctgctctcttcataaggcttggaacaaga
gacacacagcagacgtgtcccagctgctgatggctgtggcagcgccagcg
ccagcgtgactgcagtgggctgcgccgtgggaagaagatgctttaactct
ttgcagtctaacagcagattaatttcatttgtgcggcggcacatctgcgg
ggtgtgctttgctctctgaaaaaaagatgacaatctgctagaagctagtg
ttttgtggggaaaaatagctgaaaaagaaaatgaatgttgaagtaaccat
agtaataagcgccagcatgatttgtatttttcttctctgggaaaaaaaag
tcaacttaacctgaaagacaac
gaattcctaaattccctcctctcccctatttcaggaatttaaaattaagt
agaacaaaacaaaaacccagcgcacctattacagctgtcgttctgtcgtc
atgggaatcagttttcattaaacttgaagcagttgtgacttcggcagtgt
tttggttcagacacctattcacagaaaagcatgatgggaaaatatttcct
gactggagtgttcctttttaaatgtgaatttttatttcattttaattatt
taaaaatatttaagccttcttctggatcttaaagattgtgtagcttgggg
gttagggagggataaagggtgagtgagtctaaggataatgaaataatcag
tgactgaaaccattttcccatcatgctttgtgctgaccattctttgtacc
cttaagagatccatctttttctttggaaaccctagtctttcacttgaaag
attttattgtacaaaaacttccacaggtcaataactttagagaaaaatga
gcatttggtccaagaaaaacaaaaacaaaaaaacaaaacaaaaaggaaaa
ataatcaagattttagggtttttatttttttcttttgtaattgtataaaa
tatggaaaaaaacataaaagaggaaaattttaatgtgaagactttttttt
tgctataatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48826168_48827350
seq2: B6Ng01-083L16.b_49_1220

seq1  GAATTCTGAGAAGTGGAATCGTCCATAAAGAAGCATTCTTAGGTACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAAGTGGAATCGTCCATAAAGAAGCATTCTTAGGTACCCTG  50

seq1  TCTCTTCGAGTCTCCGTTCTTTGTAGTTCTTTACAATTCACATCCCCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCGAGTCTCCGTTCTTTGTAGTTCTTTACAATTCACATCCCCGTG  100

seq1  GTGAAAGTCACACATTGTTTTCCAATCCCAATGGCTGCAGTTGTCCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTCACACATTGTTTTCCAATCCCAATGGCTGCAGTTGTCCTTCA  150

seq1  GTTGTCCTTCCTTGTGTGGATCCTGCCCTTCCCCGCTTGTGATAAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCTTCCTTGTGTGGATCCTGCCCTTCCCCGCTTGTGATAAGACAA  200

seq1  GACGATATCTTATACTCTGAGCACTCTTCTATCCCAAACCTGTCTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATATCTTATACTCTGAGCACTCTTCTATCCCAAACCTGTCTCAGCT  250

seq1  CCCAGAGCAGTAATCTCCCTCAGTCAGCACCCGAGGAAGTGAGCCTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCAGTAATCTCCCTCAGTCAGCACCCGAGGAAGTGAGCCTCAGG  300

seq1  CTCAGACAGTCAGACTGTCACTCCCACAGGCTTCTGCGGGCCTCCCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAGTCAGACTGTCACTCCCACAGGCTTCTGCGGGCCTCCCAGGA  350

seq1  CATTGGTTTGTGTTTATGGATGACCCTTAATTGTTGATTGTTCCCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTTGTGTTTATGGATGACCCTTAATTGTTGATTGTTCCCCCATT  400

seq1  TCTGCTGTCAGTTTAGAAGCAGAAAATTAGGTGGGGGAAATTCTGTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTCAGTTTAGAAGCAGAAAATTAGGTGGGGGAAATTCTGTGTAG  450

seq1  GTTGGTAAATTAGAAGGTAGCCTGCTGCACATTGGATTCTTCCCGTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAAATTAGAAGGTAGCCTGCTGCACATTGGATTCTTCCCGTTGAA  500

seq1  GTCTCTTACTTTCGTGTGTTTATAACTCGCCACCTTCTACAAAGGACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTACTTTCGTGTGTTTATAACTCGCCACCTTCTACAAAGGACTGG  550

seq1  AGGCAGCTGACATCCTTACAGAGAGTTGCCTGTTGTTTCTTTAATAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTGACATCCTTACAGAGAGTTGCCTGTTGTTTCTTTAATAGATA  600

seq1  CAGGCTCCTTAAAGACTCTCAGGACTGAAAATGTCATGCAGCTGAACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCTTAAAGACTCTCAGGACTGAAAATGTCATGCAGCTGAACAGA  650

seq1  TAATTTGAGTGTCGTGCTAACACTTTTTATTGCTTTATTAATGCTTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGAGTGTCGTGCTAACACTTTTTATTGCTTTATTAATGCTTGTCA  700

seq1  TGGGAACCATATCCCAGACAGCACAGGTAAACAATACGTTAACAGCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCATATCCCAGACAGCACAGGTAAACAATACGTTAACAGCAGAC  750

seq1  ACGGGATTTTTCCTGTCTGACCGACGTGTGCCTTATCTGTGGGCTGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGATTTTTCCTGTCTGACCGACGTGTGCCTTATCTGTGGGCTGCAGA  800

