BAC Information

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BAC

Clone NameB6Ng01-089A23
Chromosome14 (Build37)
Map Location 26,818,299 - 26,942,047
singlet/doubletdoublet
Overlap geneLOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213
Upstream geneLOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik
Downstream geneLOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089A23.bB6Ng01-089A23.g
ACCDH901745DH901746
length1,135359
definitionDH901745|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A23, 5' end.DH901746|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,818,299 - 26,819,436)(26,941,696 - 26,942,047)
sequence
gaattcctgctccttatttctataaagaaaacttatcttctccaagggtt
gagcccctcacattgaatgccagttgtgggggtctctgcaaacaccaggg
gaagcaagtaaggacacaaatgatgcaaaaaagaaaatctggctcaacat
gacctagctggcgtttgttcagccatttagagcagtggctctagaccttc
ctactgtgcaagcctttaatacagttctttaagtggtgatgacttccaac
catgaaattacttttgtttcaactttatagctgtaactttgctactctta
tgaatcctaacatatataactccctcagttgagaacaatggctctataat
ctaacagtatattttaggcatatttaagtataatacaactttggggaaat
gtttcctggtgaaaattatcacgataatgtttaaggaatgactatattga
aactcttttgcaaagtacatgggacctcttccataaggatgggttctatt
gactgtggagaaatgctcagcaaaaaggtctagggaggaagagttcagaa
taaacatagtagtctgggggattcagggaggcctgatcctacagatagta
caaatcaccagggtgttaactacatcattccttgctttctgagaggaagc
agaaagctcccctttcattgaagagacaaccctgagtgtttaacatctat
ggctttcctattgcttgcttgtgcaccaggacctcatgccatctccatct
aactcctggataatattttgtttttgttttttttcaggacagggtttctc
tgtagccctggctgtcctggaactcactttgtagaccaggctggcctcaa
actcagaaatccgcctgcctctgcctcccaagtgctggaactaaaggtgt
gcaccaccacgctctagataatttaaaagttgtttattattgtatgcttg
tgtattatgtgtgtagaagtgtgtgtgaaagcacatgtgtgcacatggag
ggcagaagcagcttgctggagtcaggtctcttcttttgctgtgggttctg
gggatcgtcaccagtcagcttgtaggcaagcacttcactatactggatca
gcctcatcacgcctttgtgtaacgctcttaattga
tttctcccttccgttaagctgtctctctggggaacttgttagagcaatgt
aaaatttgactaacacagccacctaggaggaatttgaagaaattaccaca
gaggagaagttgaagttggaagagtgcagattcttctgggtaattttgca
tctaccctaacacctctctgtatatggttttacttctgagctctctagag
tgtacctgtattttatttttataatcatcatcgccatcctctcccctcct
cctcctcctcctcctcctcctcctactcctcctgctcctgctcctcctcc
tcctcctgctcctgctcctcctcttcctgtttctgctcatccccctccat
tttcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_26818299_26819436
seq2: B6Ng01-089A23.b_34_1168

seq1  GAATTCCTGCTCCTTATTTCTATAAAGAAAACTTATCTTCTCCAAGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTCCTTATTTCTATAAAGAAAACTTATCTTCTCCAAGGGTT  50

seq1  GAGCCCCTCACATTGAATGCCAGTTGTGGGGGTCTCTGCAAACACCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTCACATTGAATGCCAGTTGTGGGGGTCTCTGCAAACACCAGGG  100

seq1  GAAGCAAGTAAGGACACAAATGATGCAAAAAAGAAAATCTGGCTCAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGTAAGGACACAAATGATGCAAAAAAGAAAATCTGGCTCAACAT  150

seq1  GACCTAGCTGGCGTTTGTTCAGCCATTTAGAGCAGTGGCTCTAGACCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGCTGGCGTTTGTTCAGCCATTTAGAGCAGTGGCTCTAGACCTTC  200

seq1  CTACTGTGCAAGCCTTTAATACAGTTCTTTAAGTGGTGATGACTTCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGCAAGCCTTTAATACAGTTCTTTAAGTGGTGATGACTTCCAAC  250

seq1  CATGAAATTACTTTTGTTTCAACTTTATAGCTGTAACTTTGCTACTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATTACTTTTGTTTCAACTTTATAGCTGTAACTTTGCTACTCTTA  300

seq1  TGAATCCTAACATATATAACTCCCTCAGTTGAGAACAATGGCTCTATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTAACATATATAACTCCCTCAGTTGAGAACAATGGCTCTATAAT  350

seq1  CTAACAGTATATTTTAGGCATATTTAAGTATAATACAACTTTGGGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGTATATTTTAGGCATATTTAAGTATAATACAACTTTGGGGAAAT  400

seq1  GTTTCCTGGTGAAAATTATCACGATAATGTTTAAGGAATGACTATATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGGTGAAAATTATCACGATAATGTTTAAGGAATGACTATATTGA  450

