BAC Information

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BAC

Clone NameB6Ng01-088H16
Chromosome14 (Build37)
Map Location 119,051,441 - 119,169,914
singlet/doubletdoublet
Overlap geneAbcc4
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088H16.bB6Ng01-088H16.g
ACCDH901318DH901319
length553588
definitionDH901318|Mus musculus domesticus DNA, BAC clone: B6Ng01-088H16, 5' end.DH901319|Mus musculus domesticus DNA, BAC clone: B6Ng01-088H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,169,357 - 119,169,914)(119,051,441 - 119,052,028)
sequence
tctcttctcctgatgttccacttctatttccctcctaagccacaggcttt
ttaactcacaggtgatagtgcatctatacaatagacaagctgttctctct
acactcagtacttgctagcacacaaagccctgtgtccttagcaccctgga
atgaagcctgcctggaattcaagagcttgggagctggggcggcaactgga
aggtcgggagttctctgtcatcctctgctacttaatgtgggctgttgaga
ctgcatctgcccccaccaggtcctggatgaagtctctctggtcgccttag
aacacgctgcaggccaggacacgccttgactgcctctaaccaagggcggt
ggcctggagctgagagtgaaggccaacctttcctccgtacgctgcttttc
ttaccttgcttttggtcagggtggtttttcttgtggtggtggagatggtt
ttggttttttaatttttagttttttaactgaaaaaagtaggttttttttt
cccaaactcctcccagactcttcccattcaaatccacgcctttttttttc
ttg
gaattcccctgcacaggagccctgactgcctgaacggacacctcacacct
gactgtgtaattatggtgtgcaccacagtgggaatgaaaatgcctaagta
caagggggactaatggcatccaggaagattaaaaccgtgacaatttatgg
agaaacttcaatattctcctgtatggtactagattaagcctcagacagga
tggtggtggcagtgaaggcctaagacaccattaccagatccatgtcacag
atcaagagaacactgtctttgtcagagcctaaggatgttgggcctgcatg
agccacacaacgccaagattaataagactgctcaaaagaagaggtgccag
ggatacttcgtatttgctgagaaaatccatgggcattccagatacaccag
agactggtaaacaatgagtgacttcaatcaccggatgtcatccgaatgcc
accacacaactaaatcaaattagcaaagcgtctcagccattttgaacact
tcatgctcttgcagaggatatgggtcttcagacaacaagaaccatgtgca
tgcacgctcttgggagcctgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119169357_119169914
seq2: B6Ng01-088H16.b_45_603 (reverse)

seq1  CAAGAAAAAAAAAGGCGTGGATTTGGATGGGAAGAGTCTGGGAGGAGTTT  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAGAAAAAAAAAGGCGTGGATTTGAATGGGAAGAGTCTGGGAGGAGTTT  50

seq1  GGG-AAAAAAAACCTACTTTTTTCAGTTAAAAAACTAAAAATTAAAAAAC  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAAAAACCTACTTTTTTCAGTTAAAAAACTAAAAATTAAAAAAC  100

seq1  CAAAACCATCTCCACCACCACAAGAAAAACCACCCTGACCAAAAGCAAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCATCTCCACCACCACAAGAAAAACCACCCTGACCAAAAGCAAGG  150

seq1  TAAGAAAAGCAGCGTACGGAGGAAAGGTTGGCCTTCACTCTCAGCTCCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGCAGCGTACGGAGGAAAGGTTGGCCTTCACTCTCAGCTCCAG  200

seq1  GCCACCGCCCTTGGTTAGAGGCAGTCAAGGCGTGTCCTGGCCTGCAGCGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCGCCCTTGGTTAGAGGCAGTCAAGGCGTGTCCTGGCCTGCAGCGT  250

seq1  GTTCTAAGGCGACCAGAGAGACTTCATCCAGGACCTGGTGGGGGCAGATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAGGCGACCAGAGAGACTTCATCCAGGACCTGGTGGGGGCAGATG  300

