BAC Information

Click to search

BAC

Clone NameB6Ng01-086P13
Chromosome14 (Build37)
Map Location 85,489,098 - 85,605,773
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603, LOC100043301
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086P13.bB6Ng01-086P13.g
ACCDH900228DH900229
length1,1441,152
definitionDH900228|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P13, 5' end.DH900229|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,604,613 - 85,605,773)(85,489,098 - 85,490,252)
sequence
gaattcaatttatttggaagctataatttcaaccatgcttattacaaaga
actagaataatgatccaggagatatagatgctagaatatagataaatgat
aggtaaatataaatacctgacatataaataatagacatctatacatgtaa
gacttcaaaagtatattctatatacagatatttacatgtatattatgtaa
ttttataattaaaaatatttgttcagaattattatcctgaagcaattgca
attttaaggcttaggtggatttttttttctccaagcaaaattatgattaa
tctaaaaatgttcagacattattatatctggccaaggaataggaatagtg
taccaaataaaacatttcttaatcagttcagtaaaaaagatctttggaaa
acaattagaaatgctgccaaattgcttgctacttgacaaatattttgtgg
ctcataaattctctttgaaggctttaggcaaatttaatcagagtaagtga
aaaaatattctcctaagattaggaagacacacagaaacacacacacacac
acacacacacacacacacacacacacacacacacacatacacacacacac
atacacacacacacaagaaatctcggttttattagatttatcaaattatg
tgctaaactatttctcctcctttgatgcatgttttaaaaaagaagtcttc
gtttcagagtttaatactttcaagaaagttgagcaagttacatcttgggt
ttgaaaatattaacacttactattttcttctgagtttatctctagaagga
gttacatttatctgttaggataaggttcccatacttgttcttgcaaatag
tttatctctatttacacagccaatccagggaataaacatctgtgtaaagt
ggcataagtagccatggcatcaaaggagtgtagtagtagagaaatatttg
aaagattaaaatcaggccacttgcatttttattttacacattagagagat
gttgggatagatttgccatgcatgtctagatataggcaattgaaagaata
gtagcatttttctttatggaagagagttaccacacagcaatgaggaaaaa
aaaacataaaagttgaacattcagaagtttttctttaagctaac
gaattcacaacgatccttctcttttatgatccatgttccaatttgctatt
ttaaaaattgataggatgagaaaaagaattaacatttatcaagttcttct
tttataaatggcatccaatctacacaaataagtggtttaaagatcttttt
cgttaaagttgtcactactccatcagcattagagagctgctgctttgtta
tatggagatgctgagacccaattgatttatggctatgataaccatcattt
aaactctgaaattgacttttggtgagataagttgagtgatgatttcagtg
ggaatgctatagtagatgaacacaagctaagaacatcagtgaagactgat
tgctatgagcatcacaaagcataagataaccagacattctgggtttctca
ttatcatggaataaataggaaatcatcaccaccatgcaagattattaagt
ttttcaagtgaatgcaaagatgatactatttttatttaagagattattgc
tatttacaacaatgtttgttagactgaatcaaaatataatgaacttaagt
ccgagaatatgattaaaagatttcataaatggaagctttcaccataaaaa
tagaaatggctctgaatttcattatatcaatggtaagaaataagaattaa
aactagagaaggaaaatgtaacaaagtgtcaaatttttgagtagtataga
catttcaatatatgaaacaaatttcttgtttcaatgtgaactcaaataaa
agcagaatctttttttaagtagttaaactgcttagattgtaaactgtgag
tgagaaatttctgggaaaagacaagagagttgttaactttgttatataag
attttgacatatgttgtttatttaacattttatttatttgagtttgttat
aaagctaattttttcaaaaattataaacatgtctctgtgtgacttaaaat
gatctaaaaaacacaaaattgtgaaggatggaagttagaatggaataaaa
ctgattaacaaaacatgccttcttataattgaggagttgtttataaaaat
attgaaaacatattaaaatcttaaaccatataggactcatcacctcagta
acaagtttttattgtcacggagatattgcacttttcactcatttttctca
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85604613_85605773
seq2: B6Ng01-086P13.b_47_1190 (reverse)

seq1  GTTAGCTATAAAGAAAAAACCTACATTGAATGTTCAACCCTTTTAATGTT  50
      ||||||| ||||||||||  || |  ||||||||||||   ||| |||||
seq2  GTTAGCT-TAAAGAAAAA--CTTC--TGAATGTTCAAC---TTTTATGTT  42

seq1  TTTTTTTTCCCTCATTGCTGTGTGGTACCTCTTCTTCCCAATAAAGAAAA  100
      |||||||  |||||||||||||||||| ||| ||||||  ||||||||||
seq2  TTTTTTT--CCTCATTGCTGTGTGGTAACTC-TCTTCC--ATAAAGAAAA  87

