BAC Information

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BAC

Clone NameB6Ng01-085F03
Chromosome14 (Build37)
Map Location 3,487,520 - 3,604,987
singlet/doubletdoublet
Overlap geneLOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565
Upstream geneLOC100040452, LOC100040657, LOC100040671, LOC100040682, LOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755, LOC100040767, LOC100040779
Downstream geneLOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085F03.bB6Ng01-085F03.g
ACCDH899026DH899027
length9211,140
definitionDH899026|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F03, 5' end.DH899027|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,487,520 - 3,488,441)(3,603,821 - 3,604,987)
sequence
gaattctcaaatattcctataccatgcctgcctggacactgccatgctcc
agccttgatgataatggactgaacctctgaacctgtaagccagccccaat
taaatgctctccctctgttgccttggtcaaggtgtctcttcatagaaatg
aaaccctaactaagacagtatttcttgctacatacatgtcttattgttgt
tttgagatagggccttacaagataggccagactatagtcaaatttaccat
cctcttgcctcagccttctgagcagtataattaaaatacccattgccagc
ttgtacaatgttttcaattaagaaaatgcctagacacttttcaaatgtct
caagtaaagcaatgtccattttagtatgcaaatactttagtgtatcatga
aatatttacaaaaagtatttcaaacaaggttaattacttaaacactggcc
ttttgttagtttggttttgagacagagtttgatgtagcccaggctggcct
gggactccctttgtaaatgaggatagtcttgaagcacttatcccctgcct
ctatgccctgagcattagaattccaggtgagtgacactgcaccttgtttc
tatgcaatactgggaactaaatccagagcttcatgcatgctagcaaagca
gtctaccagtgagctgcctccccagcccaaactgttctgcactgttcact
gcctgccaaacaggggaatgaccccggggatcttcaatgggaactaaagt
cagtgggcttgttctaatgataatattcacattgcaagtatttcataact
atgcagtcattcatggaaagatatttgtgtgtgtgtgtgcacgcgcgtgc
acgtcacaagcacatattcgatgaggtcatggtcagctgtcttcttcttc
ttcttctcctcctcctcctcc
gaattctttgtttagttttgagccccatttttaatggggttatttgacat
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatccttttccaatctgttggtggcctt
tttgtcttattgagagcctgccgttctttattacaccttggtggtacaca
cctctgcttactagaatctttaggaaattaagtgataggactaatataat
gacattgacaaggtccaccatctggcagtcacaggaaactcactaataca
ggactcatgcaggcaatttcaactgctccaaaagcttgactggtaggttg
cctttgcaatacaccagctgggtactatcctgtaaccctctatccttcta
ttctcttttgagcaaaatagagtgacaacgacaatagtagcagactagcg
ctcaagctaagatggatgctattgatagactttctctgagagataaactt
cacagaatcaggtggaagctgaaggaaagagatattattattattatcat
tattattattatttattttctttatttacatttcaaatgttatccccttt
cctagtttcctctctgtaaatagaggcatagaggaagaaagagttttatt
tagctggttttcaggtaataagtgaggggataggaactctccaccttaat
ctctaccctgtcatccaaacactgtccctttaactatgtaagaaaaccca
tgtgtagacctcaagaaatcagaaatcacgggtttgtggtgtggggtaca
tgttatataccaatagatcttttaaatggcccaacaaacatttgagtgaa
ataataaaaatgttaccattttgtggggtagtgggctgtgcacagacagc
ctggtctcagtcgaacaaaggtctggaccccagagactagatggatggtg
attccacctacatggacggaagtgttcatcatgtctctggctctggctct
gtcaagttacatcccacagcccacacaggagaggtgtgttgctatccgtc
acgtaggagagcccagcttcccaaatgagaggtactgctgccaacctgat
cacctcaaactgtatataaatcctattcaggaattaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_3487520_3488441
seq2: B6Ng01-085F03.b_50_970

seq1  GAATTCTCAAATATTCCTATACCATGCCTGCCTGGACACTGCCATGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATATTCCTATACCATGCCTGCCTGGACACTGCCATGCTCC  50

seq1  AGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  100

seq1  TAAATGCTCTCCCTCTGTTGCCTTGGTCAAGGTGTCTCTTCATAGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTCTCCCTCTGTTGCCTTGGTCAAGGTGTCTCTTCATAGAAATG  150

seq1  AAACCCTAACTAAGACAGTATTTCTTGCTACATACATGTCTTATTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTAACTAAGACAGTATTTCTTGCTACATACATGTCTTATTGTTGT  200

