BAC Information

Click to search

BAC

Clone NameB6Ng01-088C08
Chromosome14 (Build37)
Map Location 80,512,830 - 80,633,536
singlet/doubletdoublet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088C08.bB6Ng01-088C08.g
ACCDH901081DH901082
length274955
definitionDH901081|Mus musculus domesticus DNA, BAC clone: B6Ng01-088C08, 5' end.DH901082|Mus musculus domesticus DNA, BAC clone: B6Ng01-088C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,512,830 - 80,513,103)(80,632,575 - 80,633,536)
sequence
ctttggtgatgaacagaaatgtggaagtgtaagctgaataaatcctttcc
tccccaacttgcttcttagtcatgatgtttgtgcaggaatagaaaccctg
actaaatcaacacatgaatagtatttcctgaaaactgtgtttgaggaaag
ggatatagaaaatggtgcttttgtgttcacgaaaaataaactgtaagtgg
ggtacttaatggtatgattgagcctgtattactgctcttaaagaattgca
gtgtttatgtggagtgtgtgtgtg
gaattcagtaagccttgctagttccccacatgctggtcctcagacagagg
cccagggttgggggacaataattgattccaggcaaataggtccacagtgt
gttaacttggcgtacagacacaatctcaggaatcagaagaatggatgacc
tccatgcctatcagctactctcgagacggtaaaagtggaaagattgcaat
gcataatccagcttgtcagaaggattatagatgtgtgccaatgcttgatg
gtgtgtttgttgtcttctttatcaaagaaaaatcaagacgggttgaaagc
cacagatatagccccagtcactagaagcttgaagtaaaggttggtcccct
ttcaatatgtgcagacaacagagaattcggatagctcctcactcgatccc
atgggaagcataaagagaaaaagaaacaaaagcatgtggaacaaagccat
ggtatacctctccaatcccaaacctcccaagcccttttccatcagtgaca
gagaaaatccatctctttgccacctgctgggggctgtcatttgatgggca
ctcaccaagcagagagcagatggttacagaaagatgccttttgacacaca
gctgggtctccatctgtcccttgactgggatgtctcctttccttctggga
agaacaggtgcttacacaagaaggaaaactcaaaataagacgctacacaa
gcccaaagacaagtttgggagctggtagaacatgcctcttttgaccctat
ttttctcataaagaaatctaagtaaataaatgtaccagctctcagactct
gacacatcttttaaataatcccctttcttcatttgcttgatcccagccaa
aagagttgtttaaaactttcatgccatgaaactggattctttccatgttc
tgttgggttttgtttgtttgtttgtttgtttggtttggtttggtttggtt
ggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80512830_80513103
seq2: B6Ng01-088C08.b_52_325

seq1  CTTTGGTGATGAACAGAAATGTGGAAGTGTAAGCTGAATAAATCCTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGATGAACAGAAATGTGGAAGTGTAAGCTGAATAAATCCTTTCC  50

seq1  TCCCCAACTTGCTTCTTAGTCATGATGTTTGTGCAGGAATAGAAACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACTTGCTTCTTAGTCATGATGTTTGTGCAGGAATAGAAACCCTG  100

seq1  ACTAAATCAACACATGAATAGTATTTCCTGAAAACTGTGTTTGAGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATCAACACATGAATAGTATTTCCTGAAAACTGTGTTTGAGGAAAG  150

seq1  GGATATAGAAAATGGTGCTTTTGTGTTCACGAAAAATAAACTGTAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGAAAATGGTGCTTTTGTGTTCACGAAAAATAAACTGTAAGTGG  200

seq1  GGTACTTAATGGTATGATTGAGCCTGTATTACTGCTCTTAAAGAATTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTAATGGTATGATTGAGCCTGTATTACTGCTCTTAAAGAATTGCA  250

seq1  GTGTTTATGTGGAGTGTGTGTGTG  274
      ||||||||||||||||||||||||
seq2  GTGTTTATGTGGAGTGTGTGTGTG  274

seq1: chr14_80632575_80633536
seq2: B6Ng01-088C08.g_70_1023 (reverse)

seq1  AACCAAACCAAACCAAACCAAACCAAAACAAAACAAAACAAAACAAAACA  50
      |||| ||||||||||||||||||||||   |||||||   |||||||   
seq2  AACC-AACCAAACCAAACCAAACCAAA--CAAACAAA--CAAACAAA--C  43

