BAC Information

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BAC

Clone NameB6Ng01-088J11
Chromosome14 (Build37)
Map Location 7,804,339 - 8,027,246
singlet/doubletdoublet
Overlap geneEG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182
Upstream geneLOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100
Downstream geneLOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088J11.bB6Ng01-088J11.g
ACCDH901403DH901404
length1,1941,121
definitionDH901403|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J11, 5' end.DH901404|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,804,339 - 7,805,564)(8,026,107 - 8,027,246)
sequence
gaattcagtgttcatcctgtgttagggcatgacccaagaagcaaataatc
tgctgaattaaggattcaataatcatgtgccaacaggctatgtcatggac
taccaagccaagtgcatgccacatcctggctcattcaaacttggtcccct
tggtgctaattaaacttactatcctgggtagaggacagcagagccagggg
accaaatggagctagctgaccttcaagaccttaccagacaagcatgaagg
aatagaatacttctatgacaattttccactaaactgtgctacaggcatgg
gtccagtagatatctgtaatgactttcctcttgtatttaaggcagggatt
atcattcttggttcctgttgttatttgaattcccagaggacacaactagt
atttacaggagaaaggatttatcacacctcctcccccagaagattcctgt
gtgacaacaaggaaacactaggagcaaacttccctggtgatcactttgga
cctctatggactcaacactatcaggacctgcaaactgtgcttcacacaaa
tcctcagaccccatcaaaggtcccagagccccagtcctgaacaaaataca
cacacatctacattcacacacacagacacaattagaatgccaaataaatc
tgggaggtgccatcactcagaatataataaacaatatcagagtaaagctg
tgatagcctgcaggcattgcattcacacactgagagacagtaagtgtgag
caggtccttccagctgttgacagcaacaatcagattgcaagtaccccaag
gtcaagtacaaaagaagatgacagcaccttgtttatccaacaattaaaca
cctgtcaggctacttaattgaatgatgagaggtgacacactccattcatg
gaaggaattggggtaacagatggcagaatacagtcaatagggtactggtc
ataattcctacctgtagtttaaatcctcatacatgtaaacaatcagatcc
acacatttcttctctcatgctgatcttctatatgcaatttcagttctcta
cttatttatattgatatctgattgtgatgtgatttgggtgagtatttctt
agcgaacctgcagatagataacacaatgaattgcatacttgatgccaggc
agggaacatctgagttccagaagaacgcactgaggaagaaatgt
gaattctccagctttggaaggagaggttgccaaaggggatcccacgggtc
catgagaggctccaggagaggcaccccagaaaaggaccaagctgggcaga
actagttagcaggtagatcatggcagttgctaatgacatcatcagtaatg
ccttccttggagaatctcttgtatctaggatagaactagaatcctctgtg
ttgtcacctgtgttgtggtgacaggaactgcctgtggttcatcccttctg
tttgctctgggttcaccagcaggaatgttttccaggctgctcaggctatg
tctgaaagggaatggcgatgaaggagagaccagaccaaaaaagaaggaag
agggaatcctttctcatgaaaaaggaagaaggaaattgttctggagaagg
cacagtgagtcctgggcaaggttggggaaattcctggtagaggtaggctt
gagctgggccttccaggattaggtcttacaagctgaagccttggactttg
tcaatgtcagacaaagagtcaaaaatttctgatcattagtttaacagagc
caggaattgacaaacctgcagctacttttctgggagctatttaatttcat
tttgagtggcaaagaatgccaggagtgggcactatgagaataacagtgca
tcctttcatggaagggagttgaagcacttcatcttccagattactgtagg
taacttgagtctctgatgaaaagaacagagaaggatgctcccctggccat
gtcatgtggtgaggtctcagacactttggatttgaagacacatgattaat
tagggcttgatagtgctaagcactatgaactccaggatttccctgcatca
catctggtatgacctacaatgttccccatatctttatgtttgaggcagct
tatagatttcaggcaaggggcctgtaacaggagtgtgcatatgtctgaca
tggtggttaggagaggacatagcttagcaaacagctagaagatagctttg
ctgctctttaggtattcacccgtctttacttttcctctcatcatcttctt
cttgggactctgatggcctccctgccctggcatcaagtagcaaatcattg
tgttatcttatctggcagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_7804339_7805564
seq2: B6Ng01-088J11.b_44_1237