seq1  TTTGAGATAGGGCCTTACAAGATAGGCCAGACTATAGTCAAATTTACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATAGGGCCTTACAAGATAGGCCAGACTATAGTCAAATTTACCAT  250

seq1  CCTCTTGCCTCAGCCTTCTGAGCAGTATAATTAAAATACCCATTGCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCCTCAGCCTTCTGAGCAGTATAATTAAAATACCCATTGCCAGC  300

seq1  TTGTACAATGTTTTCAATTAAGAAAATGCCTAGACACTTTTCAAATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAATGTTTTCAATTAAGAAAATGCCTAGACACTTTTCAAATGTCT  350

seq1  CAAGTAAAGCAATGTCCATTTTAGTATGCAAATACTTTAGTGTATCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAGCAATGTCCATTTTAGTATGCAAATACTTTAGTGTATCATGA  400

seq1  AATATTTACAAAAAGTATTTCAAACAAGGTTAATTACTTAAACACTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACAAAAAGTATTTCAAACAAGGTTAATTACTTAAACACTGGCC  450

seq1  TTTTGTTAGTTTGGTTTTGAGACAGAGTTTGATGTAGCCCAGGCTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAGTTTGGTTTTGAGACAGAGTTTGATGTAGCCCAGGCTGGCCT  500

seq1  GGGACTCCCTTTGTAAATGAGGATAGTCTTGAAGCACTTATCCCCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCCCTTTGTAAATGAGGATAGTCTTGAAGCACTTATCCCCTGCCT  550

seq1  CTATGCCCTGAGCATTAGAATTCCAGGTGAGTGACACTGCACCTTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCTGAGCATTAGAATTCCAGGTGAGTGACACTGCACCTTGTTTC  600

seq1  TATGCAATACTGGGAACTAAATCCAGAGCTTCATGCATGCTAGCAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATACTGGGAACTAAATCCAGAGCTTCATGCATGCTAGCAAAGCA  650

seq1  GTCTACCAGTGAGCTGCCTCCCCAGCCCAAACTGTTCTGCACTGTTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCAGTGAGCTGCCTCCCCAGCCCAAACTGTTCTGCACTGTTCACT  700

seq1  GCCTGCCAAACAGGGGAATGACCCCGGGGATCTTCAATGGGAACTAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAAACAGGGGAATGACCCCGGGGATCTTCAATGGGAACTAAAGT  750

seq1  CAGTGGGCTTGTTCTAATGATAATATTCACATTGCAAGTATTTCATAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCTTGTTCTAATGATAATATTCACATTGCAAGTATTTCATAACT  800

seq1  ATGCAGTCATTCATGGAAAGATATTTGTGTGTGTGTGTGCACGCGCGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCATTCATGGAAAGATATTTGTGTGTGTGTGTGCACGCGCGTGC  850

seq1  ACGTCACAAGCACATATTCGATGAGGTCATGGTCAGCTGTCTTCTTCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCACAAGCACATATTCGATGAGGTCATGGTCAGCTGTCTTCTTCTTC  900

seq1  TTCTTCCTCCTCCTCCTCCTCC  922
      ||||| ||||||||||||||||
seq2  TTCTT-CTCCTCCTCCTCCTCC  921

seq1: chr14_3603821_3604987
seq2: B6Ng01-085F03.g_67_1206 (reverse)

seq1  CCTTTAATTCCCTGGATAGGATTTATATACAGTTTTGGGGGTGATTCAGG  50
      ||||||||| |||| ||||||||||||||||||||  | ||||| |||||
seq2  CCTTTAATT-CCTGAATAGGATTTATATACAGTTT--GAGGTGA-TCAGG  46

seq1  GTTTGACAGCAGGTACCTCTCATTTGTGGGAAGGCTTGGTGCTGCTCCTA  100
        ||| ||||| ||||||||||||  |||||| |||  | ||| ||||||
seq2  --TTGGCAGCA-GTACCTCTCATT--TGGGAA-GCT--GGGCT-CTCCTA  87

seq1  CGTGACGGATAGCCACACACCTCTCCTGTGTGGGCTGTGGGGATGGTAAC  150
      ||||||||||||| |||||||||||||||||||||||| ||||| |||||
seq2  CGTGACGGATAGCAACACACCTCTCCTGTGTGGGCTGT-GGGAT-GTAAC  135

