BAC Information

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BAC

Clone NameB6Ng01-085H02
Chromosome14 (Build37)
Map Location 94,953,221 - 95,164,132
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085H02.bB6Ng01-085H02.g
ACCDH899112DH899113
length1,0701,197
definitionDH899112|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H02, 5' end.DH899113|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,163,059 - 95,164,132)(94,953,221 - 94,954,418)
sequence
gaattcaaaggagagaggaaagagagatatggtgagagaagtgagaaatg
gtaaatttaaaatacaatataaaaataaataatccctgtgagaaactttg
aagaccatttgattgaaacagaaagtgaatatgaatgcagatgaaatgga
atctgactcatgatttgtaatatggttaccggctcctttgttttggaata
ctttatagaaaagaggaaaacaacagctagaatatatcttaaaactattt
ggataatttaagagtccagcagtggctttcacctagatgattggaatgaa
aaatcacaagactctatcatattttttataaattttagcatatatgggtt
taaaataactatggaaaaataattatgtatttatatgaatatttaatata
aaatacatttctcattttctttttaagcatgcctttcagaaagctggaaa
atcaagggacattgaggtgacagaggctcataagtctttagattacttaa
attgaaattagcaaaagaatgagagatgaacacagatgcggaaattgtgc
agaaatcaactaaaagtaccaatagtaagaactaaataaaataatcataa
aaatgatatataatatatagaaagattaaaattaagtctgaatgaagtta
tttaatttgagataattttgatgtttacacacaagaaaaataaatggaaa
ttcaatgaaggcaccagaagatttggtgtgatttgtgactcaagttgaag
atagtctttcacccagactaaacaaattgattgatgaacttaagtaggtg
aaatatttttagaatggacaaatcagaagcctgatgtatttttctctttg
gatttatactcagacatagccagttttctggatggtacattattattaac
actcaaaatagcctatgtgtttactggcatatttgtttgtattgatatgt
tgaattctcaactaagatctctgatgcattaactgaaattgacctctcta
ggtttgaaaattcatgaactgaactttctctcacttcttaatactttgca
tggaattagatcaaatgatt
gaattcttattaaattaggaatgtcattcatagtttattcatcaaagaag
attaagtgggttctaaagtacaatatttaaagtatttaaatatcatataa
ggattcatatttcatatttttcaaaaatattactgttgatataatattag
aatgactacttaggttgttttgaatagtaagtgaaaatacacaagaccaa
aattttgtaactagaaattgaaattattaaatttgaaaattaaaccattt
aaaaattccagagcataagacattctagtgtttttattaattgttgtaga
attttataagctgtgtcttgaccattgactacgtttccttttccactatg
tccttcccatagtgtaaaacacatcactttcatacacagaaattaaatac
acttatcctttaacagggcatctgtattttcaaagaaagtatatagaaat
catagttatatgaatgtttaatattgaaaggcagcaaagtcattgctgag
gttaatttatggcataaggtaggaggtgttaaagctctaaagcatttgga
gatttatggtgccatggcaactaatttaaaaaaaaaatcacaatagacct
tgtaaaatgctaactccacaaggcactgagaaatcttgaaattgcagaca
tttaattctaatgcttatttaatttcctagagggctctgctaatttttgt
taattctctatgattaaattcttaaacctacaaaatgaaaaattgtaata
attagaataaaatattgtagatgtttccccataaataccaaataatatga
ttataatattttagaaaccacatgaacttctatgccagaaatgttttgat
gttacataggattgactagagattataacattttttgaaatcataaataa
aattgtacattaatgaattatgtaccccttcattgaatattctattcatt
gcaggccctatgcttcataataattatctaacatttgtttcataatttag
tatggcacctatgaagtgcttataataattaccataggcctgcagaacaa
cactttaggttacatttattgacttcattgttatcttgtttaaaaggagc
cgcaaataaatcagcccacttctactgttggaattatttaaaaataagtg
gagctgcccggctttttgctgaacattatactgcaggtattttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_95163059_95164132
seq2: B6Ng01-085H02.b_35_1104 (reverse)

seq1  AATCATTTGTATCTAAATCCAATGCAAAGTATT-AGATGGGAGAGAAAGT  49
      ||||||||| |||||| ||| |||||||||||| ||| | ||||||||||
seq2  AATCATTTG-ATCTAATTCC-ATGCAAAGTATTAAGAAGTGAGAGAAAGT  48

seq1  TCAGTTCATGATATCTCAAACCTAGAGAGGTCAATTTCAGTTAATGCATC  99
      |||||||||||  | |||||||||||||||||||||||||||||||||||
seq2  TCAGTTCATGAATTTTCAAACCTAGAGAGGTCAATTTCAGTTAATGCATC  98

seq1  AGAGATCTTAAGTTGAAAATTCAACAATATCAATACAAAACAAAATATGC  149
      ||||||||| |||||| |||||||| |||||||||||||   ||||||||
seq2  AGAGATCTT-AGTTGAGAATTCAAC-ATATCAATACAAA--CAAATATGC  144

