BAC Information

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BAC

Clone NameB6Ng01-089A14
Chromosome14 (Build37)
Map Location 113,062,582 - 113,230,119
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089A14.bB6Ng01-089A14.g
ACCDH901727DH901728
length993778
definitionDH901727|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A14, 5' end.DH901728|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,229,436 - 113,230,119)(113,062,582 - 113,063,358)
sequence
gaattcacaggaaagaaatccaagcagagttagtagtccttccaagaaga
gaatgaaatctttcaggtgcgattcttttcccagattaggcaactcaaac
actagcccagcagtgtgttgtaaaggctgatagacttcttttacttcacc
ttacatttatcacttctgttcataaggagtctatcaagggggtgatgcac
gttttcttaccaatttgtcctttgacgtctgtggaagctgttcttgtatt
tcatgcgttaggtaattctcagtttgaagatttggaaagtgatttgattc
agtttaacttccttgattatgacaggtatcttagtgccacgaccatgaca
actcttttttttttttaaattggttattttatttgtttacatttcaaatg
ttgcccccttcctgatttcccctctgcaagcccccatcccaccccccttc
cttcatctccgatgaggctgctccccacccacccacccactcccaccttg
ggattacttcacatttgagaaatttactcaattgccttcatggaggaaag
tatggcattatccaagcagccatggtgctggagaggcagctaagagttct
gcatctaaattaacaagaagtagggaaccagtcactaggcctagcttgag
gatttggaatcccaaagtccatgcccattggtatgcttcctctatcaaga
acacatcaactttaacaaagccacagcttctagtccctgacaagtgctgc
cactactacaacctaatgacaacgcattgaaatgtatgagcttacgggag
ccacttctattcaaaggaaaacattctattccctggtccccataagcttg
tagacatattattattcaaaacgcatttatttctttttacggcatcttca
aagtctaaaacatgtcacactgtttaaaagtccaaagttcagactcttct
gagactcatgaaagtcttcttaagtaaaacccctatagaataa
gaattcagcctacaatctttagcataagcttctgacctggttcttttgtt
ttgtcttcactttctcaaaggtagcaactactctggcttaattcatgtta
ttctggattcacgcatgtccttcccttatatagctaatgaagtcatgaaa
attgtaggacaacccacaagtgctattttactaaaggtgattaacctcta
tggccagaaaaacaaaacaaaacaaaacaaacaaacaaacaaacaaacaa
aaacgtatttgtctaccctctaaataacagaacttccctttgcatcagat
aatgagcactgcagaaaaccagaaccagtcaaaatgcatagatgttaatt
tcagcttatatgtgtgtatatatatatatatatatacatatatatatata
tatatatatatgtatatatatatatatatatgattttttacggataatta
agaagaaagactgttatagctgtgtctctggagaggctccaccagtgcct
gacaaatacagagatggatcctcccagcctaccattggagtgatcacagg
gtcaccaatgaaagagctagagaaaagaaccaaggaactgaaaaggctag
gagcctcataggaggaacaacagtatgaaataaccagtacccccaaagtt
cccagggactaaatcaccaaccaaagagtacacatggtaggactcaaagg
ttccagttgcatatgtaacagaggatagatagcctagtaggtcatcagtg
ggaggaaaggcccttggtcttgtgaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_113229436_113230119
seq2: B6Ng01-089A14.b_46_729 (reverse)

seq1  ATACCAATGGGCATGGACTTTGGGATTCCAAATCCTCAAGCTAGGCCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAATGGGCATGGACTTTGGGATTCCAAATCCTCAAGCTAGGCCTAG  50

seq1  TGACTGGTTCCCTACTTCTTGTTAATTTAGATGCAGAACTCTTAGCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTTCCCTACTTCTTGTTAATTTAGATGCAGAACTCTTAGCTGCC  100

seq1  TCTCCAGCACCATGGCTGCTTGGATAATGCCATACTTTCCTCCATGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCACCATGGCTGCTTGGATAATGCCATACTTTCCTCCATGAAGG  150

seq1  CAATTGAGTAAATTTCTCAAATGTGAAGTAATCCCAAGGTGGGAGTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAGTAAATTTCTCAAATGTGAAGTAATCCCAAGGTGGGAGTGGGT  200

seq1  GGGTGGGTGGGGAGCAGCCTCATCGGAGATGAAGGAAGGGGGGTGGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTGGGGAGCAGCCTCATCGGAGATGAAGGAAGGGGGGTGGGATG  250

seq1  GGGGCTTGCAGAGGGGAAATCAGGAAGGGGGCAACATTTGAAATGTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTGCAGAGGGGAAATCAGGAAGGGGGCAACATTTGAAATGTAAAC  300

seq1  AAATAAAATAACCAATTTAAAAAAAAAAAAGAGTTGTCATGGTCGTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAACCAATTTAAAAAAAAAAAAGAGTTGTCATGGTCGTGGCA  350