seq1  TTTGACAGGAGCCAGAAGGCCAGGAGACATGATGGAACACCTTCCGTCCC  200
       |||||| ||||||||  |||| |||||||||| ||||| ||||||| ||
seq2  -TTGACA-GAGCCAGA--GCCA-GAGACATGAT-GAACA-CTTCCGT-CC  177

seq1  ATGTAGGTGGAAATCACCATCCATCTAGTCTCTGGGGTTCCAGACCTTTG  250
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  ATGTAGGTGG-AATCACCATCCATCTAGTCTCTGGGG-TCCAGACCTTTG  225

seq1  TTCGACTGGAGACCAGGCTGTCTGTGCACAGCCCACTACCCCACAAAATG  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACT-GAGACCAGGCTGTCTGTGCACAGCCCACTACCCCACAAAATG  274

seq1  GTAACATTTTTATTATTTCACTCAAATGTTTGTTGGGCCATTTAAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTAACATTTTTATTATTTCACTCAAATGTTTGTTGGGCCATTT-AAAAGA  323

seq1  TCTATTGGTATATAACATGTACCCCACACCACAAACCCCTGATTTCTGAT  400
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTATTGGTATATAACATGTACCCCACACCACAAACCCGTGATTTCTGAT  373

seq1  TTCTTGAGGTCTACACATGGGTTTTCTTACATAGTTAAAGGGACAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGGTCTACACATGGGTTTTCTTACATAGTTAAAGGGACAGTGTT  423

seq1  TGGATGACAGGGTAGAGATTAAGGTGGAGAGTTCCTATCCCCTCACTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGACAGGGTAGAGATTAAGGTGGAGAGTTCCTATCCCCTCACTTAT  473

seq1  TACCTGAAAACCAGCTAAATAAAACTCTTTCTTCCTCTATGCCTCTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAAAACCAGCTAAATAAAACTCTTTCTTCCTCTATGCCTCTATTT  523

seq1  ACAGAGAGGAAACTAGGAAAGGGGATAACATTTGAAATGTAAATAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGGAAACTAGGAAAGGGGATAACATTTGAAATGTAAATAAAGAA  573

seq1  AATAAATAATAATAATAATGATAATAATAATAATATCTCTTTCCTTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAATAATAATAATGATAATAATAATAATATCTCTTTCCTTCAGC  623

seq1  TTCCACCTGATTCTGTGAAGTTTATCTCTCAGAGAAAGTCTATCAATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTGATTCTGTGAAGTTTATCTCTCAGAGAAAGTCTATCAATAGC  673

seq1  ATCCATCTTAGCTTGAGCGCTAGTCTGCTACTATTGTCGTTGTCACTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTTAGCTTGAGCGCTAGTCTGCTACTATTGTCGTTGTCACTCTA  723

seq1  TTTTGCTCAAAAGAGAATAGAAGGATAGAGGGTTACAGGATAGTACCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCAAAAGAGAATAGAAGGATAGAGGGTTACAGGATAGTACCCAG  773

seq1  CTGGTGTATTGCAAAGGCAACCTACCAGTCAAGCTTTTGGAGCAGTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTATTGCAAAGGCAACCTACCAGTCAAGCTTTTGGAGCAGTTGAA  823

seq1  ATTGCCTGCATGAGTCCTGTATTAGTGAGTTTCCTGTGACTGCCAGATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGCATGAGTCCTGTATTAGTGAGTTTCCTGTGACTGCCAGATGG  873

seq1  TGGACCTTGTCAATGTCATTATATTAGTCCTATCACTTAATTTCCTAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTTGTCAATGTCATTATATTAGTCCTATCACTTAATTTCCTAAAG  923

seq1  ATTCTAGTAAGCAGAGGTGTGTACCACCAAGGTGTAATAAAGAACGGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTAAGCAGAGGTGTGTACCACCAAGGTGTAATAAAGAACGGCAG  973

seq1  GCTCTCAATAAGACAAAAAGGCCACCAACAGATTGGAAAAGGATCTTTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAATAAGACAAAAAGGCCACCAACAGATTGGAAAAGGATCTTTAC  1023

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCA  1073

seq1  AGAAGGTGGACTCCAGAATGTCAAATAACCCCATTAAAAATGGGGCTCAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGGACTCCAGAATGTCAAATAACCCCATTAAAAATGGGGCTCAA  1123

seq1  AACTAAACAAAGAATTC  1167
      |||||||||||||||||
seq2  AACTAAACAAAGAATTC  1140