BAC Information

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BAC

Clone NameB6Ng01-087N24
Chromosome14 (Build37)
Map Location 64,477,260 - 64,532,012
singlet/doubletdoublet
Overlap geneLOC668306, 2610028A01Rik
Upstream geneWdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6
Downstream geneSox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra, Kif13b, Hmbox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N24.bB6Ng01-087N24.g
ACCDH900880DH900881
length1,0731,119
definitionDH900880|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N24, 5' end.DH900881|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,530,939 - 64,532,012)(64,477,260 - 64,478,380)
sequence
gaattctgtctggtgcagtgtacaaattaccatcgtaacccttagcaata
tattgacctcagttaaatgacctgagtatttctctcctgttacctacttt
ccaggggaactgtcacacctcctgtgggattagctggacacatcaatggc
ctacctggactgaactgtttttagtggactgtacagcaagagattctaaa
gcccaagaaagccacaaggaggacagctctttggacagcaaatgaagttc
cctggcctgagatcaagggttggagaggcagcagtccaaagcctcagcta
gaagtaggcactgagcctctggggcacctctgtggttttatccatcccct
ttgcggtttcaatgttcttaaaagagtgcaatgacttacaaagaattact
tttgtactcacaaagcttgttcaagcataaaatcctgtactttttttgtg
tgacatccatcacacaaatttagaattgggctaaacacataaagcctcag
tagtagccagcctaaggaatttgcttaggaaactcagtcattcaacataa
gggagtatatgggaatcaaaacaacctgaaagcctcttatggaagataag
ttttgatgtcaagcaatgaaaaatgaaaactcagggctaccattaataga
atggaaattgtgctatgacttaacaggcatgatgtgtgtacatgtgtgca
aaggggtacagaacccagtcacatgtaagatgcccactgtgcagagattt
gaagaaagagctccctaaaacagggactgagaaattactgctgtgggttc
tcatgttcacctaagtagatttattttcacatttctaagaagttgggcaa
gagaaccaaatgaagactatatcatagcatgtgaaactacatgaatttca
aataactataaagcccaaatttcctcagtaaaatatttgtggaaatattt
tctctttagttacacaagtacttgtacaggtgctgggtgaacatctgcct
aatggatatattttaaaaatacatctgcttttaaaaccacagtactgaca
gcttttggaaataccagctgttt
gaattccactcgggaattccactcagcacagtctttcttcctgggaacag
cacaccatggctagctctaggaaaggatacggcgaccccttgctcagtca
ggttcaggctacacatggctgaattccgagccccattagccaatattaat
aatgaaagaggaatgacggtagaaggcacaaatgaatcatgtcaacctgc
tctcttcccggagaatcactgaggatttagcagagagcaggagtttcact
ctcacagctacagaatattttttacataatgcatgctaaacttcacactg
acagtctcaggaacttttccggttgccttttatttctacaatgattaaat
aatttactagcttactttttttttttttaatcaccaagactagtttctgc
tctaggcaaagccaggatagaaacaggttccatacagtgccctaataaac
ttgcttcagactccagggctgcgtggattgcatactttcctttctgtcct
ctccacacttgctcctccaattcttcttaaactggggttaatggacaata
gaagtttacgatgctccccaaagatgttttcaaacaaacaaaggacaaag
actttcaaaggtagctgatgctgtgatccagggacactcaccaggaattc
tactctttggtgaatctgccttgtcctgtaaagatcttttagagaggagt
gaggggtcatacatcaaagctggtgtcctcactgaatgtgaggaaatgct
cctgtgtgccctccttctttaaagctcaccgtttacctgggcttgggctt
ggttatctagaacaggaaccctggcccagggaaagggaaaggatttgggg
caaagcccagatatcctaagtaagtgatttggtcagacccagccccattg
ccaccacggtcacatttactgccttttctttcttgttaataatttggtgg
tcaagtacacaatcattcttggctgggggctatcaatgtcctcatcttac
agtaggtaaacgtgacagtcatgctgattctcagtcctcagccacagccc
tattttcaccagccactgcatctatagaaggagttgccctgaatgcatcg
ggtctacttgtatcttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_64530939_64532012
seq2: B6Ng01-087N24.b_44_1116 (reverse)

seq1  AAACAGCTGGTATTTCCAAAAGCTGTCAGTACTGTGGTTTTAAAAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGGTATTTCCAAAAGCTGTCAGTACTGTGGTTTTAAAAGCAGA  50

seq1  TTGTA-TTTTAAAATATATCCATTAGGCAGATGTTCACCCAGCACCTGTA  99
       |||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  -TGTATTTTTAAAATATATCCATTAGGCAGATGTTCACCCAGCACCTGT-  98

seq1  ACAAGTACTTGTGTAACTAAAGAGAAAATATTTCCACAAATATTTTACTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTACTTGTGTAACTAAAGAGAAAATATTTCCACAAATATTTTACTG  148