seq1  ATGCTACTATTCTTTCCAATGGCTATTATCCTAGACATGCATGGCAAATC  150
      |||||||||||||||| | || ||| ||| ||||||||||||||||||||
seq2  ATGCTACTATTCTTTCAATTGCCTA-TAT-CTAGACATGCATGGCAAATC  135

seq1  TATCCCAACATCTCTCTTAATTGTGTAAAATAAAAATGCAAGTGGCCCTG  200
      |||||||||||||||||  | |||||||||||||||||||||||| ||||
seq2  TATCCCAACATCTCTCT--AATGTGTAAAATAAAAATGCAAGTGG-CCTG  182

seq1  ATTTT-ATCTTTCAAATATTTCTCTACTACTACACTCCTTTGATGCCATG  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATCTTTCAAATATTTCTCTACTACTACACTCCTTTGATGCCATG  232

seq1  GCTACTTATGCCACTTTACACAGATGTTTATTCCCTGGATTGGCTGTGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTATGCCACTTTACACAGATGTTTATTCCCTGGATTGGCTGTGTA  282

seq1  AATAGAGATAAACTATTTGCAAGAACAAGTATGGGAACCTTATCCTAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGATAAACTATTTGCAAGAACAAGTATGGGAACCTTATCCTAACA  332

seq1  GATAAATGTAACTCCTTCTAGAGATAAACTCAGAAGAAAATAGTAAGTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGTAACTCCTTCTAGAGATAAACTCAGAAGAAAATAGTAAGTGT  382

seq1  TAATATTTTCAAACCCAAGATGTAACTTGCTCAACTTTCTTGAAAGTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTCAAACCCAAGATGTAACTTGCTCAACTTTCTTGAAAGTATT  432

seq1  AAACTCTGAAACGAAGACTTCTTTTTTAAAACATGCATCAAAGGAGGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGAAACGAAGACTTCTTTTTTAAAACATGCATCAAAGGAGGAGA  482

seq1  AATAGTTTAGCACATAATTTGATAAATCTAATAAAACCGAGATTTCTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTAGCACATAATTTGATAAATCTAATAAAACCGAGATTTCTTGT  532

seq1  GTGTGTGTGTATGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTATGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGT  582

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTGTGTCTTCCTAATCTTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTGTGTCTTCCTAATCTTAG  632

seq1  GAGAATATTTTTTCACTTACTCTGATTAAATTTGCCTAAAGCCTTCAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATTTTTTCACTTACTCTGATTAAATTTGCCTAAAGCCTTCAAAG  682

seq1  AGAATTTATGAGCCACAAAATATTTGTCAAGTAGCAAGCAATTTGGCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTATGAGCCACAAAATATTTGTCAAGTAGCAAGCAATTTGGCAGC  732

seq1  ATTTCTAATTGTTTTCCAAAGATCTTTTTTACTGAACTGATTAAGAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAATTGTTTTCCAAAGATCTTTTTTACTGAACTGATTAAGAAATG  782

seq1  TTTTATTTGGTACACTATTCCTATTCCTTGGCCAGATATAATAATGTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGGTACACTATTCCTATTCCTTGGCCAGATATAATAATGTCTG  832

seq1  AACATTTTTAGATTAATCATAATTTTGCTTGGAGAAAAAAAAATCCACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTAGATTAATCATAATTTTGCTTGGAGAAAAAAAAATCCACCT  882

seq1  AAGCCTTAAAATTGCAATTGCTTCAGGATAATAATTCTGAACAAATATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTAAAATTGCAATTGCTTCAGGATAATAATTCTGAACAAATATTT  932

seq1  TTAATTATAAAATTACATAATATACATGTAAATATCTGTATATAGAATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATAAAATTACATAATATACATGTAAATATCTGTATATAGAATAT  982

seq1  ACTTTTGAAGTCTTACATGTATAGATGTCTATTATTTATATGTCAGGTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGAAGTCTTACATGTATAGATGTCTATTATTTATATGTCAGGTAT  1032

seq1  TTATATTTACCTATCATTTATCTATATTCTAGCATCTATATCTCCTGGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTACCTATCATTTATCTATATTCTAGCATCTATATCTCCTGGAT  1082

seq1  CATTATTCTAGTTCTTTGTAATAAGCATGGTTGAAATTATAGCTTCCAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTAGTTCTTTGTAATAAGCATGGTTGAAATTATAGCTTCCAAA  1132

seq1  TAAATTGAATTC  1161
      ||||||||||||
seq2  TAAATTGAATTC  1144

seq1: chr14_85489098_85490252
seq2: B6Ng01-086P13.g_70_1221

seq1  GAATTCACAACGATCCTTCTCTTTTATGATCCATGTTCCAATTTGCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACGATCCTTCTCTTTTATGATCCATGTTCCAATTTGCTATT  50

seq1  TTAAAAATTGATAGGATGAGAAAAAGAATTAACATTTATCAAGTTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTGATAGGATGAGAAAAAGAATTAACATTTATCAAGTTCTTCT  100

