BAC Information

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BAC

Clone NameB6Ng01-085M08
Chromosome14 (Build37)
Map Location 117,532,508 - 117,643,590
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085M08.bB6Ng01-085M08.g
ACCDH899348DH899349
length1,1431,090
definitionDH899348|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M08, 5' end.DH899349|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,642,442 - 117,643,590)(117,532,508 - 117,533,598)
sequence
gaattcttaaatctgccctaacatcaccattcagagactctcaagaattt
acagtgagtgtatcccatgttcgtaatcatcctgcctggtgtccccactg
cttgagctataacactaacttgagatacttaaattttgggaaacatataa
tctacagtgtatgggaggaggacacagcttccagcatggaagcactacat
tcccaataactagagaccactttccaagtggagcatcctcatctcaagtg
gctaaagtcaaggtagattgactccaagattgacttaccacctttgggga
ccctaggggaccctagagggagggcaagctagcacaagaaagaagagaac
tgttggcaatctgcctgctctcaggataccttcttttacatcccttcaca
gaatttagcccgacacaatggtgaagacttgtaattggatcgtttatgct
tctagccagattgctacactgagatacacactgagcacattacgatagtc
tcccacatggaaggctgtctagatcctaggcccaagtctgaatcactctg
ggtggaagcccagatgagtacaagagcagccaggtatggcaggaacatct
aagaatggtcttaccgaaggccaggaaggccaagagagcactggcttcat
tcagttccttgttatctctagtaacctgagagcatgctccaaacagttgg
attctgattgggccagttggactggccagtttcccttccttcctctgcct
caccctaatttctgtcttaagtcttttaacaagttcccaggcaagcagtg
taatggtacctcaacctcagctacacactctgaccatacagaatcacggc
cagctcttggccaccatgtcagctcctagctcttaagatcccacacatta
atctgtagaaagcttctcgataaaccttaccctctgtggtctgctggact
tcattcttgagccttgcatgacagaatccagagaccacggaacgtttgtg
tgactgtcagcatctcacacaatagtcttcgaaattaaggtcccctcagt
caagagcaaaggtttcatcaaattcagagtccccacacattcacttgacc
aaatgaattcaggtaaatttccaattgaatgcaaagcttctac
gaattcctgggaaatgtgcttttccttcactccatgatgtgacaccagca
gaagtccacccattttgtgatctaataatattccacccagtgtaattttc
cctctatttacatacaaagccattagcagacctttcagttggttctgcgt
tttttgtaataaataatgttatttggaacacgtgttgccaattctatttg
tgaatatatatttgagttctcttgagtacacatcttggaatggaattgct
ggatcacccagtgagtctgtgttgaaactgtgctgggagtagctgcccac
aatctcaccgagcagccttgccccttagtgggctactggtgcatgggaag
ccccgtgctcccgactgcagcgatggttggtcttgtttgctcctttgatt
tcactcacccaagggttataatgtcctgtagtcagtggctctgactttca
attctctgatggtcaacaatgctgaatgtcttcacaaggacctagtggtc
acttgtgcagcatcttcagaaaagtgcacgtttagttaatttgtctgcaa
atagtcttttatcttgcccattctctcttcattttctagatagtttcttt
tgattttgtttttagttttagtgattttggtgtaattttcatttattttt
taaatatatacttttgatatttcatatgactcttcccaagttcagaacaa
tgagtggtttagtcttgttttttttgtttgtttgtttgtttgttttttgt
tttttttccctaagaattttattccgttagtcttcacacttgcttctgtt
gaggtcacattggcatttctgatgattctggtctcttgctccatcctcct
gtctatagataaaatataaaatattatagtctcacttctttaaaacagtt
tggcactgtgaatcagaaaaggtagaattattttattctagactttcagt
tttcttccattatgtcttgtctgtctccatgtcagaagcttattgtcttg
gctcctgtggtgtaatagcaagctttgaagtagccactgaggctcctggc
agctttttcacttgagataccgttcagggcctttgggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117642442_117643590
seq2: B6Ng01-085M08.b_44_1186 (reverse)

seq1  GTAGAAGCCTTTGCATTCCAATTGGAAATTTTTCCCTGAATCCATTTGGT  50
      ||||||| ||||||||| ||||||||||  ||| ||||||| ||||||||
seq2  GTAGAAG-CTTTGCATT-CAATTGGAAA--TTTACCTGAATTCATTTGGT  46

seq1  CAGTGGAATGTGTGGTGACTCTGAATTTGATGGAAACCTTTGCTCTTGAC  100
      ||   |||||||||| ||||||||||||||| ||||||||||||||||||
seq2  CAAGTGAATGTGTGGGGACTCTGAATTTGAT-GAAACCTTTGCTCTTGAC  95

seq1  TGAGGGGACCTTTAATTCGGAGACTATTGTGTGAGATGCTGACAGTCACA  150
      |||||||||||| | |||| ||||||||||||||||||||||||||||||
seq2  TGAGGGGACCTTAATTTCGAAGACTATTGTGTGAGATGCTGACAGTCACA  145

