BAC Information

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BAC

Clone NameB6Ng01-083O20
Chromosome14 (Build37)
Map Location 118,312,998 - 118,471,863
singlet/doubletdoublet
Overlap geneGpc6, LOC100043822, Dct
Upstream gene5730405N03Rik
Downstream geneTgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083O20.bB6Ng01-083O20.g
ACCDH898045DH898046
length9471,103
definitionDH898045|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O20, 5' end.DH898046|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,470,921 - 118,471,863)(118,312,998 - 118,314,091)
sequence
gaattcactttataggccaggctgaccttgaattcatagatgtcaaacta
cctttgaaacagcacacatacacacacaggaacatggcgagggagacggt
aaagagccctggagccgtcccggtgactgctctcatcatattgagacctg
aactgaaagcacagtgagtcacagggacagcaaagaggtggggcccgtgg
cctcacagttgctgcccactctggagaagggtaaatgaacgtggttctag
agctaggaggcaggctggcttttccaatattaccctatggcttctgggca
catcaaggaaactaccatataagtcttgggtagtggtgtgtaacaaggga
gttgaggaggaaaagaaaaacaaacaaacaaaaacaagccatcatttctc
aatacactcaaggaagaaaaacatgggagaatgcttgaaagccttaccaa
aggccaatcttagaagtgtagggcgttaaatctatgctctggctggggga
aggacaggaggatattgggacaaatgatggtgtggggaggggcatcattt
aagactaaagaaagaaaccagagatgcgggcaatcagtcctgtgtatatc
aacagtgcctaggctgagtccttctacctactctaaggagccactcaagc
tggaggagtatagcggggggagcgaggcaggagggatggggagaagggca
gattgatggtctgtgatcagcagctaaggtgagggaggggcatgtcttgg
tctgtttacagtctcgtctgatatgccttaccacttctgatagtagcctc
acttaaatacagctttcttcggggtaccatttcactaggaaaccattggt
tacaattggcaggatgataaggtgtacaatttatatcatttcagggtcta
agatggatcacctttgtagtgcggccttccctttcatactggggatg
gaattctctccaacattgtagccaaacacaggggtggaactgtgctgtta
gatgactttgcaatacacatgggctagtcttccttcatccctgcagtggc
cctggaatgatgcacgatctgctctatttttctctgcaggaaactcaagt
ccaaagtgcagctcattctgagaggtcacagatagacaccagaagtaaga
ttcaaatcctgactgtctgatcccaaaggctgttcgtgggggtagtcagt
ggtcagccagtgctggaagccatattgctgtggagaaggagaaaaagaag
gtgggagtctggggggaaagaaagggagacagaacagtcattaaaagcaa
aacggtagaaatgaaatcacagcgtttgagtcagagcccttagcagatct
catcttcttttcttcacattccttaccatgccttcatcaacctctgttga
gaggacaatcgggtgtgtctcccatcaccctctctaagtgccttttgata
cttatagcagaatgggacagagaagtagatgggcattgaaggctccgtgt
ctgtcaccgctactgactctgctccctgcagtcataaacagccataaaca
aatgagtgtggccgtgctcttgtaaaaattgtttctaaagtaacagccag
ctagaggccacggttttgctcgcccctgccttaggacagtgacttctacc
ttaggcagcgtattctgtcactttgaggaaagacgatggggctcctgcac
cttcggcttcttaaagtgcagtgcggttaaggattttcaaagcatcctct
agagatagagtctgaaaagggagacagggagcctgttgctccagcaccta
attttcactgaatctggcgtctggaaccatgtcaccctcaactttgacaa
agatcttttgtggatccccactccagacctacctaccatatctgtgtctt
ccaggagagtgacccagaattcggtgacctcaaaaagctaacaagttttg
agaattcttaggtatacttcttcaaatttgtgtttccaggtcaccagcct
ttcagttgaattttcctctatggataaaccaggtatatggttttagctca
caa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118470921_118471863
seq2: B6Ng01-083O20.b_46_992 (reverse)

seq1  CATCCCAAGTACTGAAAGGGAAGCTGCCACT-CCTAGGTGATCCATCTTA  49
      |||||| |||| |||||||||||    |||| |  |||||||||||||| 
seq2  CATCCCCAGTA-TGAAAGGGAAGGCCGCACTACAAAGGTGATCCATCTT-  48

seq1  AGACACTGGAAATGATCTAACTTGTACACC-TATCATCCTGCCACTTGTA  98
      |||| || |||||||| ||| ||||||||| ||||||||||||| |||||
seq2  AGACCCT-GAAATGATATAAATTGTACACCTTATCATCCTGCCAATTGTA  97

seq1  ACC-ATGGCTTCCATAGCTGAAATGCTGACCCGAAG-AAGCTGTATTTAA  146
      ||| |||| |||| ||| ||||||| |  ||||||| |||||||||||||
seq2  ACCAATGGTTTCC-TAG-TGAAATGGTACCCCGAAGAAAGCTGTATTTAA  145