seq1  AACTCTTTTGCAAAGTACATGGGACCTCTTCCATAAGGATGGGTTCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTTGCAAAGTACATGGGACCTCTTCCATAAGGATGGGTTCTATT  500

seq1  GACTGTGGAGAAATGCTCAGCAAAAAGGTCTAGGGAGGAAGAGTTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGAGAAATGCTCAGCAAAAAGGTCTAGGGAGGAAGAGTTCAGAA  550

seq1  TAAACATAGTAGTCTGGGGGATTCAGGGAGGCCTGATCCTACAGATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAGTAGTCTGGGGGATTCAGGGAGGCCTGATCCTACAGATAGTA  600

seq1  CAAATCACCAGGGTGTTAACTACATCATTCCTTGCTTTCTGAGAGGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACCAGGGTGTTAACTACATCATTCCTTGCTTTCTGAGAGGAAGC  650

seq1  AGAAAGCTCCCCTTTCATTGAAGAGACAACCCTGAGTGTTTAACATCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTCCCCTTTCATTGAAGAGACAACCCTGAGTGTTTAACATCTAT  700

seq1  GGCTTTCCTATTGCTTGCTTGTGCACCAGGACCTCATGCCATCTCCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCTATTGCTTGCTTGTGCACCAGGACCTCATGCCATCTCCATCT  750

seq1  AACTCCTGGATAATATTTTGTTTTTGTTTTTTTTCAGGACAGGGTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGGATAATATTTTGTTTTTGTTTTTTTTCAGGACAGGGTTTCTC  800

seq1  TGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAA  850

seq1  ACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGGTGT  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGAACTAAAGGTGT  900

seq1  GCACCACCACGCTCTAGATAATTTTAAAAAGTTGTTTATTATTGTATGCT  950
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  GCACCACCACGCTCTAGATAATTT--AAAAGTTGTTTATTATTGTATGCT  948

seq1  TGTGTATTATGTGTGTAGAAGTGTGTGTGAAAGCACATGTGTGCACATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTATGTGTGTAGAAGTGTGTGTGAAAGCACATGTGTGCACATGG  998

seq1  AGGGCAGAAGCAGCTTGCTGGAGTCAGTTCTCTCCTTTGGCTGTGGGTTC  1050
      ||||||||||||||||||||||||||| ||||| |||| |||||||||||
seq2  AGGGCAGAAGCAGCTTGCTGGAGTCAGGTCTCTTCTTTTGCTGTGGGTTC  1048

seq1  TGGGGATCGAACACAGGTCAGGCTTGGTAGCAAGCACTTTCACT-TACTG  1099
      |||||||||  |||  |||| |||||   |||||||| |||||| |||||
seq2  TGGGGATCG-TCACCAGTCA-GCTTGTAGGCAAGCAC-TTCACTATACTG  1095

seq1  AGTCAG-CTCATCAGCCCTTTGTGTAACGCTCTTATTTGA  1138
        |||| |||||||  ||||||||||||||||||| ||||
seq2  GATCAGCCTCATCACGCCTTTGTGTAACGCTCTTAATTGA  1135

seq1: chr14_26941696_26942047
seq2: B6Ng01-089A23.g_65_429 (reverse)

seq1  ---AAGAA----------GAGGAGCAGGAGCAGGAGGAGGAGGAGCAGGA  37
         |||||          || |||||| | ||||| ||||||||||||||
seq2  AAGAAGAAAATGGAGGGGGATGAGCAGAAACAGGAAGAGGAGGAGCAGGA  50

seq1  GCAGGAGGAGGAGGAGGAGCAGGAGCAGGAGGAGCAGGAGGAGGAGGAGG  87
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAGGAGGAGGAGGAGGAGCAGGAGCAGGAGGAGTAGGAGGAGGAGGAGG  100

seq1  AGGAGGAGGAGGAGGGGAGAGGATGGCGATGATGATTATAAAAATAAAAT  137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGAGGAGGGGAGAGGATGGCGATGATGATTATAAAAATAAAAT  150

seq1  ACAGGTACACTCTAGAGAGCTCAGAAGTAAAACCATATACAGAGAGGTGT  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACACTCTAGAGAGCTCAGAAGTAAAACCATATACAGAGAGGTGT  200

seq1  TAGGGTAGATGCAAAATTACCCAGAAGAATCTGCACTCTTCCAACTTCAA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGATGCAAAATTACCCAGAAGAATCTGCACTCTTCCAACTTCAA  250

seq1  CTTCTCCTCTGTGGTAATTTCTTCAAATTCCTCCTAGGTGGCTGTGTTAG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTCTGTGGTAATTTCTTCAAATTCCTCCTAGGTGGCTGTGTTAG  300

seq1  TCAAATTTTACATTGCTCTAACAAGTTCCCCAGAGAGACAGCTTAACGGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTTACATTGCTCTAACAAGTTCCCCAGAGAGACAGCTTAACGGA  350

seq1  AGGGAGAAAGAATTC  352
      |||||||||||||||
seq2  AGGGAGAAAGAATTC  365