seq1  AGGAAATTTGGGCTTTATAGTTATTTGAAATTCATGTAGTTTCACATGCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTTGGGCTTTATAGTTATTTGAAATTCATGTAGTTTCACATGCT  198

seq1  ATGATATAGTCTTCATTTGGTTCTCTTGCCCAACTTCTTAGAAATGTGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATAGTCTTCATTTGGTTCTCTTGCCCAACTTCTTAGAAATGTGAA  248

seq1  AATAAATCTACTTAGGTGAACATGAGAACCCACAGCAGTAATTTCTCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTACTTAGGTGAACATGAGAACCCACAGCAGTAATTTCTCAGT  298

seq1  CCCTGTTTTAGGGAGCTCCTTCTTCAAATCTCTGCACAGTGGGCATCTTA  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCTGTTTTAGGGAGCTCTTTCTTCAAATCTCTGCACAGTGGGCATCTTA  348

seq1  CATGTGACTGGGTTCTGTACCCCTTTGCACACATGTACACACATCATGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGACTGGGTTCTGTACCCCTTTGCACACATGTACACACATCATGCC  398

seq1  TGTTAAGTCATAGCACAATTTCCATTCTATTAATGGTAGCCCTGAGTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTCATAGCACAATTTCCATTCTATTAATGGTAGCCCTGAGTTTT  448

seq1  CATTTTTCATTGCTTGACATCAAAACTTATCTTCCATAAGAGGCTTTCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCATTGCTTGACATCAAAACTTATCTTCCATAAGAGGCTTTCAG  498

seq1  GTTGTTTTGATTCCCATATACTCCCTTATGTTGAATGACTGAGTTTCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGATTCCCATATACTCCCTTATGTTGAATGACTGAGTTTCCTA  548

seq1  AGCAAATTCCTTAGGCTGGCTACTACTGAGGCTTTATGTGTTTAGCCCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTCCTTAGGCTGGCTACTACTGAGGCTTTATGTGTTTAGCCCAA  598

seq1  TTCTAAATTTGTGTGATGGATGTCACACAAAAAAAGTACAGGATTTTATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATTTGTGTGATGGATGTCACACAAAAAAAGTACAGGATTTTATG  648

seq1  CTTGAACAAGCTTTGTGAGTACAAAAGTAATTCTTTGTAAGTCATTGCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACAAGCTTTGTGAGTACAAAAGTAATTCTTTGTAAGTCATTGCAC  698

seq1  TCTTTTAAGAACATTGAAACCGCAAAGGGGATGGATAAAACCACAGAGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAGAACATTGAAACCGCAAAGGGGATGGATAAAACCACAGAGGT  748

seq1  GCCCCAGAGGCTCAGTGCCTACTTCTAGCTGAGGCTTTGGACTGCTGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAGGCTCAGTGCCTACTTCTAGCTGAGGCTTTGGACTGCTGCCT  798

seq1  CTCCAACCCTTGATCTCAGGCCAGGGAACTTCATTTGCTGTCCAAAGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCCTTGATCTCAGGCCAGGGAACTTCATTTGCTGTCCAAAGAGC  848

seq1  TGTCCTCCTTGTGGCTTTCTTGGGCTTTAGAATCTCTTGCTGTACAGTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCCTTGTGGCTTTCTTGGGCTTTAGAATCTCTTGCTGTACAGTCC  898

seq1  ACTAAAAACAGTTCAGTCCAGGTAGGCCATTGATGTGTCCAGCTAATCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAACAGTTCAGTCCAGGTAGGCCATTGATGTGTCCAGCTAATCCC  948

seq1  ACAGGAGGTGTGACAGTTCCCCTGGAAAGTAGGTAACAGGAGAGAAATAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGTGTGACAGTTCCCCTGGAAAGTAGGTAACAGGAGAGAAATAC  998

seq1  TCAGGTCATTTAACTGAGGTCAATATATTGCTAAGGGTTACGATGGTAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCATTTAACTGAGGTCAATATATTGCTAAGGGTTACGATGGTAAT  1048

seq1  TTGTACACTGCACCAGACAGAATTC  1074
      |||||||||||||||||||||||||
seq2  TTGTACACTGCACCAGACAGAATTC  1073

seq1: chr14_64477260_64478380
seq2: B6Ng01-087N24.g_69_1187

seq1  GAATTCCACTCGGGAATTCCACTCAGCACAGTCTTTCTTCCTGGGAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCGGGAATTCCACTCAGCACAGTCTTTCTTCCTGGGAACAG  50

seq1  CACACCATGGCTAGCTCTAGGAAAGGATACGGCGACCCCTTGCTCAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATGGCTAGCTCTAGGAAAGGATACGGCGACCCCTTGCTCAGTCA  100