seq1  GTGA-GCTTCTGTCAGGGGTGGTAAGGCATATCTGACGAGACTGTAAACA  195
      |||| ||| || ||||  ||||||||||||||| ||||||||||||||||
seq2  GTGAGGCTACTATCAGAAGTGGTAAGGCATATCAGACGAGACTGTAAACA  195

seq1  GACC-AGACATGCCCCTCCCTCACCTT-GCTGCTGATCACAGGCC-TCAA  242
      |||| |||||||||||||||||||||| |||||||||||||| || ||||
seq2  GACCAAGACATGCCCCTCCCTCACCTTAGCTGCTGATCACAGACCATCAA  245

seq1  TCTGCCCTTCTCCCCATCCCTCCTGCCTCGCT-CCCCCGCTATACTCCTC  291
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTGCCCTTCTCCCCATCCCTCCTGCCTCGCTCCCCCCGCTATACTCCTC  295

seq1  CAGCTTGAGTGGCTCCTTAGAGTAGGTAGAAGGACTCAGCCTAGGCACTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGAGTGGCTCCTTAGAGTAGGTAGAAGGACTCAGCCTAGGCACTG  345

seq1  TTGATATACACAGGACTGATTGCCCGCATCTCTGGTTTCTTTCTTTAGTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATACACAGGACTGATTGCCCGCATCTCTGGTTTCTTTCTTTAGTC  395

seq1  TTAAATGATGCCCCTCCCCACACCATCATTTGTCCCAATATCCTCCTGTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGATGCCCCTCCCCACACCATCATTTGTCCCAATATCCTCCTGTC  445

seq1  CTTCCCCCAGCCAGAGCATAGATTTAACGCCCTACACTTCTAAGATTGGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCAGCCAGAGCATAGATTTAACGCCCTACACTTCTAAGATTGGC  495

seq1  CTTTGGTAAGGCTTTCAAGCATTCTCCCATGTTTTTCTTCCTTGAGTGTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTAAGGCTTTCAAGCATTCTCCCATGTTTTTCTTCCTTGAGTGTA  545

seq1  TTGAGAAATGATGGCTTGTTTTTGTTTGTTTGTTTTTCTTTTCCTCCTCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATGATGGCTTGTTTTTGTTTGTTTGTTTTTCTTTTCCTCCTCA  595

seq1  ACTCCCTTGTTACACACCACTACCCAAGACTTATATGGTAGTTTCCTTGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTTGTTACACACCACTACCCAAGACTTATATGGTAGTTTCCTTGA  645

seq1  TGTGCCCAGAAGCCATAGGGTAATATTGGAAAAGCCAGCCTGCCTCCTAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAGAAGCCATAGGGTAATATTGGAAAAGCCAGCCTGCCTCCTAG  695

seq1  CTCTAGAACCACGTTCATTTACCCTTCTCCAGAGTGGGCAGCAACTGTGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAACCACGTTCATTTACCCTTCTCCAGAGTGGGCAGCAACTGTGA  745

seq1  GGCCACGGGCCCCACCTCTTTGCTGTCCCTGTGACTCACTGTGCTTTCAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACGGGCCCCACCTCTTTGCTGTCCCTGTGACTCACTGTGCTTTCAG  795

seq1  TTCAGGTCTCAATATGATGAGAGCAGTCACCGGGACGGCTCCAGGGCTCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCTCAATATGATGAGAGCAGTCACCGGGACGGCTCCAGGGCTCT  845

seq1  TTACCGTCTCCCTCGCCATGTTCCTGTGTGTGTATGTGTGCTGTTTCAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGTCTCCCTCGCCATGTTCCTGTGTGTGTATGTGTGCTGTTTCAAA  895

seq1  GGTAGTTTGACATCTATGAATTCAAGGTCAGCCTGGCCTATAAAGTGAAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTGACATCTATGAATTCAAGGTCAGCCTGGCCTATAAAGTGAAT  945

seq1  TC  943
      ||
seq2  TC  947

seq1: chr14_118312998_118314091
seq2: B6Ng01-083O20.g_68_1170

seq1  GAATTCTCTCCAACATTGTAGCCAAACACAGGGGTGGAACTGTGCTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCAACATTGTAGCCAAACACAGGGGTGGAACTGTGCTGTTA  50

seq1  GATGACTTTGCAATACACATGGGCTAGTCTTCCTTCATCCCTGCAGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTTTGCAATACACATGGGCTAGTCTTCCTTCATCCCTGCAGTGGC  100

seq1  CCTGGAATGATGCACGATCTGCTCTATTTTTCTCTGCAGGAAACTCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATGATGCACGATCTGCTCTATTTTTCTCTGCAGGAAACTCAAGT  150

