BAC Information

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BAC

Clone NameB6Ng01-088J14
Chromosome14 (Build37)
Map Location 111,477,486 - 111,478,041
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088J14.bB6Ng01-088J14.g
ACCDH901409DH901410
length1,234959
definitionDH901409|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J14, 5' end.DH901410|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagttctgtactccatttttaaaataagtttatttgtt
tctctggagtctgtcttctcgagttctttgtatgtattggatattagccc
tctatcagatgtaacattggtaaagatcttttctcaatctgttggttgcc
ttttgccctattgacagtgtcctttgccttagagaagctttgcaatttta
taaggtcccatttgtctattcttgatcttagaacataagatactgttatt
ctgttcaggaacatgtcctctgtgcccatgtgctcaaggttcttccccac
tttctcctctaaaagtttcagtgtctctggttttatgtggaggtccttta
tccacttggatatgagctttgtacaaagagataagaatggaacgatttgc
attatttttcctttttgggacaaaactagtgtcactttggaagagggaag
ttcctttggggaattttcatcatcacattggtgtgtcattcattactaat
tgctgagagagagtctagcccgctgtgggttatggcattccaggcatgtg
attctggattgtataaaaaagcaaactgaaaagaactcaagaagttagac
tctgaaaaacaacaacaacaacaacaacaaaacctatttaaaatggggta
catagttaaagaattctcaactgaggaatcttgaatagttgagaagcacc
taaggaaatgttcaaaataattaggggaatgcaaatcaaaacgaccctag
aattccaacttacaccaatcagaaaggctaagatcaaaaactcaggtgac
aacatatgttggccaggatgaagataaagaggaacactcctctactacaa
gctggtacagccactttggaaacaatatggcagaaaactggcatagttct
acttaaggacccagctataccacttctgactgtatatctagaaatgcttc
accatttcacaaagactcatgctcatgctcactctttcatagcagcctta
tttatatagacagagctcgaggaccagaatgttccttaacagaagatgat
acagaaaatgtgtacatttacaaattgaatatcatgataacatgatgata
actaagtagacaggagacagtcagtacagtatcctctaagggtcagctca
gttctgcttgatctggctggttcttatgagcactactcaattcatctttg
ccagtatccaacactttaaggcaactataccgca
gaattccataaagtcatagtatcagaagacataatatgtatatgatggtg
gacatttaggggtaagactgtgtgtgtgtgtgtgtgtgtgagagagagag
agagagagagagagagagagagagagacagacagacagacagacagagac
agagaggagagagagacagagacagagacaaagaggagatagagacagag
agaataatttaaagataagataaaacataaaattttaaaaagaaaagaaa
agaaaagaaaaacagaaaaggcctgacatgacaatgatcccgagatgatg
tccttgagttgtttcttttgttcatctactgctgggcttgtggttgaccc
ttaattgtagttagtttcccatgtgtaaattccttgaagcaaactagatt
ttcatttgcaagttgctatcaacaggaaataggttctaggtggggcaagt
gtccatttcacctttcagaattaggacaccatctaatgcaggcttgtgaa
agctctatgtaggctgcctcaaattttgtgagctcatatgtatgttatgt
tgtatttagaaggctaagttccatggcattctccatcaactctggccttc
acacttttctgcctcctcttctgctgggttccctgggccctgaggtgggt
gattgtcgcaagaaagacgcaaccaccggttcttctgcggcaagctttat
tgcttcttcaggagggaagatcccgaccctggaaaatggcgttgctttat
atagccctcagccatggcgttttcagcacctgatgtggtgtgtcagctcc
tgattcattgctcgcccattaccctattactacgccccgagatgggcagt
gacttaggcatgagttcactctcgcacctgtgtacaggctttgtttagta
gttaggcgcaacggaggccagcgccatcttataatggcgattgctagcgc
atgggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111477486_111478041
seq2: B6Ng01-088J14.g_67_622 (reverse)

seq1  AATACAACATAACATACATATGAGCTCACAAAATTTGAGGCAGCCTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACATAACATACATATGAGCTCACAAAATTTGAGGCAGCCTACAT  50

seq1  AGAGCTTTCACAAGCCTGCATTAGATGGTGTCCTAATTCTGAAAGGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTCACAAGCCTGCATTAGATGGTGTCCTAATTCTGAAAGGTGAA  100

seq1  ATGGACACTTGCCCCACCTAGAACCTATTTCCTGTTGATAGCAACTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACACTTGCCCCACCTAGAACCTATTTCCTGTTGATAGCAACTTGCA  150

seq1  AATGAAAATCTAGTTTGCTTCAAGGAATTTACACATGGGAAACTAACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATCTAGTTTGCTTCAAGGAATTTACACATGGGAAACTAACTAC  200

seq1  AATTAAGGGTCAACCACAAGCCCAGCAGTAGATGAACAAAAGAAACAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGGTCAACCACAAGCCCAGCAGTAGATGAACAAAAGAAACAACT  250

seq1  CAAGGACATCATCTCGGGATCATTGTCATGTCAGGCCTTTTCTGTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACATCATCTCGGGATCATTGTCATGTCAGGCCTTTTCTGTTTTTC  300

seq1  TTTTCTTTTCTTTTCTTTTTAAAATTTTATGTTTTATCTTATCTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTTTAAAATTTTATGTTTTATCTTATCTTTAAAT  350

seq1  TATTCTCTCTGTCTCTATCTCCTCTTTGTCTCTGTCTCTGTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTCTGTCTCTATCTCCTCTTTGTCTCTGTCTCTGTCTCTCTCTC  400

seq1  CTCTCTGTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCT  450

seq1  CTCTCTCTCTCTCTCTCACACACACACACACACACACAGTCTTACCCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCACACACACACACACACACACAGTCTTACCCCTA  500

seq1  AATGTCCACCATCATATACATATTATGTCTTCTGATACTATGACTTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCACCATCATATACATATTATGTCTTCTGATACTATGACTTTATG  550

seq1  GAATTC  556
      ||||||
seq2  GAATTC  556