BAC Information

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BAC

Clone NameB6Ng01-087D05
Chromosome14 (Build37)
Map Location 9,894,042 - 10,071,792
singlet/doubletdoublet
Overlap geneLOC100041948
Upstream geneRpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087D05.bB6Ng01-087D05.g
ACCDH900397DH900398
length1,1471,146
definitionDH900397|Mus musculus domesticus DNA, BAC clone: B6Ng01-087D05, 5' end.DH900398|Mus musculus domesticus DNA, BAC clone: B6Ng01-087D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,070,637 - 10,071,792)(9,894,042 - 9,895,193)
sequence
gaattccatctcctggtctctgctggcacctgcatatgcccagcacacac
acatgaacatacaaaatagttaaatgattattttttttaaagagagaata
tgttcctgggttagtgaatattcttgtaatcctatcctcttccccatgct
ctcgactcttttcagggtttggaaatgttataatatattaagtttcttag
cttcattcatttggaagcatttcatattctgtgcacgcacacagagaggg
catcctgaagccagttccctacagtgttaagattgaagagcctagctcac
cggtaggcaattttctgaccttctgcattgctcctgcaccttcccactgg
gacagtagcatttagattcactttgtagaagatcctaacagggtatgtgg
ggaacaggcctgctaatgggatgaaatttgagacgtttccagatattctt
tccacagcactgagctataagcagcttaaatgacccacttttacaaataa
ctctggaaccttgctcttggagtcaagtgcagaagggagagtactgcttc
cccagtgagcattaaggcccacgtagcaaaggagagttgccaggaagaga
aaggaaatattcagttcaaatgaaagattcaaagaacgacttcgtgagtt
tggtaaaatgaaatggtttcaaaatgtggcatcatggaacttgaaaaacc
cttgaaactatatcaaatccatttattaggaatggctaaatgtcttttcc
agagtgggatagtgcagctgtttgccagaaaaacaaaagacaatactcac
tacgtaaaacactttataattttcaagtttttccttttactttaaaagta
aacttttgaagaaaatcatgcaccacccactatttcagataaagaggtat
gctttacaaattcttacttcattgctgtagattgaataaatgagaaacat
ccagtcccacacaggaagcccagccctaggatttagtgtcccaggcatta
tcactaacatggagtggtgagaacagacaggctcacctcatggttccagc
gtccttctctctgacacagagctcagttctaccaaccacaggagctattg
gcttccctcgaaagtagaaacagcaacccagcacgccagtgatccag
gaattctttgtagacttaaatcattaaaacatatgcaaaatgatatgagt
tgattctggaataagctaggactttgggttataggttgaatatgtgtaaa
tgccattgataatcctggcttacacccagagatccattttcctttttctt
gagcctgcccttcacctggtgacttcttagagtgattagggtgagatgct
tctggtgatacagggctttgcattattattaagaggagaaacttatatct
accaatagctattgtatgctgtgtccaaacagcagtcccatttaaaatac
aatgtgaatgatttgtttcatattcatggtttgctttattctggttctga
atatcaaacgatcaatgtcattatcctcaaagtaaataacgaatgtctaa
tctgttcctctttttcatagaagagtcatttattttcaatttttttctcc
acattgctcagaggttgtcatcattaacttctgccatttccagaacaaga
tttgcagcataatgacatatcaagcttaggaaatctttcctgtaacattt
taatgctattgtccaatttgactaaactatctactagttaaattttcagg
tatgactaatttaagggagtcagaaaactgctgttttctttatttgatca
ctaatcttttttctatttgcctttatatttcaaaggtattaggaaaaccc
catatttcctggggaaaaacatctactacttcttcaggttaagacactca
ttagctattcatgagtttagaatgcattatgcattaatttatttatctcc
ttaaagttcagcttttctccttgggatgttttctccccaaactaatttcc
taaaaacaaaatccaaatacattgagcatggttgaatatcaccaactgtg
atgcctgacctcatggcgtttattactctgagtgcagatggggagtgtgt
gaattctgtttaatctctgcatctctttaaaccaactacttgcactttaa
atatgaaattacagcagtaactttccctaatgctaacagtgagcacatga
agaggaagaaatcgtatttgttaaagtaattccaactgttttattgcctt
catccagataattatgtttaaagaatttgttcaatattgaattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_10070637_10071792
seq2: B6Ng01-087D05.b_45_1191 (reverse)

seq1  CTGGATACACTGGCTGTTGCTGTGTTGCTGTTTCTACTGTCTGAAGGGAA  50
      |||||| |||||||   ||||| ||||||||||||||| ||   ||||||
seq2  CTGGAT-CACTGGC--GTGCTGGGTTGCTGTTTCTACTTTC--GAGGGAA  45

seq1  GCCAATAGCTCCTGTGGTTGGTAGAACTGAGCTCTGTTGTTCAGAGAGAA  100
      |||||||||||||||||||||||||||||||||||||   |||||||| |
seq2  GCCAATAGCTCCTGTGGTTGGTAGAACTGAGCTCTGT--GTCAGAGAG-A  92