seq1  CTTTCAGCTTGCTCCTTACGTCTGCTCTCTTCATAAGGCTTGGAACAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCTTGCTCCTTACGTCTGCTCTCTTCATAAGGCTTGGAACAAGA  850

seq1  GACACACAGCAGACGTGTCCCAGCTGCTGATGGCTGTGGCAGCGCCAGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAGCAGACGTGTCCCAGCTGCTGATGGCTGTGGCAGCGCCAGCG  900

seq1  CCAGCGTGACTGCAGTGGGCTGCGCCGTGGGAAGAAGGATGCTTTAACTC  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGCGTGACTGCAGTGGGCTGCGCCGTGGGAAGAA-GATGCTTTAACTC  949

seq1  TTTGCAGTTCTAACAGCAGATTAATTTCATTTGTGCGGCGGCACATCTGC  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAG-TCTAACAGCAGATTAATTTCATTTGTGCGGCGGCACATCTGC  998

seq1  GGGGTGTGCTTTGCTCTCTGACACACAGATGACAATCTGGCTAGAAGCTA  1050
      ||||||||||||||||||||| | | |||||||||||| |||||||||||
seq2  GGGGTGTGCTTTGCTCTCTGAAAAAAAGATGACAATCT-GCTAGAAGCTA  1047

seq1  GTG-TTTGTGGGG-AAAATAGCTG-AAGAGAAAATGATGGTTTTGAAGTA  1097
      ||| ||||||||| |||||||||| || |||||||||   | ||||||||
seq2  GTGTTTTGTGGGGAAAAATAGCTGAAAAAGAAAATGA--ATGTTGAAGTA  1095

seq1  A-CATAGTTATAAAGCG-CAGCATGGATCTGTATTTTTCTTCTCTGGGGG  1145
      | |||||| || ||||| |||||| ||| |||||||||||||||||||  
seq2  ACCATAGTAAT-AAGCGCCAGCAT-GATTTGTATTTTTCTTCTCTGGG--  1141

seq1  AAAAAAAAAAGTCAACATTTTCACCCTGGAAAGACAAC  1183
        ||||||||||||||   || |||   ||||||||||
seq2  --AAAAAAAAGTCAAC---TTAACC--TGAAAGACAAC  1172

seq1: chr14_48966067_48966724
seq2: B6Ng01-083L16.g_69_728 (reverse)

seq1  GATTATAGC-AAAAAAAAGTCTTCACATTAAAATTTTCCTC-TTTATGTT  48
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  GATTATAGCAAAAAAAAAGTCTTCACATTAAAATTTTCCTCTTTTATGTT  50

seq1  TTTTTCCATTTTTTATACAATTACAAAAGAAAAAAATAAAAACCCTAAAA  98
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATATTTTATACAATTACAAAAGAAAAAAATAAAAACCCTAAAA  100

seq1  TCTTGATTATTTTTCCTTTTTGTTTTGTTTTTTTGTTTTTGTTTTTCTTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTATTTTTCCTTTTTGTTTTGTTTTTTTGTTTTTGTTTTTCTTG  150

seq1  GACCAAATGCTCATTTTTCTCTAAAGTTATTGACCTGTGGAAGTTTTTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAATGCTCATTTTTCTCTAAAGTTATTGACCTGTGGAAGTTTTTGT  200

seq1  ACAATAAAATCTTTCAAGTGAAAGACTAGGGTTTCCAAAGAAAAAGATGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAATCTTTCAAGTGAAAGACTAGGGTTTCCAAAGAAAAAGATGG  250

seq1  ATCTCTTAAGGGTACAAAGAATGGTCAGCACAAAGCATGATGGGAAAATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAAGGGTACAAAGAATGGTCAGCACAAAGCATGATGGGAAAATG  300

seq1  GTTTCAGTCACTGATTATTTCATTATCCTTAGACTCACTCACCCTTTATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTCACTGATTATTTCATTATCCTTAGACTCACTCACCCTTTATC  350

seq1  CCTCCCTAACCCCCAAGCTACACAATCTTTAAGATCCAGAAGAAGGCTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTAACCCCCAAGCTACACAATCTTTAAGATCCAGAAGAAGGCTTA  400

seq1  AATATTTTTAAATAATTAAAATGAAATAAAAATTCACATTTAAAAAGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTAAATAATTAAAATGAAATAAAAATTCACATTTAAAAAGGAA  450

seq1  CACTCCAGTCAGGAAATATTTTCCCATCATGCTTTTCTGTGAATAGGTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGTCAGGAAATATTTTCCCATCATGCTTTTCTGTGAATAGGTGT  500

seq1  CTGAACCAAAACACTGCCGAAGTCACAACTGCTTCAAGTTTAATGAAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCAAAACACTGCCGAAGTCACAACTGCTTCAAGTTTAATGAAAAC  550

seq1  TGATTCCCATGACGACAGAACGACAGCTGTAATAGGTGCGCTGGGTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCATGACGACAGAACGACAGCTGTAATAGGTGCGCTGGGTTTTT  600

seq1  GTTTTGTTCTACTTAATTTTAAATTCCTGAAATAGGGGAGAGGAGGGAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCTACTTAATTTTAAATTCCTGAAATAGGGGAGAGGAGGGAAT  650

seq1  TTAGGAATTC  658
      ||||||||||
seq2  TTAGGAATTC  660