seq1  GAATTCAGTGTTCATCCTGTGTTAGGGCATGACCCAAGAAGCAAATAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTCATCCTGTGTTAGGGCATGACCCAAGAAGCAAATAATC  50

seq1  TGCTGAATTAAGGATTCAATAATCATGTGCCAACAGGCTATGTCATGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATTAAGGATTCAATAATCATGTGCCAACAGGCTATGTCATGGAC  100

seq1  TACCAAGCCAAGTGCATGCCACATCCTGGCTCATTCAAACTTGGTCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCCAAGTGCATGCCACATCCTGGCTCATTCAAACTTGGTCCCCT  150

seq1  TGGTGCTAATTAAACTTACTATCCTGGGTAGAGGACAGCAGAGCCAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTAATTAAACTTACTATCCTGGGTAGAGGACAGCAGAGCCAGGGG  200

seq1  ACCAAATGGAGCTAGCTGACCTTCAAGACCTTACCAGACAAGCATGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGGAGCTAGCTGACCTTCAAGACCTTACCAGACAAGCATGAAGG  250

seq1  AATAGAATACTTCTATGACAATTTTCCACTAAACTGTGCTACAGGCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATACTTCTATGACAATTTTCCACTAAACTGTGCTACAGGCATGG  300

seq1  GTCCAGTAGATATCTGTAATGACTTTCCTCTTGTATTTAAGGCAGGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTAGATATCTGTAATGACTTTCCTCTTGTATTTAAGGCAGGGATT  350

seq1  ATCATTCTTGGTTCCTGTTGTTATTTGAATTCCCAGAGGACACAACTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTTGGTTCCTGTTGTTATTTGAATTCCCAGAGGACACAACTAGT  400

seq1  ATTTACAGGAGAAAGGATTTATCACACCTCCTCCCCCAGAAGATTCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGGAGAAAGGATTTATCACACCTCCTCCCCCAGAAGATTCCTGT  450

seq1  GTGACAACAAGGAAACACTAGGAGCAAACTTCCCTGGTGATCACTTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAACAAGGAAACACTAGGAGCAAACTTCCCTGGTGATCACTTTGGA  500

seq1  CCTCTATGGACTCAACACTATCAGGACCTGCAAACTGTGCTTCACACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATGGACTCAACACTATCAGGACCTGCAAACTGTGCTTCACACAAA  550

seq1  TCCTCAGACCCCATCAAAGGTCCCAGAGCCCCAGTCCTGAACAAAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGACCCCATCAAAGGTCCCAGAGCCCCAGTCCTGAACAAAATACA  600

seq1  CACACATCTACATTCACACACACAGACACAATTAGAATGCCAAATAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATCTACATTCACACACACAGACACAATTAGAATGCCAAATAAATC  650

seq1  TGGGAGGTGCCATCACTCAGAATATAATAAACAATATCAGAGTAAAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTGCCATCACTCAGAATATAATAAACAATATCAGAGTAAAGCTG  700

seq1  TGATAGCCTGCAGGCATTGCATTCACACACTGAGAGACAGTAAGTGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCCTGCAGGCATTGCATTCACACACTGAGAGACAGTAAGTGTGAG  750

seq1  CAGGTCCTTCCAGCTGTTGACAGCAACAATCAGATTGCAAGTACCCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTTCCAGCTGTTGACAGCAACAATCAGATTGCAAGTACCCCAAG  800

seq1  GTCAAGTACAAAAGAAGATGACAGCACCTTGTTTATCCAACAATTAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTACAAAAGAAGATGACAGCACCTTGTTTATCCAACAATTAAACA  850

