BAC Information

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BAC

Clone NameB6Ng01-087F09
Chromosome14 (Build37)
Map Location 111,597,902 - 111,598,971
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087F09.bB6Ng01-087F09.g
ACCDH900490DH900491
length2671,053
definitionDH900490|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F09, 5' end.DH900491|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcaactaaggaataccaaatggctgaaagcacctaaaaaatgttcaacat
ccttagtcatcagggatatgaaaatctaaacaaccttgagattccatctc
acaccaatcagaatgactacaataaaaataaaaaaaaaaaaaaactcagg
tgtttggaagctgattatgggatggatcctccaatcagcttccaaacttg
gggatccatcccataatcagcttgcaaatgctgacacctttgtataccct
atcattatttttttgaa

gaattctcttaaattgaaaatatcttgggaggagtgcatttcaaggatat
ggccgaaacccggaatgaggaaggttccctgaaatcaatggggtgacctt
agctgagagtcatagcagaagggatatggaacctgaaggggcccctttct
gtagctgggaaggaaccacaatggagtgacagggacatcaacctatcaat
ataactttcaacaccatatttatccaatttatcctgcctacaagaatttc
agggatgggtgatggagcagagactgagggaacatccaagcaataactgg
cctaacttgagacacctctcatgggcaagtgccaatccctgacactatta
atgatcctttgttatgcttgaagaaaagagaaaagtgtaactgacctctg
agagactgcacccagcagctgacaaaaacagaaggaaagaaccacagcca
aacgttagatggagatcaggtactcttatgaaatgcttagggggaaggat
tgtgggtcctgaagaagatatgaactccacagaagaccaagagaatcaac
taacttggatccttgggggctctcagaataatatgaaccaccaaccaaag
agcatacatgggctcaatctagacgtccagcagatgggtggcttggtctc
catatggtctcccaacaacttgaatggttgctgtccataaagctgttgcc
tctctgtggaatatgattccctaactgagttgtctggcctcaatgggaga
ggatgtgactagccatgaggagatttgctttgcctgggtatagatttgct
atacccaggtggggcctccaccctctcagagaatgggaatgggtaaaagg
aagagaatgtgtgtgtgtgtgtcgggggcgggggcgaataggagcagagg
tcagtggggtttgtggttatatggagacattggaaggagaaaaggaggag
aaacatatatatatgattccaaattttttaaagtagaataaaaaagagga
agagagagagctctgttgattcactggtcagacttagcacttacattctg
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111597902_111598971
seq2: B6Ng01-087F09.g_69_1121

seq1  GAATTCTCTTAAATTGAAAATATCTTGGGAGGAGTGCATTTCAAGGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAAATTGAAAATATCTTGGGAGGAGTGCATTTCAAGGATAT  50

seq1  GGCCGAAACCCGGAATGAGGAAGGTTCCCTGAAATCAATGGGGTGACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAAACCCGGAATGAGGAAGGTTCCCTGAAATCAATGGGGTGACCTT  100

seq1  AGCTGAGAGTCATAGCAGAAGGGATATGGAACCTGAAGGGGCCCCTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAGTCATAGCAGAAGGGATATGGAACCTGAAGGGGCCCCTTTCT  150

seq1  GTAGCTGGGAAGGAACCACAATGGAGTGACAGGGACATCAACCTATCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGGGAAGGAACCACAATGGAGTGACAGGGACATCAACCTATCAAT  200

seq1  ATAACTTTCAACACCATATTTATCCAATTTATCCTGCCTACAAGAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTCAACACCATATTTATCCAATTTATCCTGCCTACAAGAATTTC  250

seq1  AGGGATGGGTGATGGAGCAGAGACTGAGGGAACATCCAAGCAATAACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGGTGATGGAGCAGAGACTGAGGGAACATCCAAGCAATAACTGG  300

seq1  CCTAACTTGAGACACCTCTCATGGGCAAGTGCCAATCCCTGACACTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTGAGACACCTCTCATGGGCAAGTGCCAATCCCTGACACTATTA  350

seq1  ATGATCCTTTGTTATGCTTGAAGAAAAGAGAAAAGTGTAACTGACCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCTTTGTTATGCTTGAAGAAAAGAGAAAAGTGTAACTGACCTCTG  400

seq1  AGAGACTGCACCCAGCAGCTGACAAAAACAGAAGGAAAGAACCACAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGCACCCAGCAGCTGACAAAAACAGAAGGAAAGAACCACAGCCA  450

seq1  AACGTTAGATGGAGATCAGGTACTCTTATGAAATGCTTAGGGGGAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTAGATGGAGATCAGGTACTCTTATGAAATGCTTAGGGGGAAGGAT  500

seq1  TGTGGGTCCTGAAGAAGATATGAACTCCACAGAAGACCAAGAGAATCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCCTGAAGAAGATATGAACTCCACAGAAGACCAAGAGAATCAAC  550

seq1  TAACTTGGATCCTTGGGGGCTCTCAGAATAATATGAACCACCAACCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGGATCCTTGGGGGCTCTCAGAATAATATGAACCACCAACCAAAG  600

seq1  AGCATACATGGGCTCAATCTAGACGTCCAGCAGATGGGTGGCTTGGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACATGGGCTCAATCTAGACGTCCAGCAGATGGGTGGCTTGGTCTC  650

seq1  CATATGGTCTCCCAACAACTTGAATGGTTGCTGTCCATAAAGCTGTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGTCTCCCAACAACTTGAATGGTTGCTGTCCATAAAGCTGTTGCC  700

seq1  TCTCTGTGGAATATGATTCCCTAACTGAGTTGTCTGGCCTCAATGGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGGAATATGATTCCCTAACTGAGTTGTCTGGCCTCAATGGGAGA  750

seq1  GGATGTGACTAGCCATGAGGAGATTTGCTTTGCCTGGGTATAGATTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGACTAGCCATGAGGAGATTTGCTTTGCCTGGGTATAGATTTGCT  800

seq1  ATACCCAGGTGGGGCCTCCACCCTCTCAGAGAATGGGAATGGGTAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGGTGGGGCCTCCACCCTCTCAGAGAATGGGAATGGGTAAAAGG  850

seq1  AAGAGAATGTGTGTGTGTGTGTCGGGGGCGGGGGCGAATAGGAGCAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATGTGTGTGTGTGTGTCGGGGGCGGGGGCGAATAGGAGCAGAGG  900

seq1  TTCAGTGGGGTTTGTGGTTATATGGAAGACATTGGAAGGAGAAAAGGGAA  950
       |||||||||||||||||||||||| |||||||||||||||||||||  |
seq2  -TCAGTGGGGTTTGTGGTTATATGG-AGACATTGGAAGGAGAAAAGG--A  946

seq1  GGAAGAAACATAATTATATTATGATTCCAAAATTTTTTTAAAAGTAGAAT  1000
      || |||||||||  |||| ||||||||||||   ||||| ||||||||||
seq2  GG-AGAAACATA--TATA-TATGATTCCAAA---TTTTTTAAAGTAGAAT  989

seq1  AAAAAAGAGGAAAGAAGAGA-AGAGCTCTGTTGATTCACTTGTTCAGAAC  1049
      |||||||||    ||||||| |||||||||||||||||| || |||| ||
seq2  AAAAAAGAG----GAAGAGAGAGAGCTCTGTTGATTCAC-TGGTCAG-AC  1033

seq1  TTAGCACTTAACATTCTGTTT  1070
      ||||||||| |||||||||||
seq2  TTAGCACTT-ACATTCTGTTT  1053


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