seq1  AAAACCCAACAGAACATGGAAAGAATCCAGTTTCATGGCATGAAAGTTTT  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAACCCAACAGAACATGGAAAGAATCCAGTTTCATGGCATGAAAG-TTT  92

seq1  TAAACAACTCTTTTGGCTGGGATCAAGCAAATGAAGGAAGGGGATTATTT  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAACAACTCTTTTGGCTGGGATCAAGCAAATGAAGAAAGGGGATTATTT  142

seq1  AAAAGATGTGTCAGAGTCTGAGAGCTGGTACATTTATTTACTTAGATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTGTCAGAGTCTGAGAGCTGGTACATTTATTTACTTAGATTTC  192

seq1  TTTATGAGAAAAATAGGGTCAAAAGAGGCATGTTCTACCAGCTCCCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGAAAAATAGGGTCAAAAGAGGCATGTTCTACCAGCTCCCAAAC  242

seq1  TTGTCTTTGGGCTTGTGTAGCGTCTTATTTTGAGTTTTCCTTCTTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTGGGCTTGTGTAGCGTCTTATTTTGAGTTTTCCTTCTTGTGTA  292

seq1  AGCACCTGTTCTTCCCAGAAGGAAAGGAGACATCCCAGTCAAGGGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGTTCTTCCCAGAAGGAAAGGAGACATCCCAGTCAAGGGACAGA  342

seq1  TGGAGACCCAGCTGTGTGTCAAAAGGCATCTTTCTGTAACCATCTGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACCCAGCTGTGTGTCAAAAGGCATCTTTCTGTAACCATCTGCTCT  392

seq1  CTGCTTGGTGAGTGCCCATCAAATGACAGCCCCCAGCAGGTGGCAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGTGAGTGCCCATCAAATGACAGCCCCCAGCAGGTGGCAAAGAG  442

seq1  ATGGATTTTCTCTGTCACTGATGGAAAAGGGCTTGGGAGGTTTGGGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTTCTCTGTCACTGATGGAAAAGGGCTTGGGAGGTTTGGGATTG  492

seq1  GAGAGGTATACCATGGCTTTGTTCCACATGCTTTTGTTTCTTTTTCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTATACCATGGCTTTGTTCCACATGCTTTTGTTTCTTTTTCTCTT  542

seq1  TATGCTTCCCATGGGATCGAGTGAGGAGCTATCCGAATTCTCTGTTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCCCATGGGATCGAGTGAGGAGCTATCCGAATTCTCTGTTGTCT  592

seq1  GCACATATTGAAAGGGGACCAACCTTTACTTCAAGCTTCTAGTGACTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATTGAAAGGGGACCAACCTTTACTTCAAGCTTCTAGTGACTGGG  642

seq1  GCTATATCTGTGGCTTTCAACCCGTCTTGATTTTTCTTTGATAAAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATCTGTGGCTTTCAACCCGTCTTGATTTTTCTTTGATAAAGAAGA  692

seq1  CAACAAACACACCATCAAGCATTGGCACACATCTATAATCCTTCTGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACACACCATCAAGCATTGGCACACATCTATAATCCTTCTGACAA  742

seq1  GCTGGATTATGCATTGCAATCTTTCCACTTTTACCGTCTCGAGAGTAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTATGCATTGCAATCTTTCCACTTTTACCGTCTCGAGAGTAGCT  792

seq1  GATAGGCATGGAGGTCATCCATTCTTCTGATTCCTGAGATTGTGTCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCATGGAGGTCATCCATTCTTCTGATTCCTGAGATTGTGTCTGTA  842

seq1  CGCCAAGTTAACACACTGTGGACCTATTTGCCTGGAATCAATTATTGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAGTTAACACACTGTGGACCTATTTGCCTGGAATCAATTATTGTCC  892

seq1  CCCAACCCTGGGCCTCTGTCTGAGGACCAGCATGTGGGGAACTAGCAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCTGGGCCTCTGTCTGAGGACCAGCATGTGGGGAACTAGCAAGG  942

seq1  CTTACTGAATTC  962
      ||||||||||||
seq2  CTTACTGAATTC  954