seq1  CAGTAAACACATAGGCTATTTTGAGTTGTTAATAATAATGTACCATCCAG  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGTAAACACATAGGCTATTTTGAG-TGTTAATAATAATGTACCATCCAG  193

seq1  AAAACTTGGCTATGTCTGAGTATAAATCC-AAGGGAAAAATACATCAGGC  248
      ||||| ||||||||||||||||||||||| ||| ||||||||||||||||
seq2  AAAAC-TGGCTATGTCTGAGTATAAATCCAAAGAGAAAAATACATCAGGC  242

seq1  TTCTGATTTGTCCATTCT-AAAATATTTCACCTACTTAAGTTCATCAATC  297
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGATTTGTCCATTCTAAAAATATTTCACCTACTTAAGTTCATCAATC  292

seq1  AATTTGTTTAGTCTGGGTGAAAGACTATCTTCAACTTGAGTCACAAATCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTAGTCTGGGTGAAAGACTATCTTCAACTTGAGTCACAAATCA  342

seq1  CACCAAATCTTCTGGTGCCTTCATTGAATTTCCATTTA-TTTTCTTGTGT  396
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACCAAATCTTCTGGTGCCTTCATTGAATTTCCATTTATTTTTCTTGTGT  392

seq1  GTAAACATCAAAATTATCTCAAATTAAATAACTTCATTCAGACTTAATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATCAAAATTATCTCAAATTAAATAACTTCATTCAGACTTAATTT  442

seq1  TAATCTTTCTATATATTATATATCATTTTTATGATTATTTTATTTAGTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTCTATATATTATATATCATTTTTATGATTATTTTATTTAGTTC  492

seq1  TTACTATTGGTACTTTTAGTTGATTTCTGCACAATTTCCGCATCTGTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTGGTACTTTTAGTTGATTTCTGCACAATTTCCGCATCTGTGTT  542

seq1  CATCTCTCATTCTTTTGCTAATTTCAATTTAAGTAATCTAAAGACTTATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCATTCTTTTGCTAATTTCAATTTAAGTAATCTAAAGACTTATG  592

seq1  AGCCTCTGTCACCTCAATGTCCCTTGATTTTCCAGCTTTCTGAAAGGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGTCACCTCAATGTCCCTTGATTTTCCAGCTTTCTGAAAGGCAT  642

seq1  GCTTAAAAAGAAAATGAGAAATGTATTTTATATTAAATATTCATATAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAAAGAAAATGAGAAATGTATTTTATATTAAATATTCATATAAAT  692

seq1  ACATAATTATTTTTCCATAGTTATTTTAAACCCATATATGCTAAAATTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTATTTTTCCATAGTTATTTTAAACCCATATATGCTAAAATTTA  742

seq1  TAAAAAATATGATAGAGTCTTGTGATTTTTCATTCCAATCATCTAGGTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATATGATAGAGTCTTGTGATTTTTCATTCCAATCATCTAGGTGA  792

seq1  AAGCCACTGCTGGACTCTTAAATTATCCAAATAGTTTTAAGATATATTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTGCTGGACTCTTAAATTATCCAAATAGTTTTAAGATATATTCT  842

seq1  AGCTGTTGTTTTCCTCTTTTCTATAAAGTATTCCAAAACAAAGGAGCCGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTGTTTTCCTCTTTTCTATAAAGTATTCCAAAACAAAGGAGCCGG  892

seq1  TAACCATATTACAAATCATGAGTCAGATTCCATTTCATCTGCATTCATAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATATTACAAATCATGAGTCAGATTCCATTTCATCTGCATTCATAT  942

seq1  TCACTTTCTGTTTCAATCAAATGGTCTTCAAAGTTTCTCACAGGGATTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCTGTTTCAATCAAATGGTCTTCAAAGTTTCTCACAGGGATTAT  992

seq1  TTATTTTTATATTGTATTTTAAATTTACCATTTCTCACTTCTCTCACCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATATTGTATTTTAAATTTACCATTTCTCACTTCTCTCACCAT  1042

seq1  ATCTCTCTTTCCTCTCTCCTTTGAATTC  1074
      ||||||||||||||||||||||||||||
seq2  ATCTCTCTTTCCTCTCTCCTTTGAATTC  1070

seq1: chr14_94953221_94954418
seq2: B6Ng01-085H02.g_68_1264

seq1  GAATTCTTATTAAATTAGGAATGTCATTCATAGTTTATTCATCAAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTAAATTAGGAATGTCATTCATAGTTTATTCATCAAAGAAG  50

seq1  ATTAAGTGGGTTCTAAAGTACAATATTTAAAGTATTTAAATATCATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGGGTTCTAAAGTACAATATTTAAAGTATTTAAATATCATATAA  100

seq1  GGATTCATATTTCATATTTTTCAAAAATATTACTGTTGATATAATATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATATTTCATATTTTTCAAAAATATTACTGTTGATATAATATTAG  150

seq1  AATGACTACTTAGGTTGTTTTGAATAGTAAGTGAAAATACACAAGACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTACTTAGGTTGTTTTGAATAGTAAGTGAAAATACACAAGACCAA  200

