BAC Information

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BAC

Clone NameB6Ng01-088F20
Chromosome14 (Build37)
Map Location 119,051,441 - 119,169,914
singlet/doubletdoublet
Overlap geneAbcc4
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088F20.bB6Ng01-088F20.g
ACCDH901235DH901236
length456590
definitionDH901235|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F20, 5' end.DH901236|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,169,453 - 119,169,914)(119,051,441 - 119,052,030)
sequence
tctcttctcctgatgttccacttctatttccctcctaagccacaggcttt
ttaactcacaggtgatagtgcatctatacaatagacaagctgttctctct
acactcagtacttgctagcacacaaagccctgtgtccttagcaccctgga
atgaagcctgcctggaattcaagagcttgggagctggggcggcaactgga
aggtcgggagttctctgtcatcctctgctacttaatgtgggctgttgaga
ctgcatctgcccccaccaggtcctggatgaagtctctctggtcgccttag
aacacgctgcaggccaggacacgccttgactgcctctaaccaagggcggt
ggcctggagctgagagtgaaggccaacctttcctccgtacgctgcttttc
ttaccttgcttttggtcagggtggtttttcttgtggtggtggagatggtt
ttggtt
gaattcccctgcacaggagccctgactgcctgaacggacacctcacacct
gactgtgtaattatggtgtgcaccacagtgggaatgaaaatgcctaagta
caagggggactaatggcatccaggaagattaaaaccgtgacaatttatgg
agaaacttcaatattctcctgtatggtactagattaagcctcagacagga
tggtggtggcagtgaaggcctaagacaccattaccagatccatgtcacag
atcaagagaacactgtctttgtcagagcctaaggatgttgggcctgcatg
agccacacaacgccaagattaataagactgctcaaaagaagaggtgccag
ggatacttcgtatttgctgagaaaatccatgggcattccagatacaccag
agactggtaaacaatgagtgacttcaatcaccggatgtcatccgaatgcc
accacacaactaaatcaaattagcaaagcgtctcagccattttgaacact
tcatgctcttgcagaggatatgggtcttcagacaacaagaaccatgtgca
tgcacgctcttgggagcctgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119169453_119169914
seq2: B6Ng01-088F20.b_47_508 (reverse)

seq1  AACCAAAACCATCTCCACCACCACAAGAAAAACCACCCTGACCAAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACCATCTCCACCACCACAAGAAAAACCACCCTGACCAAAAGCA  50

seq1  AGGTAAGAAAAGCAGCGTACGGAGGAAAGGTTGGCCTTCACTCTCAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGAAAAGCAGCGTACGGAGGAAAGGTTGGCCTTCACTCTCAGCTC  100

seq1  CAGGCCACCGCCCTTGGTTAGAGGCAGTCAAGGCGTGTCCTGGCCTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACCGCCCTTGGTTAGAGGCAGTCAAGGCGTGTCCTGGCCTGCAG  150

seq1  CGTGTTCTAAGGCGACCAGAGAGACTTCATCCAGGACCTGGTGGGGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCTAAGGCGACCAGAGAGACTTCATCCAGGACCTGGTGGGGGCAG  200

seq1  ATGCAGTCTCAACAGCCCACATTAAGTAGCAGAGGATGACAGAGAACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCTCAACAGCCCACATTAAGTAGCAGAGGATGACAGAGAACTCC  250

seq1  CGACCTTCCAGTTGCCGCCCCAGCTCCCAAGCTCTTGAATTCCAGGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTCCAGTTGCCGCCCCAGCTCCCAAGCTCTTGAATTCCAGGCAGG  300

seq1  CTTCATTCCAGGGTGCTAAGGACACAGGGCTTTGTGTGCTAGCAAGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCCAGGGTGCTAAGGACACAGGGCTTTGTGTGCTAGCAAGTACT  350

seq1  GAGTGTAGAGAGAACAGCTTGTCTATTGTATAGATGCACTATCACCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAGAGAGAACAGCTTGTCTATTGTATAGATGCACTATCACCTGTG  400

seq1  AGTTAAAAAGCCTGTGGCTTAGGAGGGAAATAGAAGTGGAACATCAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAGCCTGTGGCTTAGGAGGGAAATAGAAGTGGAACATCAGGAG  450

seq1  AAGAGAGAATTC  462
      ||||||||||||
seq2  AAGAGAGAATTC  462

seq1: chr14_119051441_119052030
seq2: B6Ng01-088F20.g_69_658

seq1  GAATTCCCCTGCACAGGAGCCCTGACTGCCTGAACGGACACCTCACACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGCACAGGAGCCCTGACTGCCTGAACGGACACCTCACACCT  50

seq1  GACTGTGTAATTATGGTGTGCACCACAGTGGGAATGAAAATGCCTAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTAATTATGGTGTGCACCACAGTGGGAATGAAAATGCCTAAGTA  100

seq1  CAAGGGGGACTAATGGCATCCAGGAAGATTAAAACCGTGACAATTTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGGACTAATGGCATCCAGGAAGATTAAAACCGTGACAATTTATGG  150

seq1  AGAAACTTCAATATTCTCCTGTATGGTACTAGATTAAGCCTCAGACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTCAATATTCTCCTGTATGGTACTAGATTAAGCCTCAGACAGGA  200

seq1  TGGTGGTGGCAGTGAAGGCCTAAGACACCATTACCAGATCCATGTCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGGCAGTGAAGGCCTAAGACACCATTACCAGATCCATGTCACAG  250

seq1  ATCAAGAGAACACTGTCTTTGTCAGAGCCTAAGGATGTTGGGCCTGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGAACACTGTCTTTGTCAGAGCCTAAGGATGTTGGGCCTGCATG  300

seq1  AGCCACACAACGCCAAGATTAATAAGACTGCTCAAAAGAAGAGGTGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACAACGCCAAGATTAATAAGACTGCTCAAAAGAAGAGGTGCCAG  350

seq1  GGATACTTCGTATTTGCTGAGAAAATCCATGGGCATTCCAGATACACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTCGTATTTGCTGAGAAAATCCATGGGCATTCCAGATACACCAG  400

seq1  AGACTGGTAAACAATGAGTGACTTCAATCACCGGATGTCATCCGAATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTAAACAATGAGTGACTTCAATCACCGGATGTCATCCGAATGCC  450

seq1  ACCACACAACTAAATCAAATTAGCAAAGCGTCTCAGCCATTTTGAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAACTAAATCAAATTAGCAAAGCGTCTCAGCCATTTTGAACACT  500

seq1  TCATGCTCTTGCAGAGGATATGGGTCTTCAGACAACAAGAACCATGTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCTTGCAGAGGATATGGGTCTTCAGACAACAAGAACCATGTGCA  550

seq1  TGCACGCTCTTGGGAGCCTGTGTGTGTGTGTGTGTGTGTG  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCTCTTGGGAGCCTGTGTGTGTGTGTGTGTGTGTG  590