seq1  CTAAGATACCTGTCATAATCAAGGAAGTTAAACTGAATCAAATCACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATACCTGTCATAATCAAGGAAGTTAAACTGAATCAAATCACTTTC  400

seq1  CAAATCTTCAAACTGAGAATTACCTAACGCATGAAATACAAGAACAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTCAAACTGAGAATTACCTAACGCATGAAATACAAGAACAGCTT  450

seq1  CCACAGACGTCAAAGGACAAATTGGTAAGAAAACGTGCATCACCCCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACGTCAAAGGACAAATTGGTAAGAAAACGTGCATCACCCCCTTG  500

seq1  ATAGACTCCTTATGAACAGAAGTGATAAATGTAAGGTGAAGTAAAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCCTTATGAACAGAAGTGATAAATGTAAGGTGAAGTAAAAGAAG  550

seq1  TCTATCAGCCTTTACAACACACTGCTGGGCTAGTGTTTGAGTTGCCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAGCCTTTACAACACACTGCTGGGCTAGTGTTTGAGTTGCCTAAT  600

seq1  CTGGGAAAAGAATCGCACCTGAAAGATTTCATTCTCTTCTTGGAAGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAAGAATCGCACCTGAAAGATTTCATTCTCTTCTTGGAAGGACT  650

seq1  ACTAACTCTGCTTGGATTTCTTTCCTGTGAATTC  684
      ||||||||||||||||||||||||||||||||||
seq2  ACTAACTCTGCTTGGATTTCTTTCCTGTGAATTC  684

seq1: chr14_113062582_113063358
seq2: B6Ng01-089A14.g_68_845

seq1  GAATTCAGCCTACAATCTTTAGCATAAGCTTCTGACCTGGTTCTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTACAATCTTTAGCATAAGCTTCTGACCTGGTTCTTTTGTT  50

seq1  TTGTCTTCACTTTCTCAAAGGTAGCAACTACTCTGGCTTAATTCATGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCACTTTCTCAAAGGTAGCAACTACTCTGGCTTAATTCATGTTA  100

seq1  TTCTGGATTCACGCATGTCCTTCCCTTATATAGCTAATGAAGTCATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATTCACGCATGTCCTTCCCTTATATAGCTAATGAAGTCATGAAA  150

seq1  ATTGTAGGACAACCCACAAGTGCTATTTTACTAAAGGTGATTAACCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGGACAACCCACAAGTGCTATTTTACTAAAGGTGATTAACCTCTA  200

seq1  TGGCCAGAAAAACAAAACAAAACAAAACAAACAAACAAACAAACAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGAAAAACAAAACAAAACAAAACAAACAAACAAACAAACAAACAA  250

seq1  AAACGTATTTGTCTACCCTCTAAATAACAGAACTTCCCTTTGCATCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTATTTGTCTACCCTCTAAATAACAGAACTTCCCTTTGCATCAGAT  300

seq1  AATGAGCACTGCAGAAAACCAGAACCAGTCAAAATGCATAGATGTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCACTGCAGAAAACCAGAACCAGTCAAAATGCATAGATGTTAATT  350

seq1  TCAGCTTATATGTGTGTATATATATATATATATATACATATATATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTATATGTGTGTATATATATATATATATATACATATATATATATA  400

seq1  TATATATATATGTATATATATATATATATATGATTTTTTACGGATAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATGTATATATATATATATATATGATTTTTTACGGATAATTA  450

seq1  AGAAGAAAGACTGTTATAGCTGTGTCTCTGGAGAGGCTCCACCAGTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGACTGTTATAGCTGTGTCTCTGGAGAGGCTCCACCAGTGCCT  500

seq1  GACAAATACAGAGATGGATCCTCCCAGCCTACCATTGGAGTGATCACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATACAGAGATGGATCCTCCCAGCCTACCATTGGAGTGATCACAGG  550

seq1  GTCACCAATGAAAGAGCTAGAGAAAAGAACCAAGGAACTGAAAAGGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAATGAAAGAGCTAGAGAAAAGAACCAAGGAACTGAAAAGGCTAG  600

seq1  GAGCCTCATAGGAGGAACAACAGTATGAAATAACCAGTACCCCCAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCATAGGAGGAACAACAGTATGAAATAACCAGTACCCCCAAAGTT  650

seq1  CCCAGGGACTAAATCACCAACCAAAGAGTACACATGGTAGGACTC-AAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCAGGGACTAAATCACCAACCAAAGAGTACACATGGTAGGACTCAAAGG  700

seq1  TTCCAGTTGCATATGTAACAGAGGATAGATAGCCTAGTAGGTCATCAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTGCATATGTAACAGAGGATAGATAGCCTAGTAGGTCATCAGTG  750

seq1  GGAGGAGAGGCCCTTGGTCTTGTGAACG  777
      |||||| |||||||||||||||||||||
seq2  GGAGGAAAGGCCCTTGGTCTTGTGAACG  778