seq1  CAGTCTCAACAGCCCACATTAAGTAGCAGAGGATGACAGAGAACTCCCGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCAACAGCCCACATTAAGTAGCAGAGGATGACAGAGAACTCCCGA  350

seq1  CCTTCCAGTTGCCGCCCCAGCTCCCAAGCTCTTGAATTCCAGGCAGGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGTTGCCGCCCCAGCTCCCAAGCTCTTGAATTCCAGGCAGGCTT  400

seq1  CATTCCAGGGTGCTAAGGACACAGGGCTTTGTGTGCTAGCAAGTACTGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGGGTGCTAAGGACACAGGGCTTTGTGTGCTAGCAAGTACTGAG  450

seq1  TGTAGAGAGAACAGCTTGTCTATTGTATAGATGCACTATCACCTGTGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGAGAACAGCTTGTCTATTGTATAGATGCACTATCACCTGTGAGT  500

seq1  TAAAAAGCCTGTGGCTTAGGAGGGAAATAGAAGTGGAACATCAGGAGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCCTGTGGCTTAGGAGGGAAATAGAAGTGGAACATCAGGAGAAG  550

seq1  AGAGAATTC  558
      |||||||||
seq2  AGAGAATTC  559

seq1: chr14_119051441_119052028
seq2: B6Ng01-088H16.g_68_655

seq1  GAATTCCCCTGCACAGGAGCCCTGACTGCCTGAACGGACACCTCACACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGCACAGGAGCCCTGACTGCCTGAACGGACACCTCACACCT  50

seq1  GACTGTGTAATTATGGTGTGCACCACAGTGGGAATGAAAATGCCTAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTAATTATGGTGTGCACCACAGTGGGAATGAAAATGCCTAAGTA  100

seq1  CAAGGGGGACTAATGGCATCCAGGAAGATTAAAACCGTGACAATTTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGGACTAATGGCATCCAGGAAGATTAAAACCGTGACAATTTATGG  150

seq1  AGAAACTTCAATATTCTCCTGTATGGTACTAGATTAAGCCTCAGACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTCAATATTCTCCTGTATGGTACTAGATTAAGCCTCAGACAGGA  200

seq1  TGGTGGTGGCAGTGAAGGCCTAAGACACCATTACCAGATCCATGTCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGGCAGTGAAGGCCTAAGACACCATTACCAGATCCATGTCACAG  250

seq1  ATCAAGAGAACACTGTCTTTGTCAGAGCCTAAGGATGTTGGGCCTGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGAACACTGTCTTTGTCAGAGCCTAAGGATGTTGGGCCTGCATG  300

seq1  AGCCACACAACGCCAAGATTAATAAGACTGCTCAAAAGAAGAGGTGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACAACGCCAAGATTAATAAGACTGCTCAAAAGAAGAGGTGCCAG  350

seq1  GGATACTTCGTATTTGCTGAGAAAATCCATGGGCATTCCAGATACACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTCGTATTTGCTGAGAAAATCCATGGGCATTCCAGATACACCAG  400

seq1  AGACTGGTAAACAATGAGTGACTTCAATCACCGGATGTCATCCGAATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTAAACAATGAGTGACTTCAATCACCGGATGTCATCCGAATGCC  450

seq1  ACCACACAACTAAATCAAATTAGCAAAGCGTCTCAGCCATTTTGAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAACTAAATCAAATTAGCAAAGCGTCTCAGCCATTTTGAACACT  500

seq1  TCATGCTCTTGCAGAGGATATGGGTCTTCAGACAACAAGAACCATGTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCTTGCAGAGGATATGGGTCTTCAGACAACAAGAACCATGTGCA  550

seq1  TGCACGCTCTTGGGAGCCTGTGTGTGTGTGTGTGTGTG  588
      ||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCTCTTGGGAGCCTGTGTGTGTGTGTGTGTGTG  588