seq1  CAAACGTTCCGTGGTCTCTGGATTCTGTTCATGCAAGGCTCAAGAATGAA  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAACGTTCCGTGGTCTCTGGATTCTG-TCATGCAAGGCTCAAGAATGAA  194

seq1  GTCCAGCAGACCACAGAGGGTAAGGTTTATCGAGAAGCTTTCTACAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCAGACCACAGAGGGTAAGGTTTATCGAGAAGCTTTCTACAGATT  244

seq1  AATGTGTGGGATCTTAAGAGCTAGGAGCTGACATGGTGGCCAAGAGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGGGATCTTAAGAGCTAGGAGCTGACATGGTGGCCAAGAGCTGG  294

seq1  CCGTGATTCTGTATGGTCAGAGTGTGTAGCTGAGGTTGAGGTACCATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGATTCTGTATGGTCAGAGTGTGTAGCTGAGGTTGAGGTACCATTAC  344

seq1  ACTGCTTGCCTGGGAACTTGTTAAAAGACTTAAGACAGAAATTAGGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGCCTGGGAACTTGTTAAAAGACTTAAGACAGAAATTAGGGTGA  394

seq1  GGCAGAGGAAGGAAGGGAAACTGGCCAGTCCAACTGGCCCAATCAGAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGAAGGAAGGGAAACTGGCCAGTCCAACTGGCCCAATCAGAATC  444

seq1  CAACTGTTTGGAGCATGCTCTCAGGTTACTAGAGATAACAAGGAACTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTTGGAGCATGCTCTCAGGTTACTAGAGATAACAAGGAACTGAA  494

seq1  TGAAGCCAGTGCTCTCTTGGCCTTCCTGGCCTTCGGTAAGACCATTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAGTGCTCTCTTGGCCTTCCTGGCCTTCGGTAAGACCATTCTTA  544

seq1  GATGTTCCTGCCATACCTGGCTGCTCTTGTACTCATCTGGGCTTCCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCTGCCATACCTGGCTGCTCTTGTACTCATCTGGGCTTCCACCC  594

seq1  AGAGTGATTCAGACTTGGGCCTAGGATCTAGACAGCCTTCCATGTGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATTCAGACTTGGGCCTAGGATCTAGACAGCCTTCCATGTGGGAG  644

seq1  ACTATCGTAATGTGCTCAGTGTGTATCTCAGTGTAGCAATCTGGCTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCGTAATGTGCTCAGTGTGTATCTCAGTGTAGCAATCTGGCTAGAA  694

seq1  GCATAAACGATCCAATTACAAGTCTTCACCATTGTGTCGGGCTAAATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAACGATCCAATTACAAGTCTTCACCATTGTGTCGGGCTAAATTCT  744

seq1  GTGAAGGGATGTAAAAGAAGGTATCCTGAGAGCAGGCAGATTGCCAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGATGTAAAAGAAGGTATCCTGAGAGCAGGCAGATTGCCAACAG  794

seq1  TTCTCTTCTTTCTTGTGCTAGCTTGCCCTCCCTCTAGGGTCCCCTAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTTTCTTGTGCTAGCTTGCCCTCCCTCTAGGGTCCCCTAGGGT  844

seq1  CCCCAAAGGTGGTAAGTCAATCTTGGAGTCAATCTACCTTGACTTTAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGGTGGTAAGTCAATCTTGGAGTCAATCTACCTTGACTTTAGCC  894

seq1  ACTTGAGATGAGGATGCTCCACTTGGAAAGTGGTCTCTAGTTATTGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGATGAGGATGCTCCACTTGGAAAGTGGTCTCTAGTTATTGGGAA  944

seq1  TGTAGTGCTTCCATGCTGGAAGCTGTGTCCTCCTCCCATACACTGTAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGCTTCCATGCTGGAAGCTGTGTCCTCCTCCCATACACTGTAGAT  994

seq1  TATATGTTTCCCAAAATTTAAGTATCTCAAGTTAGTGTTATAGCTCAAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTTCCCAAAATTTAAGTATCTCAAGTTAGTGTTATAGCTCAAGC  1044

seq1  AGTGGGGACACCAGGCAGGATGATTACGAACATGGGATACACTCACTGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGACACCAGGCAGGATGATTACGAACATGGGATACACTCACTGTA  1094

seq1  AATTCTTGAGAGTCTCTGAATGGTGATGTTAGGGCAGATTTAAGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGAGAGTCTCTGAATGGTGATGTTAGGGCAGATTTAAGAATTC  1143

seq1: chr14_117532508_117533598
seq2: B6Ng01-085M08.g_68_1157

seq1  GAATTCCTGGGAAATGTGCTTTTCCTTCACTCCATGATGTGACACCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGAAATGTGCTTTTCCTTCACTCCATGATGTGACACCAGCA  50

