BAC Information

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BAC

Clone NameB6Ng01-085P01
Chromosome14 (Build37)
Map Location 71,042,113 - 71,172,330
singlet/doubletdoublet
Overlap geneNpm2, Xpo7, LOC668443
Upstream geneLoxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17
Downstream geneDok2, Gfra2, LOC100043132, LOC100043136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085P01.bB6Ng01-085P01.g
ACCDH899474DH899475
length9741,023
definitionDH899474|Mus musculus domesticus DNA, BAC clone: B6Ng01-085P01, 5' end.DH899475|Mus musculus domesticus DNA, BAC clone: B6Ng01-085P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,171,785 - 71,172,330)(71,042,113 - 71,043,138)
sequence
gaattcatgaatctaaaggaataaaggcagccacactatgagtcagctta
tcaggcagattcctgagctccaggtcagcctaggacagagggaggttagg
cccaggtgtggtcagggcagtgtctcacctaactctcttattgtctgttc
ttaacaaaggtctgtctagacctctgaattcttttgcaatattaagaaaa
aaaaatgtatgtttgctgtctcctaagaatcaaaggtctggggtcatggg
atgtatacttgattatcctacgagataattgaaagggaaacctggagtaa
atgactggagtaatatgtaaaataaaagactggacctgtgctcttcagga
aataaatgaatgagctatccagagaattttttaggaaaaaaaaagtgaac
tacttggagaacagacagacatgcacacacagagacacagagacagatag
acagacaacacacacacaaggaggcaggacatagacagagaaatctctta
gaatagcaagcaagcagaacagagatctccagagagaaagcagacagaca
aagagagagacagactggaaaagctttatcaagcagaacatagctcggac
ccacgatttgacttcaagtcgttctttccactgctcccagaaacccattc
tctcagaacccctctccatgccgaggctggtccttgccatctactgtctc
accagtcacgttttattctctgacaaaggtggggacgagggggacataag
catacctgcttgcaactttcctgagatcacagaactgttaggggtggatg
ggtaggccattaatgcaatgggggttttggtttgttcgtttgtttcattg
gttggtttttgatcttttgagacggagtcctatgtttcacgggctagtct
ccaatacatgtgccatcatacctagctagtacaactttttttaatcgtgt
gtgtgtgtgtgagagagagagggg
gaattctggctcgggtgggaattcccagaagcagccttaaaaggaggagc
ctccctccagggagcaggggtgggcttggcttgagcggctgctggctcag
cttctctgctgtcaccccttgccactaggaaggaggggtaaggctgtgaa
cagtgggtgcaacaggttgaggccagagatggggagtcaggtgcagctct
tgaaagatctcaatgctcacaaaaactggtttgaaatggagatccgaaga
cgagtgggagtcacttttgcctgggccctcgtagtctatttttgtttttt
aaaggtgggtggtgtggtcagctattggagtactggaggaccaaatgaaa
tgacagtgagtcagtgaggaaatccctaagatgtctgggccttatttggg
gggttgacacccagccctaggttctcagccccaattcaccagtgtcccca
agcagttgcctggaatgcagtgtccagcagtatggacatatgaccactag
tctcatgtagctggctacccaagtcagctatactgactgcagtttgctga
taggaaattggcggattgggaggtagccggctcagaataagccagctggt
gagtgaaggggccacagtcccagaatctaggctcttcctgttccttggaa
ttgcgacttcaccctccacgtcccagcctgccactggctttatttttatt
ttagcgctcagagaccttgatagattttttttttttcctcttctcccatc
ttctacctgagacagggtctcaccatgtagcatcaactgacctagaattc
actgtgtagaccaggcttgcctccagtttcacagacccacctgcctctct
cctgagcgctgtgattaaaggtgtgctccagtgcatttgacaggctttag
tggactgtaatatgacaggcagccggggatgtgaaggctggtgaccagtt
ctctccttacagacagtgggtgtgctgagctgaaatgagggcgatctggg
agtctaactctggctccctttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_71171785_71172330
seq2: B6Ng01-085P01.b_473_1019 (reverse)

seq1  CCCCTCTCTCTCTCACACACACACACACGATTAAAAAAAGTTGTACTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTCTCTCACACACACACACACGATTAAAAAAAGTTGTACTAGC  50

seq1  TAGGTATGATGGCACATGTATTGGAGACTAGCCCGTGAAACATAGGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATGATGGCACATGTATTGGAGACTAGCCCGTGAAACATAGGACTC  100

seq1  CGTCTCAAAAGATCAAAAACCAACCAATGAAACAAACGAACAAACCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCAAAAGATCAAAAACCAACCAATGAAACAAACGAACAAACCAAAA  150

seq1  -CCCCATTGCATTAATGGCCTACCCATCCACCCCTAACAGTTCTGTGATC  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATTGCATTAATGGCCTACCCATCCACCCCTAACAGTTCTGTGATC  200

seq1  TCAGGAAAGTTGCAAGCAGGTATGCTTATGTCCCCCTCGTCCCCACCTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAGTTGCAAGCAGGTATGCTTATGTCCCCCTCGTCCCCACCTTT  250

seq1  GTCAGAGAATAAAACGTGACTGGTGAGACAGTAGATGGCAAGGACCAGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAATAAAACGTGACTGGTGAGACAGTAGATGGCAAGGACCAGCC  300

seq1  TCGGCATGGAGAGGGGTTCTGAGAGAATGGGTTTCTGGGAGCAGTGGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCATGGAGAGGGGTTCTGAGAGAATGGGTTTCTGGGAGCAGTGGAAA  350

seq1  GAACGACTTGAAGTCAAATCGTGGGTCCGAGCTATGTTCTGCTTGATAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGACTTGAAGTCAAATCGTGGGTCCGAGCTATGTTCTGCTTGATAAA  400