seq1  CCTGTCAGGGCTACTTAATTGAATGATGAGAGGTGACACACTCCATTCAT  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCA-GGCTACTTAATTGAATGATGAGAGGTGACACACTCCATTCAT  899

seq1  GGAAGGAAATTGGGGTAACAGATGGCAGAATACAGTCAATAGGGTACTGG  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGG-AATTGGGGTAACAGATGGCAGAATACAGTCAATAGGGTACTGG  948

seq1  TCATAATTCCTACCTGTAGTTTAAATCCTCATACATGTAAACATTCAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||  
seq2  TCATAATTCCTACCTGTAGTTTAAATCCTCATACATGTAAACAATCAG--  996

seq1  TTCCACACATTTCCTTCCTCTCATTGCTGATCTTCCTTATATGCAATTTC  1050
       ||||||||||||  | |||||| |||||||||||  |||||||||||||
seq2  ATCCACACATTTC--TTCTCTCA-TGCTGATCTTC--TATATGCAATTTC  1041

seq1  AGTTCTTCTACTTTATTTATATTTGATATCTGATTTGTGATGTTGGAATT  1100
      ||||| ||||| ||||||||| ||||||||||| |||||||||  ||  |
seq2  AGTTC-TCTAC-TTATTTATA-TTGATATCTGA-TTGTGATGT--GA--T  1083

seq1  TTGGGTTGAAGTATTTC-TAGCAGACCCTGCAGATAGATAAACACAAATG  1149
      ||||||   |||||||| |||| || ||||||||||||| ||||| ||||
seq2  TTGGGT--GAGTATTTCTTAGC-GAACCTGCAGATAGAT-AACAC-AATG  1128

seq1  AATTTGCATACTTGATGGCCCAGGGGCAGGGGAGACCATTCTGAGTCCCA  1199
      || ||||||||||||||  |||  ||||||| | |    ||||||| || 
seq2  AA-TTGCATACTTGATG--CCA--GGCAGGGAACA----TCTGAGTTCC-  1168

seq1  AGAAG-ACG-ACTGAGGAAGAGAAAATGT  1226
      ||||| ||| ||||||||||   ||||||
seq2  AGAAGAACGCACTGAGGAAG---AAATGT  1194

seq1: chr14_8026107_8027246
seq2: B6Ng01-088J11.g_69_1189 (reverse)

seq1  ACCCTG-CAGAT-AGATAAACACAAATGAATTTGCATACTTGATGGCCCA  48
      |||||| ||||| |||| ||||| |||| |||||| |||||||||  |||
seq2  ACCCTGCCAGATAAGAT-AACAC-AATG-ATTTGC-TACTTGATG--CCA  44

seq1  GGGGCAGGGGAGACCATTCAGAGTCCCAAGAAGAAGATTGATGGAGAGAA  98
       ||||| ||||| ||| |||||||||||||||||||| |||| ||||| |
seq2  -GGGCA-GGGAGGCCA-TCAGAGTCCCAAGAAGAAGA-TGAT-GAGAGGA  89

seq1  AAGGTAAAGACGGGGTGAATACCTAAAAGAGCAGCAAAGCTATCTTCTAG  148
      || |||||||| |||||||||||| |||||||||||||||||||||||||
seq2  AAAGTAAAGAC-GGGTGAATACCT-AAAGAGCAGCAAAGCTATCTTCTAG  137

seq1  CTGGTTTGCTAAGCTATGTTCCTCTTCCTAACCACCATTGTCAGACATAT  198
      || ||||||||||||||| ||||| |||||||||||| ||||||||||||
seq2  CT-GTTTGCTAAGCTATG-TCCTC-TCCTAACCACCA-TGTCAGACATAT  183

seq1  GCCACACTCCCTGTTACAGGCCCCCTTGCCCTGAAATCTATAAGCTGCCT  248
      | |||||| ||||||||||| ||||||| |||||||||||||||||||||
seq2  G-CACACT-CCTGTTACAGG-CCCCTTG-CCTGAAATCTATAAGCTGCCT  229