seq1  GAAGTCCACCCATTTTGTGATCTAATAATATTCCACCCAGTGTAATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCACCCATTTTGTGATCTAATAATATTCCACCCAGTGTAATTTTC  100

seq1  CCTCTATTTACATACAAAGCCATTAGCAGACCTTTCAGTTGGTTCTGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTTACATACAAAGCCATTAGCAGACCTTTCAGTTGGTTCTGCGT  150

seq1  TTTTTGTAATAAATAATGTTATTTGGAACACGTGTTGCCAATTCTATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAATAAATAATGTTATTTGGAACACGTGTTGCCAATTCTATTTG  200

seq1  TGAATATATATTTGAGTTCTCTTGAGTACACATCTTGGAATGGAATTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATATTTGAGTTCTCTTGAGTACACATCTTGGAATGGAATTGCT  250

seq1  GGATCACCCAGTGAGTCTGTGTTGAAACTGTGCTGGGAGTAGCTGCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACCCAGTGAGTCTGTGTTGAAACTGTGCTGGGAGTAGCTGCCCAC  300

seq1  AATCTCACCGAGCAGCCTTGCCCCTTAGTGGGCTACTGGTGCATGGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACCGAGCAGCCTTGCCCCTTAGTGGGCTACTGGTGCATGGGAAG  350

seq1  CCCCGTGCTCCCGACTGCAGCGATGGTTGGTCTTGTTTGCTCCTTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTGCTCCCGACTGCAGCGATGGTTGGTCTTGTTTGCTCCTTTGATT  400

seq1  TCACTCACCCAAGGGTTATAATGTCCTGTAGTCAGTGGCTCTGACTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACCCAAGGGTTATAATGTCCTGTAGTCAGTGGCTCTGACTTTCA  450

seq1  ATTCTCTGATGGTCAACAATGCTGAATGTCTTCACAAGGACCTAGTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGATGGTCAACAATGCTGAATGTCTTCACAAGGACCTAGTGGTC  500

seq1  ACTTGTGCAGCATCTTCAGAAAAGTGCACGTTTAGTTAATTTGTCTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGCAGCATCTTCAGAAAAGTGCACGTTTAGTTAATTTGTCTGCAA  550

seq1  ATAGTCTTTTATCTTGCCCATTCTCTCTTCATTTTCTAGATAGTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTTTATCTTGCCCATTCTCTCTTCATTTTCTAGATAGTTTCTTT  600

seq1  TGATTTTGTTTTTAGTTTTAGTGATTTTGGTGTAATTTTCATTTATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGTTTTTAGTTTTAGTGATTTTGGTGTAATTTTCATTTATTTTT  650

seq1  TAAATATATACTTTTGATATTTCATATGACTCTTCCCAAGTTCAGAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATACTTTTGATATTTCATATGACTCTTCCCAAGTTCAGAACAA  700

seq1  TGAGTGGTTTAGTCTTGTTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGTGGTTTAGTCTTGTTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTG-  749

seq1  TTTTTTTTCCCTAAGAATTTTATTCCGTTAGTCTTCACACTTGCTTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCCTAAGAATTTTATTCCGTTAGTCTTCACACTTGCTTCTGT  799

seq1  TGAGGTCACATTGGCATTTCTGATGATTCTGGTCTCTTGCTCCATCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCACATTGGCATTTCTGATGATTCTGGTCTCTTGCTCCATCCTCC  849

seq1  TGTCTATAGATAAAATAT-AAATATTATAGTCTCACTTCTTTAAAACAGT  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTCTATAGATAAAATATAAAATATTATAGTCTCACTTCTTTAAAACAGT  899

seq1  TTGGCACTG-GGAGCAGAAAAGGTAGGAATTATTTTATTTCTAGACTTTC  948
      ||||||||| | | ||||||||||| ||||||||||| ||||||||||||
seq2  TTGGCACTGTGAATCAGAAAAGGTA-GAATTATTTTA-TTCTAGACTTTC  947

seq1  AGTTTTCCTCCATTATTGTCTTTGTCTGTCTTCATGTCAGAAGCTTATTG  998
      ||||||| ||||||| |||| |||||||||| ||||||||||||||||||
seq2  AGTTTTCTTCCATTA-TGTC-TTGTCTGTCTCCATGTCAGAAGCTTATTG  995

seq1  TCTTGGCTCCTGTGGTGTAATAGCAAGCCTTGAAGTAGCACATGAGGCTC  1048
      |||||||||||||||||||||||||||| ||||||||||   ||||||||
seq2  TCTTGGCTCCTGTGGTGTAATAGCAAGCTTTGAAGTAGCCACTGAGGCTC  1045

seq1  CT-GCAGC-TTTTCACTTGAAGTAACCGTTCA-GGCTCTTGGGTTG  1091
      || ||||| |||||||||| ||  |||||||| |||  ||||||||
seq2  CTGGCAGCTTTTTCACTTG-AGATACCGTTCAGGGCCTTTGGGTTG  1090