BAC Information

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BAC

Clone NameB6Ng01-087L02
Chromosome14 (Build37)
Map Location 112,566,474 - 112,717,222
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk5, LOC100043501
Downstream geneEG223186, LOC100043509, Tpm3-rs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087L02.bB6Ng01-087L02.g
ACCDH900746DH900747
length1,1741,105
definitionDH900746|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L02, 5' end.DH900747|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,716,050 - 112,717,222)(112,566,474 - 112,567,573)
sequence
gaattctgtttgctaatttttcttagttaattcaacaacatatgacatta
cattaaagaataattagtttctatttgaagattacatagatgcttcccaa
acatacagttaaatggaattcagttttcttgcttttttctttgttttttc
ataacttttattattaatcagtttaataatgaggtatcatcatatctcac
acaatccaaccacagtgaatctcttgcttcctgtcaaaatcgtagcctct
tttctattaatcattaatgttacgaaaacacacatatatatgtgtgtatt
ctcatgcctatacacacgtaggaaagaagaggatatataaatagtcatct
acagaaatgaataaatacataaatacaacctgctgagtcagtttctaatt
cagtttcacagtaataaaccatgagaaacaaagaaattctataattccac
actcaggcaagtattaggcaatgctttatttatattaatttgattataac
attttagaaaataattttgtatgtattaattcaactagctcaatttatat
gaaatcattacaatattatttataattgctgcaggcattttcagtgaatt
tctttactttgtttctctagttaaatatgtatttgcatatataagtagct
tctgtttatatccaaatactttcaatttgccacaaaattcccaatgaacc
aaaactgtttataaaagttaggaatgtatatattccaatatagttgaata
gatttttacttaaattttcagaattaaaattataggattacacataggat
gttaatgtaaaattgttgataagaaactgaatcctctattttcattcact
ccttattacattaatgtcaaacagattggctttgatattaaaatgtaagc
ataatgtcaaccacagtctaagaaggataagtatcatggcaaacaataag
cttttgagatattgatgttatcattttaatacatgatgtgtcttgaagca
atcagcttataaatagagtaggagcaatttaaaccatcttgtcttcatgc
ttccaagatgttcttcctcatatgacgttcctctttatcacttactactt
tagtttgccagatctagatttcagagcatttgaatatatattatatttat
aagatatatataatttttaataaa
gaattcagagtaggtaagttggtgaacaggagaaggagtgagaggggaag
atgtttttggaggggaaaccaggaaaggggataatatttgaaatgtaaat
agtgaaaatagcgaataaaaaagaaaacttataacacaaagcagcttttt
acatttttcttaaaattattcagggagttgtcacagaatctcagacacta
tcttaaacactgggtgtgttgagtaatttttgtaacattgatgcacaccc
gagtcatttaggaagagagaaccttaattgagcttatacctcaatatgag
tgggtggtacgcaagcttacaggtatattttctttgttaattattgatgt
gggaaagtcctggaccacagtaggtatttccatccctagatgggttatat
aaaatgtagttctatgagtcatggagatcaagtcaagaaatgacatatct
ccatgtacttctctctactccaacttgagttcttgccatgacttacctca
gcgatttattttctggaacatgtgagccaaattaactctttcttcccaag
ttggtattgatcattgcataagagattaaatcttttactctctagacttg
gggtacaacggaagcaatatgagttactagtgggtattcctgtttcatac
atataaacatatccagtcaatagaaataatgacaaaaacatttgcgttca
gatgaaacagagtaggctaaacatgaaagaggtttgtacaggttggatta
gagataaaccacggaagtgcacatcaaagaaaagagattatacaaaaatt
atcctagtgtatacttatttagacattatatcttgtaagatggctgacaa
ctgaacagttctttagaaagatattaattttaaatagggtcctgagaaaa
aacattgcttgtgaacaatgacttaaaatgtaggaaaataattaattaat
gattgctagaatgctgaggagagggaaatagctatctgtagaaaatatag
gatgattagaattaaattagagtaactcttaaagacatggacacttatta
gtcccgttaatcagtactcatcacataatgctaatcttcagaaggaacct
ctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112716050_112717222
seq2: B6Ng01-087L02.b_46_1219 (reverse)

seq1  TTTAT--AAATATATATATAT-TTATAATATAT-ATATAT-TTAAAATGC  45
      |||||  |||  ||||||||| |||||| |||| |||||| || ||||||
seq2  TTTATTAAAAATTATATATATCTTATAA-ATATAATATATATTCAAATGC  49

seq1  TCTGAATTCTAGATCTTGGCAAAACTAAAGTAGTAAGTGATAAAGA-GAA  94
      |||||| |||||||| |||| ||||||||||||||||||||||||| |||
seq2  TCTGAAATCTAGATC-TGGC-AAACTAAAGTAGTAAGTGATAAAGAGGAA  97

seq1  CGTCATATGAGGAAG-ACATCTTGGAAAGCATGAAGACAAGATGGTTTTA  143
      ||||||||||||||| ||||||||| |||||||||||||||||||||| |
seq2  CGTCATATGAGGAAGAACATCTTGG-AAGCATGAAGACAAGATGGTTTAA  146