seq1  CCAAAGTGCAGCTCATTCTGAGAGGTCACAGATAGACACCAGAAGTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGCAGCTCATTCTGAGAGGTCACAGATAGACACCAGAAGTAAGA  200

seq1  TTCAAATCCTGACTGTCTGATCCCAAAGGCTGTTCGTGGGGGTAGTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCCTGACTGTCTGATCCCAAAGGCTGTTCGTGGGGGTAGTCAGT  250

seq1  GGTCAGCCAGTGCTGGAAGCCATATTGCTGTGGAGAAGGAGAAAAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCCAGTGCTGGAAGCCATATTGCTGTGGAGAAGGAGAAAAAGAAG  300

seq1  GTGGGAGTCTGGGGGGAAAGAAAGGGAGACAGAACAGTCATTAAAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTCTGGGGGGAAAGAAAGGGAGACAGAACAGTCATTAAAAGCAA  350

seq1  AACGGTAGAAATGAAATCACAGCGTTTGAGTCAGAGCCCTTAGCAGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTAGAAATGAAATCACAGCGTTTGAGTCAGAGCCCTTAGCAGATCT  400

seq1  CATCTTCTTTTCTTCACATTCCTTACCATGCCTTCATCAACCTCTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTTTTCTTCACATTCCTTACCATGCCTTCATCAACCTCTGTTGA  450

seq1  GAGGACAATCGGGTGTGTCTCCCATCACCCTCTCTAAGTGCCTTTTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAATCGGGTGTGTCTCCCATCACCCTCTCTAAGTGCCTTTTGATA  500

seq1  CTTATAGCAGAATGGGACAGAGAAGTAGATGGGCATTGAAGGCTCCGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGCAGAATGGGACAGAGAAGTAGATGGGCATTGAAGGCTCCGTGT  550

seq1  CTGTCACCGCTACTGACTCTGCTCCCTGCAGTCATAAACAGCCATAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCGCTACTGACTCTGCTCCCTGCAGTCATAAACAGCCATAAACA  600

seq1  AATGAGTGTGGCCGTGCTCTTGTAAAAATTGTTTCTAAAGTAACAGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGTGGCCGTGCTCTTGTAAAAATTGTTTCTAAAGTAACAGCCAG  650

seq1  CTAGAGGCCACGG-TTTGCTCGCCCCTGCCTTAGGACAGTGACTTCTACC  699
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGCCACGGTTTTGCTCGCCCCTGCCTTAGGACAGTGACTTCTACC  700

seq1  TTAGGCAGCGTATTCTGTCAC-TTGAGGAAAGACGATGGGGCTCCTGCAC  748
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAGGCAGCGTATTCTGTCACTTTGAGGAAAGACGATGGGGCTCCTGCAC  750

seq1  CTTCGGCTTCTTAAAGTGCAGTGCGG-TAAGGATTTTCAAAGCATCCTCT  797
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTCGGCTTCTTAAAGTGCAGTGCGGTTAAGGATTTTCAAAGCATCCTCT  800

seq1  AGAGATAGAGTCTG-AAAGGGAGACAGGGAGCCTG-TGCTCCAGCACCTA  845
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  AGAGATAGAGTCTGAAAAGGGAGACAGGGAGCCTGTTGCTCCAGCACCTA  850

seq1  AGTTGTCACTGAATCTGGCGTCTGGAACCATGTCAACCTCAAC-TTGACA  894
      | || |||||||||||||||||||||||||||||| ||||||| ||||||
seq2  A-TTTTCACTGAATCTGGCGTCTGGAACCATGTCACCCTCAACTTTGACA  899

seq1  AAGATCTTTTGTGGATCCCCACTCCAGACCTACCTACCATATCTGTGTC-  943
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGATCTTTTGTGGATCCCCACTCCAGACCTACCTACCATATCTGTGTCT  949

seq1  TCCAGGAGAGTGACCCAGAATCGGGTGACCTCAAAAAGCTAACAAG-TTT  992
      |||||||||||||||||||||  ||||||||||||||||||||||| |||
seq2  TCCAGGAGAGTGACCCAGAATTCGGTGACCTCAAAAAGCTAACAAGTTTT  999

seq1  GAGAA-TCCTAGGTATAACTTCTTCAAAATTAGTGTT--CAGGTCCACAG  1039
      ||||| || ||||||| |||||||| ||||| |||||  ||||||  |||
seq2  GAGAATTCTTAGGTAT-ACTTCTTC-AAATTTGTGTTTCCAGGTCACCAG  1047

seq1  -CTCTCAGTTGAATTTTCCTC-ATGGATAAACCAGGTATAATGGTTTAAG  1087
       || ||||||||||||||||| ||||||||||||||||| ||||||| ||
seq2  CCTTTCAGTTGAATTTTCCTCTATGGATAAACCAGGTAT-ATGGTTTTAG  1096

seq1  CTCACAA  1094
      |||||||
seq2  CTCACAA  1103