seq1  TTTATAAATGGCATCCAATCTACACAAATAAGTGGTTTAAAGATCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATGGCATCCAATCTACACAAATAAGTGGTTTAAAGATCTTTTT  150

seq1  CGTTAAAGTTGTCACTACTCCATCAGCATTAGAGAGCTGCTGCTTTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAAAGTTGTCACTACTCCATCAGCATTAGAGAGCTGCTGCTTTGTTA  200

seq1  TATGGAGATGCTGAGACCCAATTGATTTATGGCTATGATAACCATCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGATGCTGAGACCCAATTGATTTATGGCTATGATAACCATCATTT  250

seq1  AAACTCTGAAATTGACTTTTGGTGAGATAAGTTGAGTGATGATTTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGAAATTGACTTTTGGTGAGATAAGTTGAGTGATGATTTCAGTG  300

seq1  GGAATGCTATAGTAGATGAACACAAGCTAAGAACATCAGTGAAGACTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTATAGTAGATGAACACAAGCTAAGAACATCAGTGAAGACTGAT  350

seq1  TGCTATGAGCATCACAAAGCATAAGATAACCAGACATTCTGGGTTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGAGCATCACAAAGCATAAGATAACCAGACATTCTGGGTTTCTCA  400

seq1  TTATCATGGAATAAATAGGAAATCATCACCACCATGCAAGATTATTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGGAATAAATAGGAAATCATCACCACCATGCAAGATTATTAAGT  450

seq1  TTTTCAAGTGAATGCAAAGATGATACTATTTTTATTTAAGAGATTATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGTGAATGCAAAGATGATACTATTTTTATTTAAGAGATTATTGC  500

seq1  TATTTACAACAATGTTTGTTAGACTGAATCAAAATATAATGAACTTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAACAATGTTTGTTAGACTGAATCAAAATATAATGAACTTAAGT  550

seq1  CCGAGAATATGATTAAAAGATTTCATAAATGGAAGCTTTCACCATAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAATATGATTAAAAGATTTCATAAATGGAAGCTTTCACCATAAAAA  600

seq1  TAGAAATGGCTCTGAATTTCATTATATCAATGGTAAGAAATAAGAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGGCTCTGAATTTCATTATATCAATGGTAAGAAATAAGAATTAA  650

seq1  AACTAGAGAAGGAAAATGTAACAAAGTGTCAAATTTTTGAGTAGTATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGAAGGAAAATGTAACAAAGTGTCAAATTTTTGAGTAGTATAGA  700

seq1  CATTTCAATATATGAAACAAATTTCTTGTTTCAATGTGAACTCAAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAATATATGAAACAAATTTCTTGTTTCAATGTGAACTCAAATAAA  750

seq1  AGCAGAATCTTTTTTTAAGTAGTTAAACTGCTTAGATTGTAAACTGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATCTTTTTTTAAGTAGTTAAACTGCTTAGATTGTAAACTGTGAG  800

seq1  TGAGAAATTTCTGGG-AAAGACAAGAGAGTTGTTAACTTTGTTATATAAG  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGAAATTTCTGGGAAAAGACAAGAGAGTTGTTAACTTTGTTATATAAG  850

seq1  ATTTTGACATATGTTGTTTATTTAACATTTTATTTATTTGAGTTTGTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACATATGTTGTTTATTTAACATTTTATTTATTTGAGTTTGTTAT  900

seq1  AAAGCTAATTTTTTCAAAAATTATAAACATGTCTCTGTGTGACTTAAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAATTTTTTCAAAAATTATAAACATGTCTCTGTGTGACTTAAAAT  950

seq1  GATCTAAAAAAACACAAAATTGTGAAGGAATGGAAGTTAGAATGGAATAA  999
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  GATCT-AAAAAACACAAAATTGTGAAGG-ATGGAAGTTAGAATGGAATAA  998

seq1  AACTGATTAACAAAACATGCCTTCTTAT-ATTGA-GAGTTGTTTATAAAA  1047
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  AACTGATTAACAAAACATGCCTTCTTATAATTGAGGAGTTGTTTATAAAA  1048

seq1  AATAATGGAAAACATAATAAAATCTAAACCAATATAGAACTCATCA-CTC  1096
      |   || ||||||||| |||||||| || | |||||| |||||||| |||
seq2  A--TATTGAAAACATATTAAAATCTTAAACCATATAGGACTCATCACCTC  1096

seq1  AGGTAACAAATATTTA-TGTCACGAAAATAATTTTGCCACTTTTCA-TCA  1144
      | ||||||| | |||| ||||||| | |||   ||| ||||||||| |||
seq2  A-GTAACAAGTTTTTATTGTCACGGAGATA---TTG-CACTTTTCACTCA  1141

seq1  TTTTTCTCAGA  1155
      |||||||||||
seq2  TTTTTCTCAGA  1152