seq1  GCTTTTCCAGTCTGTCTCTCTCTTTGTCTGTCTGCTTTCTCTCTGGAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCAGTCTGTCTCTCTCTTTGTCTGTCTGCTTTCTCTCTGGAGAT  450

seq1  CTCTGTTCTGCTTGCTTGCTATTCTAAGAGATTTCTCTGTCTATGTCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCTGCTTGCTTGCTATTCTAAGAGATTTCTCTGTCTATGTCCTG  500

seq1  CCTCCTTGTGTGTGTGTTGTCTGTCTATCTGTCTCTGTGTCTCTGTG  546
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGTGTGTGTGTTGTCTGTCTATCTGTCTCTGTGTCTCTGTG  547

seq1: chr14_71042113_71043138
seq2: B6Ng01-085P01.g_69_1091

seq1  GAATTCTGGCTCGGGTGGGAATTCCCAGAAGCAGCCTTAAAAGGAGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTCGGGTGGGAATTCCCAGAAGCAGCCTTAAAAGGAGGAGC  50

seq1  CTCCCTCCAGGGAGCAGGGGTGGGCTTGGCTTGAGCGGCTGCTGGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCAGGGAGCAGGGGTGGGCTTGGCTTGAGCGGCTGCTGGCTCAG  100

seq1  CTTCTCTGCTGTCACCCCTTGCCACTAGGAAGGAGGGGTAAGGCTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGCTGTCACCCCTTGCCACTAGGAAGGAGGGGTAAGGCTGTGAA  150

seq1  CAGTGGGTGCAACAGGTTGAGGCCAGAGATGGGGAGTCAGGTGCAGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTGCAACAGGTTGAGGCCAGAGATGGGGAGTCAGGTGCAGCTCT  200

seq1  TGAAAGATCTCAATGCTCACAAAAACTGGTTTGAAATGGAGATCCGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATCTCAATGCTCACAAAAACTGGTTTGAAATGGAGATCCGAAGA  250

seq1  CGAGTGGGAGTCACTTTTGCCTGGGCCCTCGTAGTCTATTTTTGTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGGGAGTCACTTTTGCCTGGGCCCTCGTAGTCTATTTTTGTTTTTT  300

seq1  AAAGGTGGGTGGTGTGGTCAGCTATTGGAGTACTGGAGGACCAAATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGGTGGTGTGGTCAGCTATTGGAGTACTGGAGGACCAAATGAAA  350

seq1  TGACAGTGAGTCAGTGAGGAAATCCCTAAGATGTCTGGGCCTTATTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGAGTCAGTGAGGAAATCCCTAAGATGTCTGGGCCTTATTTGGG  400

seq1  GGGTTGACACCCAGCCCTAGGTTCTCAGCCCCAATTCACCAGTGTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGACACCCAGCCCTAGGTTCTCAGCCCCAATTCACCAGTGTCCCCA  450

seq1  AGCAGTTGCCTGGAATGCAGTGTCCAGCAGTATGGACATATGACCACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGCCTGGAATGCAGTGTCCAGCAGTATGGACATATGACCACTAG  500

seq1  TCTCATGTAGCTGGCTACCCAAGTCAGCTATACTGACTGCAGTTTGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTAGCTGGCTACCCAAGTCAGCTATACTGACTGCAGTTTGCTGA  550

seq1  TAGGAAATTGGCGGATTGGGAGGTAGCCGGCTCAGAATAAGCCAGCTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATTGGCGGATTGGGAGGTAGCCGGCTCAGAATAAGCCAGCTGGT  600

seq1  GAGTGAAGGGGCCACAGTCCCAGAATCTAGGCTCTTCCTGTTCCTTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGGGGCCACAGTCCCAGAATCTAGGCTCTTCCTGTTCCTTGGAA  650

seq1  TTGCGACTTCACCCTCCACGTCCCAGCCTGCCACTGGCTTTATTTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGACTTCACCCTCCACGTCCCAGCCTGCCACTGGCTTTATTTTTATT  700

seq1  TTAGCGCTCAGAGACCTTGATAGA-TTTTTTTTTTTCCTCTTCTCCCATC  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAGCGCTCAGAGACCTTGATAGATTTTTTTTTTTTCCTCTTCTCCCATC  750

seq1  TTCTACCTGAGACAGGGTCTCACCATGTAGCATCAACTGACCTAGAATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTGAGACAGGGTCTCACCATGTAGCATCAACTGACCTAGAATTC  800

seq1  ACTGTGTAGACCAGGCTTGCCTCCAG-TTCACAGACCCACCTGCCTCTCT  848
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTGTGTAGACCAGGCTTGCCTCCAGTTTCACAGACCCACCTGCCTCTCT  850

seq1  CCTGAGCGCTGTGATTAAAGGTGTGCTCCAGTGCATTTGACAGGCTTAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTGAGCGCTGTGATTAAAGGTGTGCTCCAGTGCATTTGACAGGCTTTAG  900

seq1  TGGACTGTAATATGACAGGCAGCCGGGGATGTGAAGGCTGGTGACCAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGTAATATGACAGGCAGCCGGGGATGTGAAGGCTGGTGACCAGTT  950

seq1  CTCTCCTTACAGACAGGTGGGTGGTGCTGAGCTGAAAGGAGGGGCGATCT  998
      ||||||||||||||| |||||| |||||||||||||| || |||||||||
seq2  CTCTCCTTACAGACA-GTGGGT-GTGCTGAGCTGAAATGA-GGGCGATCT  997

seq1  GGGGAGTCTAAACTCTGGCTCCCTTTCC  1026
       |||||||| ||||||||||||||||||
seq2  -GGGAGTCT-AACTCTGGCTCCCTTTCC  1023