seq1  AATTTTGTAACTAGAAATTGAAATTATTAAATTTGAAAATTAAACCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTAACTAGAAATTGAAATTATTAAATTTGAAAATTAAACCATTT  250

seq1  AAAAATTCCAGAGCATAAGACATTCTAGTGTTTTTATTAATTGTTGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCCAGAGCATAAGACATTCTAGTGTTTTTATTAATTGTTGTAGA  300

seq1  ATTTTATAAGCTGTGTCTTGACCATTGACTACGTTTCCTTTTCCACTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAAGCTGTGTCTTGACCATTGACTACGTTTCCTTTTCCACTATG  350

seq1  TCCTTCCCATAGTGTAAAACACATCACTTTCATACACAGAAATTAAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCATAGTGTAAAACACATCACTTTCATACACAGAAATTAAATAC  400

seq1  ACTTATCCTTTAACAGGGCATCTGTATTTTCAAAGAAAGTATATAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCCTTTAACAGGGCATCTGTATTTTCAAAGAAAGTATATAGAAAT  450

seq1  CATAGTTATATGAATGTTTAATATTGAAAGGCAGCAAAGTCATTGCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTATATGAATGTTTAATATTGAAAGGCAGCAAAGTCATTGCTGAG  500

seq1  GTTAATTTATGGCATAAGGTAGGAGGTGTTAAAGCTCTAAAGCATTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTATGGCATAAGGTAGGAGGTGTTAAAGCTCTAAAGCATTTGGA  550

seq1  GATTTATGGTGCCATGGCAACTAATTTAAAAAAAAAATCACAATAGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATGGTGCCATGGCAACTAATTTAAAAAAAAAATCACAATAGACCT  600

seq1  TGTAAAATGCTAACTCCACAAGGCACTGAGAAATCTTGAAATTGCAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGCTAACTCCACAAGGCACTGAGAAATCTTGAAATTGCAGACA  650

seq1  TTTAATTCTAATGCTTATTTAATTTCCTAGAGGGCTCTGCTAATTTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCTAATGCTTATTTAATTTCCTAGAGGGCTCTGCTAATTTTTGT  700

seq1  TAATTCTCTATGATTAAATTCTTAAACCTACAAAATGAAAAATTGTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCTATGATTAAATTCTTAAACCTACAAAATGAAAAATTGTAATA  750

seq1  ATTAGAATAAAATATTGTAGATGTTTCCCCATAAATACCAAATAATATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATAAAATATTGTAGATGTTTCCCCATAAATACCAAATAATATGA  800

seq1  TTATAATATTTTAGAAACCACATGAACTTCTATGCCAGAAATGTTTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATATTTTAGAAACCACATGAACTTCTATGCCAGAAATGTTTTGAT  850

seq1  GTTACATAGGATTGACTAGAGATTATAACA-TTTTTGAAATCATAAATAA  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTACATAGGATTGACTAGAGATTATAACATTTTTTGAAATCATAAATAA  900

seq1  AA-TGTACATTAATGAA-TATGTACCCC-TCATTGAATA-TCTATTCATT  945
      || |||||||||||||| |||||||||| |||||||||| ||||||||||
seq2  AATTGTACATTAATGAATTATGTACCCCTTCATTGAATATTCTATTCATT  950

seq1  GCAGGCCCTATGCTTCAATAATAA-TATCTAACATTTGTTCCATAATTTA  994
      |||||||||||||||| ||||||| ||||||||||||||| |||||||||
seq2  GCAGGCCCTATGCTTC-ATAATAATTATCTAACATTTGTTTCATAATTTA  999

seq1  GTATGGCACCTATTGAGTGCTTTATATAATTACCATA-GCCTGCAGAACA  1043
      |||||||||||||  |||||||   |||||||||||| ||||||||||||
seq2  GTATGGCACCTATGAAGTGCTTATAATAATTACCATAGGCCTGCAGAACA  1049

seq1  ACAC-TTAGGTTACATTTAATTGACTTCATTGTTATCTGGTTAAAAAGGA  1092
      |||| ||||||||||||| ||||||||||||||||||| ||| |||||||
seq2  ACACTTTAGGTTACATTT-ATTGACTTCATTGTTATCTTGTTTAAAAGGA  1098

seq1  GCCGCAAATAAAATCAGCCCACTCCTACTGTTGGATATATTTTTAAAAAT  1142
      ||||||||| ||||||||||||| |||||||||||   ||| || |||| 
seq2  GCCGCAAAT-AAATCAGCCCACTTCTACTGTTGGA---ATTATTTAAAAA  1144

seq1  TAAATGTGAGCTGCCTGCTTTTTCTGCATGACTATTATACTGCAGGTATT  1192
      ||| || |||||||| |  |||| ||| |||  |||||||||||||||||
seq2  TAAGTG-GAGCTGCCCGGCTTTT-TGC-TGAACATTATACTGCAGGTATT  1191

seq1  TTTTAA  1198
      ||||||
seq2  TTTTAA  1197