BAC Information

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BAC

Clone NameB6Ng01-085B23
Chromosome14 (Build37)
Map Location 20,160,544 - 20,161,648
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2e1, LOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996
Downstream geneEG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085B23.bB6Ng01-085B23.g
ACCDH898878DH898879
length1,1281,098
definitionDH898878|Mus musculus domesticus DNA, BAC clone: B6Ng01-085B23, 5' end.DH898879|Mus musculus domesticus DNA, BAC clone: B6Ng01-085B23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcacgaaacccatctggtcctggggtttttttggttggaagac
ttttaatgagtgatgctagttctttaggggttatgtgactgtttagattg
tttatcttatcctgatttaactttggtacctggtaactgcttagaaaatt
gttcatctcatccagattttccagttttgttaagtttaggctgtgtcatt
ggatctgatgttttttttttaatttcctcagtttttgatgttattactcc
cttttcagttctgattttattaatttgaatactgtctgtgtgccctgcgg
ttagtctagctaagggtttatctttcttgttgattttctcaaggaaccag
ctcctggctttctttattctttgttttgttctttttgtttctactttctt
gcattatttattccttgaatcatttgtcaaatactagtgagttgctcaga
ttccatgatcttgtaggattttttttgtgttattgttgttgaagtccagc
tttaacccatggtggtatgataatacatagaagggttatttaaaaaattt
tatagctatatagatttgcttagtggatgtgtttatggtcagttttggaa
aaggttcacagaggtgctgagaagaaggtatgtttcattgtgtctgaata
aagtgtttttgaaaaatattatttagaagccacagcagcagcggtcgcca
tcttggtccgggacccgccgaacttaggaaattagtctgaacaggtgaga
gggtgcgccagagaacctgacagcttctggaacaggcggaagcacagagg
cgctgaggcagcacccttttgtgggctggggacagctcagccaccgtccg
gaccggagacaggtgcccgctcggctggggaggcggcttaagccacagca
gcatcggtctgcatcttggtctgagaccgctgaacttaggaatttagtct
gaacaagtgagaggtgcgccagagatctgatagcttctgaacatgcagag
cacagaggcgttgatgcatcacccttttgtgtcgtgtcagcagccaccgt
ctgaacggaggacagtgtccgtcctgctggggaggcggtctagccagcat
atcggtcttctactgttcctgacactct
gaattcaatgttgtgatgggagacacccaccgcagctccgtgctcaggaa
caaaaggagagagagagagagaaaaaaaaagacacatgagtgttaggaga
cagatgggccatcgactttctatattatctctttcactgctgaacgaaaa
aagacaaacaaatctttttaggtctttggagaccagcgggccaccctcac
aggtggagtatttcctttatgaatgtggaggtaaccatgtgagccttgta
gaaattgtaaaaaacggagaagcaccttgtactgcgggaagaggaaatgg
cagaagggtgaaccgaaagcagcagctaggaatcatttgtctctgcatga
gatgcatctttcttttcatttcctttcccacactgactgtccccattact
cccacttcctctttatttcagccaaaggagttagagatcaatagatacgg
cttcacctgacattccttcattgtgccatacttagaaatcagggaatcgg
gccacccaggggccaagacagggtgacttagtacagggcagggtgattag
actttccaaacatgttcagggacagtttatgggttaattattaggatatt
agaataagcagaccttttctgggaggattttattctatcattagaatttg
acagtattctaaaatgcatcggcggtagctgctccctacccgataaaata
ttgatgcttaggaataagattctcttggctgataacgcttatcaaacgag
gctcagaatgtaaaaagggaggcagaacactagtggctgagagaaaacac
tatctgattttttttaaaagcatttctgaatttagaaaaagaaacctttc
cctatgttatattgtttagggagcttgttgttttaaggaagcatctttca
cgggacttctaagaatagacaggaggattggttgcttgtagactaccgtg
caagtgagtctagcatcaggtcagctgctgctagattcacagaggctggc
acacatctgctatagacttcttgttgacttctgtgatgataatcacttat
tcttcattctgtccgaccacaccctgatatttataaacaaacttctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_20160544_20161648
seq2: B6Ng01-085B23.g_68_1165

seq1  GAATTCAATGTTGTGATGGGAGACACCCACCGCAGCTCCGTGCTCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTTGTGATGGGAGACACCCACCGCAGCTCCGTGCTCAGGAA  50

seq1  CAAAAGGAGAGAGAGAGAGAGAAAAAAAAAGACACATGAGTGTTAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGAGAGAGAGAGAGAAAAAAAAAGACACATGAGTGTTAGGAGA  100

seq1  CAGATGGGCCATCGACTTTCTATATTATCTCTTTCACTGCTGAACGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGCCATCGACTTTCTATATTATCTCTTTCACTGCTGAACGAAAA  150