seq1  AGGACGCTGGGAACCATGAGGTGGAGCCTGTCTGTTCTCA-CACTCCATG  149
      |||||||| ||||||||||||| ||||||||||||||||| |||||||||
seq2  AGGACGCT-GGAACCATGAGGT-GAGCCTGTCTGTTCTCACCACTCCATG  140

seq1  TTAGTGATAATGCCTGGGACACTAAATCCTAGGGCTGGGCTTCCTGTGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATAATGCCTGGGACACTAAATCCTAGGGCTGGGCTTCCTGTGTG  190

seq1  GGACTGGATGTTTCTCATTTATTCAATCTACAGCAATGAAGTAAGAATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGATGTTTCTCATTTATTCAATCTACAGCAATGAAGTAAGAATTT  240

seq1  GTAAAGCATACCTCTTTATCTGAAATAGTGGGTGGTGCATGATTTTCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCATACCTCTTTATCTGAAATAGTGGGTGGTGCATGATTTTCTTC  290

seq1  AAAAGTTTACTTTTAAAGTAAAAGGAAAAACTTGAAAATTATAAAGTGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTACTTTTAAAGTAAAAGGAAAAACTTGAAAATTATAAAGTGTT  340

seq1  TTACGTAGTGAGTATTGTCTTTTGTTTTTCTGGCAAACAGCTGCACTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTAGTGAGTATTGTCTTTTGTTTTTCTGGCAAACAGCTGCACTATC  390

seq1  CCACTCTGGAAAAGACATTTAGCCATTCCTAATAAATGGATTTGATATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGGAAAAGACATTTAGCCATTCCTAATAAATGGATTTGATATAG  440

seq1  TTTCAAGGGTTTTTCAAGTTCCATGATGCCACATTTTGAAACCATTTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGGTTTTTCAAGTTCCATGATGCCACATTTTGAAACCATTTCAT  490

seq1  TTTACCAAACTCACGAAGTCGTTCTTTGAATCTTTCATTTGAACTGAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAACTCACGAAGTCGTTCTTTGAATCTTTCATTTGAACTGAATA  540

seq1  TTTCCTTTCTCTTCCTGGCAACTCTCCTTTGCTACGTGGGCCTTAATGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCTCTTCCTGGCAACTCTCCTTTGCTACGTGGGCCTTAATGCT  590

seq1  CACTGGGGAAGCAGTACTCTCCCTTCTGCACTTGACTCCAAGAGCAAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGAAGCAGTACTCTCCCTTCTGCACTTGACTCCAAGAGCAAGGT  640

seq1  TCCAGAGTTATTTGTAAAAGTGGGTCATTTAAGCTGCTTATAGCTCAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTTATTTGTAAAAGTGGGTCATTTAAGCTGCTTATAGCTCAGTG  690

seq1  CTGTGGAAAGAATATCTGGAAACGTCTCAAATTTCATCCCATTAGCAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAAGAATATCTGGAAACGTCTCAAATTTCATCCCATTAGCAGGC  740

seq1  CTGTTCCCCACATACCCTGTTAGGATCTTCTACAAAGTGAATCTAAATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCCACATACCCTGTTAGGATCTTCTACAAAGTGAATCTAAATGC  790

seq1  TACTGTCCCAGTGGGAAGGTGCAGGAGCAATGCAGAAGGTCAGAAAATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCCCAGTGGGAAGGTGCAGGAGCAATGCAGAAGGTCAGAAAATTG  840

seq1  CCTACCGGTGAGCTAGGCTCTTCAATCTTAACACTGTAGGGAACTGGCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCGGTGAGCTAGGCTCTTCAATCTTAACACTGTAGGGAACTGGCTT  890

seq1  CAGGATGCCCTCTCTGTGTGCGTGCACAGAATATGAAATGCTTCCAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCCCTCTCTGTGTGCGTGCACAGAATATGAAATGCTTCCAAATG  940

seq1  AATGAAGCTAAGAAACTTAATATATTATAACATTTCCAAACCCTGAAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCTAAGAAACTTAATATATTATAACATTTCCAAACCCTGAAAAG  990

seq1  AGTCGAGAGCATGGGGAAGAGGATAGGATTACAAGAATATTCACTAACCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAGAGCATGGGGAAGAGGATAGGATTACAAGAATATTCACTAACCC  1040

seq1  AGGAACATATTCTCTCTTTAAAAAAAATAATCATTTAACTATTTTGTATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATATTCTCTCTTTAAAAAAAATAATCATTTAACTATTTTGTATG  1090

seq1  TTCATGTGTGTGTGCTGGGCATATGCAGGTGCCAGCAGAGACCAGGAGAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTGTGTGCTGGGCATATGCAGGTGCCAGCAGAGACCAGGAGAT  1140

seq1  GGAATTC  1156
      |||||||
seq2  GGAATTC  1147

seq1: chr14_9894042_9895193
seq2: B6Ng01-087D05.g_68_1213

seq1  GAATTCTTTGTAGACTTAAATCATTAAAACATATGCAAAATGATATGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTAGACTTAAATCATTAAAACATATGCAAAATGATATGAGT  50