seq1  ATTGCTCCTACTCTTATTTATAAGCTGATTGCTTCAAGACACATCATGTA  193
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCCTACTC-TATTTATAAGCTGATTGCTTCAAGACACATCATGTA  195

seq1  TTAAAATGATAACATCAATATCTCAAAAGCTTATTGTTTTGCCATGATAC  243
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTAAAATGATAACATCAATATCTCAAAAGCTTATTG-TTTGCCATGATAC  244

seq1  TTATCCTTCTTAGACTGTGGTTGACATTATGCTTACATTTTAATATCAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTCTTAGACTGTGGTTGACATTATGCTTACATTTTAATATCAAA  294

seq1  GCCAATCTGTTTGACATTAATGTAATAAGGAGTGAATGAAAATAGAGGAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCTGTTTGACATTAATGTAATAAGGAGTGAATGAAAATAGAGGAT  344

seq1  TCAGTTTCTTATCAACAATTTTACATTAACATCCTATGTGTAATCCTATA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCTTATCAACAATTTTACATTAACATCCTATGTGTAATCCTATA  394

seq1  ATTTTAATTCTGAAAATTTAAGTAAAAATCTATTCAACTATATTGGAATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTCTGAAAATTTAAGTAAAAATCTATTCAACTATATTGGAATA  444

seq1  TATACATTCCTAACTTTTATAAACAGTTTTGGTTCATTGGGAATTTTGTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTCCTAACTTTTATAAACAGTTTTGGTTCATTGGGAATTTTGTG  494

seq1  GCAAATTGAAAGTATTTGGATATAAACAGAAGCTACTTATATATGCAAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTGAAAGTATTTGGATATAAACAGAAGCTACTTATATATGCAAAT  544

seq1  ACATATTTAACTAGAGAAACAAAGTAAAGAAATTCACTGAAAATGCCTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTAACTAGAGAAACAAAGTAAAGAAATTCACTGAAAATGCCTGC  594

seq1  AGCAATTATAAATAATATTGTAATGATTTCATATAAATTGAGCTAGTTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTATAAATAATATTGTAATGATTTCATATAAATTGAGCTAGTTGA  644

seq1  ATTAATACATACAAAATTATTTTCTAAAATGTTATAATCAAATTAATATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATACATACAAAATTATTTTCTAAAATGTTATAATCAAATTAATATA  694

seq1  AATAAAGCATTGCCTAATACTTGCCTGAGTGTGGAATTATAGAATTTCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCATTGCCTAATACTTGCCTGAGTGTGGAATTATAGAATTTCTT  744

seq1  TGTTTCTCATGGTTTATTACTGTGAAACTGAATTAGAAACTGACTCAGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCATGGTTTATTACTGTGAAACTGAATTAGAAACTGACTCAGCA  794

seq1  GGTTGTATTTATGTATTTATTCATTTCTGTAGATGACTATTTATATATCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTATTTATGTATTTATTCATTTCTGTAGATGACTATTTATATATCC  844

seq1  TCTTCTTTCCTACGTGTGTATAGGCATGAGAATACACACATATATATGTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCCTACGTGTGTATAGGCATGAGAATACACACATATATATGTG  894

seq1  TGTTTTCGTAACATTAATGATTAATAGAAAAGAGGCTACGATTTTGACAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCGTAACATTAATGATTAATAGAAAAGAGGCTACGATTTTGACAG  944

seq1  GAAGCAAGAGATTCACTGTGGTTGGATTGTGTGAGATATGATGATACCTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGAGATTCACTGTGGTTGGATTGTGTGAGATATGATGATACCTC  994

seq1  ATTATTAAACTGATTAATAATAAAAGTTATGAAAAAACAAAGAAAAAAGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAACTGATTAATAATAAAAGTTATGAAAAAACAAAGAAAAAAGC  1044

seq1  AAGAAAACTGAATTCCATTTAACTGTATGTTTGGGAAGCATCTATGTAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTGAATTCCATTTAACTGTATGTTTGGGAAGCATCTATGTAAT  1094

seq1  CTTCAAATAGAAACTAATTATTCTTTAATGTAATGTCATATGTTGTTGAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATAGAAACTAATTATTCTTTAATGTAATGTCATATGTTGTTGAA  1144

seq1  TTAACTAAGAAAAATTAGCAAACAGAATTC  1173
      ||||||||||||||||||||||||||||||
seq2  TTAACTAAGAAAAATTAGCAAACAGAATTC  1174

seq1: chr14_112566474_112567573
seq2: B6Ng01-087L02.g_68_1172

seq1  GAATTCAGAGTAGGTAAGTTGGTGAACAGGAGAAGGAGTGAGAGGGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTAGGTAAGTTGGTGAACAGGAGAAGGAGTGAGAGGGGAAG  50