seq1  AAGACAAACAAATCTTTTTAGGTCTTTGGAGACCAGCGGGCCACCCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAACAAATCTTTTTAGGTCTTTGGAGACCAGCGGGCCACCCTCAC  200

seq1  AGGTGGAGTATTTCCTTTATGAATGTGGAGGTAACCATGTGAGCCTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGTATTTCCTTTATGAATGTGGAGGTAACCATGTGAGCCTTGTA  250

seq1  GAAATTGTAAAAAACGGAGAAGCACCTTGTACTGCGGGAAGAGGAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTAAAAAACGGAGAAGCACCTTGTACTGCGGGAAGAGGAAATGG  300

seq1  CAGAAGGGTGAACCGAAAGCAGCAGCTAGGAATCATTTGTCTCTGCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGGTGAACCGAAAGCAGCAGCTAGGAATCATTTGTCTCTGCATGA  350

seq1  GATGCATCTTTCTTTTCATTTCCTTTCCCACACTGACTGTCCCCATTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATCTTTCTTTTCATTTCCTTTCCCACACTGACTGTCCCCATTACT  400

seq1  CCCACTTCCTCTTTATTTCAGCCAAAGGAGTTAGAGATCAATAGATACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCCTCTTTATTTCAGCCAAAGGAGTTAGAGATCAATAGATACGG  450

seq1  CTTCACCTGACATTCCTTCATTGTGCCATACTTAGAAATCAGGGAATCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCTGACATTCCTTCATTGTGCCATACTTAGAAATCAGGGAATCGG  500

seq1  GCCACCCAGGGGCCAAGACAGGGTGACTTAGTACAGGGCAGGGTGATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCAGGGGCCAAGACAGGGTGACTTAGTACAGGGCAGGGTGATTAG  550

seq1  ACTTTCCAAACATGTTCAGGGACAGTTTATGGGTTAATTATTAGGATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCAAACATGTTCAGGGACAGTTTATGGGTTAATTATTAGGATATT  600

seq1  AGAATAAGCAGACCTTTTCTGGGAGGATTTTATTCTATCATTAGAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGCAGACCTTTTCTGGGAGGATTTTATTCTATCATTAGAATTTG  650

seq1  ACAGTATTCTAAAATGCATCGGCGGTAGCTGCTCCCTACCCGATAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTCTAAAATGCATCGGCGGTAGCTGCTCCCTACCCGATAAAATA  700

seq1  TTGATGCTTAGGAATAAGATTCTCTTGGCTGATAACGCTTATCAAACGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTTAGGAATAAGATTCTCTTGGCTGATAACGCTTATCAAACGAG  750

seq1  GCTCAGAATGTAAAAAGGGAGGCAGAACACTAGTGGCTGAGAGAAAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAATGTAAAAAGGGAGGCAGAACACTAGTGGCTGAGAGAAAACAC  800

seq1  TATCTGA-TTTTTTTAAAAGCATTTCTGAATTTAGAAAAAGAAACC-TTC  848
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  TATCTGATTTTTTTTAAAAGCATTTCTGAATTTAGAAAAAGAAACCTTTC  850

seq1  CCTATG-TATATTGTTTAGGGAGCTTG-TGTTTTAAGGAAGCATCTTTCA  896
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTATGTTATATTGTTTAGGGAGCTTGTTGTTTTAAGGAAGCATCTTTCA  900

seq1  CGGGACTTCTAAGAATAGAACAGGAGGATTGGTTGC-TGTAGACTACCGT  945
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  CGGGACTTCTAAGAATAG-ACAGGAGGATTGGTTGCTTGTAGACTACCGT  949

seq1  GCAAGTGAGTCTAGCACCAAGGTCAGCTGCTGCTAGATTCACAGAGGCTG  995
      |||||||||||||||| | |||||||||||||||||||||||||||||| 
seq2  GCAAGTGAGTCTAGCATC-AGGTCAGCTGCTGCTAGATTCACAGAGGCT-  997

seq1  GGAACACATCTTGCTTATAGACTTCTTTGTTTGACTTCTGTGATTGTATA  1045
      || ||||||| ||| ||||||||||||   ||||||||||||||   |||
seq2  GGCACACATC-TGC-TATAGACTTCTT--GTTGACTTCTGTGAT--GATA  1041

seq1  ATTCACCTATATCTTCATTCCTGT-CGACCACACCCTGATTATTTATAAA  1094
      | |||| ||| |||||||| |||| |||||||||||||| ||||||||||
seq2  A-TCACTTAT-TCTTCATT-CTGTCCGACCACACCCTGA-TATTTATAAA  1087

seq1  CAAACTTCTCA  1105
      |||||||||||
seq2  CAAACTTCTCA  1098