seq1  TGATTCTGGAATAAGCTAGGACTTTGGGTTATAGGTTGAATATGTGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGGAATAAGCTAGGACTTTGGGTTATAGGTTGAATATGTGTAAA  100

seq1  TGCCATTGATAATCCTGGCTTACACCCAGAGATCCATTTTCCTTTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGATAATCCTGGCTTACACCCAGAGATCCATTTTCCTTTTTCTT  150

seq1  GAGCCTGCCCTTCACCTGGTGACTTCTTAGAGTGATTAGGGTGAGATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGCCCTTCACCTGGTGACTTCTTAGAGTGATTAGGGTGAGATGCT  200

seq1  TCTGGTGATACAGGGCTTTGCATTATTATTAAGAGGAGAAACTTATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGATACAGGGCTTTGCATTATTATTAAGAGGAGAAACTTATATCT  250

seq1  ACCAATAGCTATTGTATGCTGTGTCCAAACAGCAGTCCCATTTAAAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAGCTATTGTATGCTGTGTCCAAACAGCAGTCCCATTTAAAATAC  300

seq1  AATGTGAATGATTTGTTTCATATTCATGGTTTGCTTTATTCTGGTTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAATGATTTGTTTCATATTCATGGTTTGCTTTATTCTGGTTCTGA  350

seq1  ATATCAAACGATCAATGTCATTATCCTCAAAGTAAATAACGAATGTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACGATCAATGTCATTATCCTCAAAGTAAATAACGAATGTCTAA  400

seq1  TCTGTTCCTCTTTTTCATAGAAGAGTCATTTATTTTCAATTTTTTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTCTTTTTCATAGAAGAGTCATTTATTTTCAATTTTTTTCTCC  450

seq1  ACATTGCTCAGAGGTTGTCATCATTAACTTCTGCCATTTCCAGAACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTCAGAGGTTGTCATCATTAACTTCTGCCATTTCCAGAACAAGA  500

seq1  TTTGCAGCATAATGACATATCAAGCTTAGGAAATCTTTCCTGTAACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCATAATGACATATCAAGCTTAGGAAATCTTTCCTGTAACATTT  550

seq1  TAATGCTATTGTCCAATTTGACTAAACTATCTACTAGTTAAATTTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTATTGTCCAATTTGACTAAACTATCTACTAGTTAAATTTTCAGG  600

seq1  TATGACTAATTTAAGGGAGTCAGAAAACTGCTGTTTTCTTTATTTGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTAATTTAAGGGAGTCAGAAAACTGCTGTTTTCTTTATTTGATCA  650

seq1  CTAATCTTTTTTCTATTTGCCTTTATATTTCAAAGGTATTAGGAAAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTTTTTCTATTTGCCTTTATATTTCAAAGGTATTAGGAAAACCC  700

seq1  CATATTTCCTGGGGAAAAACATCTACTACTTCTTCAGGTTAAGACACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCCTGGGGAAAAACATCTACTACTTCTTCAGGTTAAGACACTCA  750

seq1  TTAGCTATTCATGAGTTTAGAATGCATTATGCATTAATTTATTTATCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATTCATGAGTTTAGAATGCATTATGCATTAATTTATTTATCTCC  800

seq1  TTAAAGTTCAGCTTTTCTCCTTGGGATGTTTTCTCCCCAAACTAATTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTCAGCTTTTCTCCTTGGGATGTTTTCTCCCCAAACTAATTTCC  850

seq1  TAAAAACAAAATCCAAATACATTGAGCATGGTTGAATATCACCAACTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAATCCAAATACATTGAGCATGGTTGAATATCACCAACTGTG  900

seq1  ATGCCTGACCTCATGGCGTTTATTACTCTGAGGTGCAGATGGGGAGTGTG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGCCTGACCTCATGGCGTTTATTACTCTGA-GTGCAGATGGGGAGTGTG  949

seq1  TGAATTCTGTTTTAATCTCTGCAATTCTCTTTAAACCAACTACTTGCACT  1000
      ||||||||| |||||||||||||  |||||||||||||||||||||||||
seq2  TGAATTCTG-TTTAATCTCTGCA--TCTCTTTAAACCAACTACTTGCACT  996

seq1  TTAAATATGAAATTACAGCAGTAACTTTCCCTAATGCTAACAGTGGAGCA  1050
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAAATATGAAATTACAGCAGTAACTTTCCCTAATGCTAACAGT-GAGCA  1045

seq1  CATGAAGAGGAAGAAATTCGTAATTTGTTTAAAGTAATTCCAACTGTTTT  1100
      |||||||||||||||| |||| ||||| ||||||||||||||||||||||
seq2  CATGAAGAGGAAGAAA-TCGT-ATTTG-TTAAAGTAATTCCAACTGTTTT  1092

seq1  ATTGCCTTCCAATCCAAGATAATTATGTATAAAGAAATTTGT------TT  1144
      |||||||||  |||| |||||||||||| ||||| |||||||      ||
seq2  ATTGCCTTC--ATCC-AGATAATTATGTTTAAAG-AATTTGTTCAATATT  1138

seq1  AAATTATT  1152
       |||||||
seq2  GAATTATT  1146