seq1  GGTTCAGGCTACACATGGCTGAATTCCGAGCCCCATTAGCCAATATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGGCTACACATGGCTGAATTCCGAGCCCCATTAGCCAATATTAAT  150

seq1  AATGAAAGAGGAATGACGGTAGAAGGCACAAATGAATCATGTCAACCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGAGGAATGACGGTAGAAGGCACAAATGAATCATGTCAACCTGC  200

seq1  TCTCTTCCCGGAGAATCACTGAGGATTTAGCAGAGAGCAGGAGTTTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCCGGAGAATCACTGAGGATTTAGCAGAGAGCAGGAGTTTCACT  250

seq1  CTCACAGCTACAGAATATTTTTTACATAATGCATGCTAAACTTCACACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCTACAGAATATTTTTTACATAATGCATGCTAAACTTCACACTG  300

seq1  ACAGTCTCAGGAACTTTTCCGGTTGCCTTTTATTTCTACAATGATTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCAGGAACTTTTCCGGTTGCCTTTTATTTCTACAATGATTAAAT  350

seq1  AATTTACTAGCTTACTTTTTTTTTTTTTAATCACCAAGACTAGTTTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACTAGCTTACTTTTTTTTTTTTTAATCACCAAGACTAGTTTCTGC  400

seq1  TCTAGGCAAAGCCAGGATAGAAACAGGTTCCATACAGTGCCCTAATAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCAAAGCCAGGATAGAAACAGGTTCCATACAGTGCCCTAATAAAC  450

seq1  TTGCTTCAGACTCCAGGGCTGCGTGGATTGCATACTTTCCTTTCTGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGACTCCAGGGCTGCGTGGATTGCATACTTTCCTTTCTGTCCT  500

seq1  CTCCACACTTGCTCCTCCAATTCTTCTTAAACTGGGGTTAATGGACAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACACTTGCTCCTCCAATTCTTCTTAAACTGGGGTTAATGGACAATA  550

seq1  GAAGTTTACGATGCTCCCCAAAGATGTTTTCAAACAAACAAAGGACAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTACGATGCTCCCCAAAGATGTTTTCAAACAAACAAAGGACAAAG  600

seq1  ACTTTCAAAGGTAGCTGATGCTGTGATCCAGGGACACTCACCAGGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAAAGGTAGCTGATGCTGTGATCCAGGGACACTCACCAGGAATTC  650

seq1  TACTCTTTGGTGAATCTGCCTTGTCCTGTAAAGATCTTTTAGAGAGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTGGTGAATCTGCCTTGTCCTGTAAAGATCTTTTAGAGAGGAGT  700

seq1  GAGGGGTCATACATCAAAGCTGGTGTCCTCACTGAATGTGAGGAAATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTCATACATCAAAGCTGGTGTCCTCACTGAATGTGAGGAAATGCT  750

seq1  CCTGTGTGCCCTCCTTCTTTAAAGCTCACCGTTTACCTGGGCTTGGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGCCCTCCTTCTTTAAAGCTCACCGTTTACCTGGGCTTGGGCTT  800

seq1  GGTTATCTAGAACAGGAACCCTGGCCCAGGGAAAGGGAAAGGATTTGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTAGAACAGGAACCCTGGCCCAGGGAAAGGGAAAGGATTTGGGG  850

seq1  CAAAGCCCAGATATCCTAAGTAGGTGATTTGGTCAGACCCAGCCCCATTG  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAAAGCCCAGATATCCTAAGTAAGTGATTTGGTCAGACCCAGCCCCATTG  900

seq1  CCA-CACGGTCACATTTACTGCCTCTTCTTTCTTGTTAATAA-TTGGTGG  948
      ||| |||||||||||||||||||| ||||||||||||||||| |||||||
seq2  CCACCACGGTCACATTTACTGCCTTTTCTTTCTTGTTAATAATTTGGTGG  950

seq1  TCAAGTACACAATCATTCTTGGCTGGGGGCTATCAATGTCCTCATCTTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACACAATCATTCTTGGCTGGGGGCTATCAATGTCCTCATCTTAC  1000

seq1  AGGTAGGTAAACGTGACAGTCATGCCTGATTCTCAGGTCCTCCAGCACAG  1048
      | |||||||||||||||||||||| |||||||||| ||||||   |||||
seq2  A-GTAGGTAAACGTGACAGTCATG-CTGATTCTCA-GTCCTCAGCCACAG  1047

seq1  CCCTA-TTTCACCAGCACACTGCATC-ATAGAA-GAGTTGCCCTGAGTGC  1095
      ||||| |||||||||| ||||||||| |||||| |||||||||||| |||
seq2  CCCTATTTTCACCAGC-CACTGCATCTATAGAAGGAGTTGCCCTGAATGC  1096

seq1  ATCGGGGGTCTACATGGTATCTTGTT  1121
      |||  |||||||| | ||||||||||
seq2  ATC--GGGTCTAC-TTGTATCTTGTT  1119