seq1  CAAACATAAAGATATGGGGAACATTGTAGGTCATACCAGATGTGATGCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATAAAGATATGGGGAACATTGTAGGTCATACCAGATGTGATGCAG  279

seq1  GGAAATCCTGGAGTTCATAGTGCTTAGCACTATCAAGCCCTAATTAATCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCTGGAGTTCATAGTGCTTAGCACTATCAAGCCCTAATTAATCA  329

seq1  TGTGTCTTCAAATCCAAAGTGTCTGAGACCTCACCACATGACATGGCCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTCAAATCCAAAGTGTCTGAGACCTCACCACATGACATGGCCAG  379

seq1  GGGAGCATCCTTCTCTGTTCTTTTCATCAGAGACTCAAGTTACCTACAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCATCCTTCTCTGTTCTTTTCATCAGAGACTCAAGTTACCTACAGT  429

seq1  AATCTGGAAGATGAAGTGCTTCAACTCCCTTCCATGAAAGGATGCACTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGAAGATGAAGTGCTTCAACTCCCTTCCATGAAAGGATGCACTGT  479

seq1  TATTCTCATAGTGCCCACTCCTGGCATTCTTTGCCACTCAAAATGAAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCATAGTGCCCACTCCTGGCATTCTTTGCCACTCAAAATGAAATT  529

seq1  AAATAGCTCCCAGAAAAGTAGCTGCAGGTTTGTCAATTCCTGGCTCTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTCCCAGAAAAGTAGCTGCAGGTTTGTCAATTCCTGGCTCTGTT  579

seq1  AAACTAATGATCAGAAATTTTTGACTCTTTGTCTGACATTGACAAAGTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATGATCAGAAATTTTTGACTCTTTGTCTGACATTGACAAAGTCC  629

seq1  AAGGCTTCAGCTTGTAAGACCTAATCCTGGAAGGCCCAGCTCAAGCCTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCAGCTTGTAAGACCTAATCCTGGAAGGCCCAGCTCAAGCCTAC  679

seq1  CTCTACCAGGAATTTCCCCAACCTTGCCCAGGACTCACTGTGCCTTCTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCAGGAATTTCCCCAACCTTGCCCAGGACTCACTGTGCCTTCTCC  729

seq1  AGAACAATTTCCTTCTTCCTTTTTCATGAGAAAGGATTCCCTCTTCCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATTTCCTTCTTCCTTTTTCATGAGAAAGGATTCCCTCTTCCTTC  779

seq1  TTTTTTGGTCTGGTCTCTCCTTCATCGCCATTCCCTTTCAGACATAGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTCTGGTCTCTCCTTCATCGCCATTCCCTTTCAGACATAGCCT  829

seq1  GAGCAGCCTGGAAAACATTCCTGCTGGTGAACCCAGAGCAAACAGAAGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCTGGAAAACATTCCTGCTGGTGAACCCAGAGCAAACAGAAGGG  879

seq1  ATGAACCACAGGCAGTTCCTGTCACCACAACACAGGTGACAACACAGAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCACAGGCAGTTCCTGTCACCACAACACAGGTGACAACACAGAGG  929

seq1  ATTCTAGTTCTATCCTAGATACAAGAGATTCTCCAAGGAAGGCATTACTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTTCTATCCTAGATACAAGAGATTCTCCAAGGAAGGCATTACTG  979

seq1  ATGATGTCATTAGCAACTGCCATGATCTACCTGCTAACTAGTTCTGCCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCATTAGCAACTGCCATGATCTACCTGCTAACTAGTTCTGCCCA  1029

seq1  GCTTGGTCCTTTTCTGGGGTGCCTCTCCTGGAGCCTCTCATGGACCCGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCCTTTTCTGGGGTGCCTCTCCTGGAGCCTCTCATGGACCCGTG  1079

seq1  GGATCCCCTTTGGCAACCTCTCCTTCCAAAGCTGGAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCCTTTGGCAACCTCTCCTTCCAAAGCTGGAGAATTC  1121