seq1  ATGTTTTTGGAGGGGAAACCAGGAAAGGGGATAATATTTGAAATGTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTGGAGGGGAAACCAGGAAAGGGGATAATATTTGAAATGTAAAT  100

seq1  AGTGAAAATAGCGAATAAAAAAGAAAACTTATAACACAAAGCAGCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAATAGCGAATAAAAAAGAAAACTTATAACACAAAGCAGCTTTTT  150

seq1  ACATTTTTCTTAAAATTATTCAGGGAGTTGTCACAGAATCTCAGACACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCTTAAAATTATTCAGGGAGTTGTCACAGAATCTCAGACACTA  200

seq1  TCTTAAACACTGGGTGTGTTGAGTAATTTTTGTAACATTGATGCACACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACACTGGGTGTGTTGAGTAATTTTTGTAACATTGATGCACACCC  250

seq1  GAGTCATTTAGGAAGAGAGAACCTTAATTGAGCTTATACCTCAATATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATTTAGGAAGAGAGAACCTTAATTGAGCTTATACCTCAATATGAG  300

seq1  TGGGTGGTACGCAAGCTTACAGGTATATTTTCTTTGTTAATTATTGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTACGCAAGCTTACAGGTATATTTTCTTTGTTAATTATTGATGT  350

seq1  GGGAAAGTCCTGGACCACAGTAGGTATTTCCATCCCTAGATGGGTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTCCTGGACCACAGTAGGTATTTCCATCCCTAGATGGGTTATAT  400

seq1  AAAATGTAGTTCTATGAGTCATGGAGATCAAGTCAAGAAATGACATATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAGTTCTATGAGTCATGGAGATCAAGTCAAGAAATGACATATCT  450

seq1  CCATGTACTTCTCTCTACTCCAACTTGAGTTCTTGCCATGACTTACCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTACTTCTCTCTACTCCAACTTGAGTTCTTGCCATGACTTACCTCA  500

seq1  GCGATTTATTTTCTGGAACATGTGAGCCAAATTAACTCTTTCTTCCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTTATTTTCTGGAACATGTGAGCCAAATTAACTCTTTCTTCCCAAG  550

seq1  TTGGTATTGATCATTGCATAAGAGATTAAATCTTTTACTCTCTAGACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATTGATCATTGCATAAGAGATTAAATCTTTTACTCTCTAGACTTG  600

seq1  GGGTACAACGGAAGCAATATGAGTTACTAGTGGGTATTCCTG-TTCATAC  649
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGTACAACGGAAGCAATATGAGTTACTAGTGGGTATTCCTGTTTCATAC  650

seq1  ATATAAACATATCCAGTCAATAGAAATAATGACAAAAACA-TTGCGTTCA  698
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATAAACATATCCAGTCAATAGAAATAATGACAAAAACATTTGCGTTCA  700

seq1  GATGAAACAGAGTAGGCTAAACATGAAAGAGGTTTGTACAGGTTGGATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAACAGAGTAGGCTAAACATGAAAGAGGTTTGTACAGGTTGGATTA  750

seq1  GAGAT-AACCACGGAAGTGCACATCAAAGAAAAGAGATTATACAAAAATA  797
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGATAAACCACGGAAGTGCACATCAAAGAAAAGAGATTATACAAAAATT  800

seq1  ATCCTAGTGTATACTTATTTAGACATTATATCTTGTAAGATGGCTGACAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGTGTATACTTATTTAGACATTATATCTTGTAAGATGGCTGACAA  850

seq1  CTGAACAGTTCTTTAGAAAGATATAAATTTTAAATAGGGTCCTGAGGAAA  897
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  CTGAACAGTTCTTTAGAAAGATATTAATTTTAAATAGGGTCCTGAGAAAA  900

seq1  TACA-TGCTTGTGAACAATGACTTAAAATGTAGGAAAATAATTA--TTAT  944
       ||| |||||||||||||||||||||||||||||||||||||||  | ||
seq2  AACATTGCTTGTGAACAATGACTTAAAATGTAGGAAAATAATTAATTAAT  950

seq1  GAATGCTAGAATGCTGAGGAGAGGGAAATAGCTATCTGTTAGAAATATAG  994
      || ||||||||||||||||||||||||||||||||||||   ||||||||
seq2  GATTGCTAGAATGCTGAGGAGAGGGAAATAGCTATCTGTAGAAAATATAG  1000

seq1  GATGATTAGATTTAAATTAGAGTAACTCTTAAAGACATGGAACACTTATT  1044
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  GATGATTAGAATTAAATTAGAGTAACTCTTAAAGACATGG-ACACTTATT  1049

seq1  AGTTCCCGTTAATCAGTACTCATCACATAATGCTAATTCTTCAGA--GGA  1092
      || ||||||||||||||||||||||||||||||||| ||||||||  | |
seq2  AG-TCCCGTTAATCAGTACTCATCACATAATGCTAA-TCTTCAGAAGGAA  1097

seq1  CCTCTAAA  1100
      ||||||||
seq2  CCTCTAAA  1105