BAC Information

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BAC

Clone NameB6Ng01-089B08
Chromosome14 (Build37)
Map Location 75,857,561 - 76,061,791
singlet/doubletdoublet
Overlap geneGm912, Spert, 4930564B18Rik
Upstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13
Downstream geneCog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089B08.bB6Ng01-089B08.g
ACCDH901756DH901757
length7571,051
definitionDH901756|Mus musculus domesticus DNA, BAC clone: B6Ng01-089B08, 5' end.DH901757|Mus musculus domesticus DNA, BAC clone: B6Ng01-089B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,857,561 - 75,858,314)(76,060,733 - 76,061,791)
sequence
gaattctcttccagtcatccttggcagagcaagtacatcgtaaccatatt
aaaaatactcttgaattccattccacggccactttggagaccttactcca
atcccattattttgtcaactcgtattagttacttccctgcggcaagaaat
attgtttactcctgttttacattttaataccttttaaaattatgcaatat
aagcagctctaaagtttgaatttacgtgatgctctgactgtgcccaagga
cggagaagggagggtgctcaggtcttgccgagcagcaaggggaaagtatc
tgtgtacgttctgtagtgatgactgcttaatgcccacaacaaccttggct
tagggtcggggtaaaaggctttgagataccttggacaactgtgtgaatga
atgccgcaacctttctaagccttcccttcctcatcttgaagacaaaccta
gaaatatctatcctgccttctccgcagctttctgaagctgccaggagata
ctacagggagggggaaatgaataaatgtgtttgtaataatctctcctcta
aacacacatatacatacacacatacatacacatacacacaccatacacac
acacacacacacacacacacaccttgcatgtaatttatggcttttcaaag
agtgtcacttaaagctttaagacaacttatgctcctgtaatcaggaacag
aaatacatgtcatgcttttaaggagtgattttttttttcatggcttttgt
tgtgtgt
gaattctttgataacccccctgcccctgtaacgtgttttacatattctag
tgtggcattggagtttgcccggtccaagaagctcttctctgtgcctttaa
aattgttccaacatctccctgcagggtttctagtgctttttcactttttt
tttttttttgctagcaggtcgtttattttcaacgcctcgtgctttataca
cagttccattcgcttgacagcattgtgtttgtcctactccagtgggtaat
atatttacacagatccagcacatggaggggacatgttaagaatacttgat
ccatactgtgccgaagaaaagcaagagctgctatttttcagtattagcat
tacactcggtatttggacagcggagatcttaggatcccaagagggagcct
gatggtagaggcacacagagaagaatttgctggccatagagcagtcattt
ctgcaatgctcagcttccacaagggtagcaggaattgaggatgctatagc
tgaagagatccaagagaatgtaaggataaacgctgagggtaacaaaacca
gtcccaggaatatagtttagtttcttaatttaggtccgcatcaagatgat
tcagatgactcggggcttttagtttctctacctgattggatatgatcatg
catttcaggacatcctgggaagatgccacatgaatctctatgccaggaca
cattagctagagctcgcaaattagcgcagtgggccgttgttgccaaagta
aaacccaacgcaaggtgatgctgacattccaagaatgggactgtaaaaaa
atgtcagtccttggctgagagcccatcacttcagcagtgtgtaaggaata
tcccttctagtgggggctgcatctgggatgcagtgtctggtggcctaggc
cagactgtaagcctgtgttttaggaaatacctctacgtgttgaagatggc
ctgggtctctgctctactcctgagtgctgggatcacgcatgcaccactca
tccagttagttgtttaagggccaaccctagggcctcatggtgctaccaag
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_75857561_75858314
seq2: B6Ng01-089B08.b_47_803

seq1  GAATTCTCTTCCAGTCATCCTTGGCAGAGCAAGTACATCGTAACCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCAGTCATCCTTGGCAGAGCAAGTACATCGTAACCATATT  50

seq1  AAAAATACTCTTGAATTCCATTCCACGGCCACTTTGGAGACCTTACTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACTCTTGAATTCCATTCCACGGCCACTTTGGAGACCTTACTCCA  100

seq1  ATCCCATTATTTTGTCAACTCGTATTAGTTACTTCCCTGCGGCAAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTATTTTGTCAACTCGTATTAGTTACTTCCCTGCGGCAAGAAAT  150

seq1  ATTGTTTACTCCTGTTTTACATTTTAATACCTTTTAAAATTATGCAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTACTCCTGTTTTACATTTTAATACCTTTTAAAATTATGCAATAT  200

seq1  AAGCAGCTCTAAAGTTTGAATTTACGTGATGCTCTGACTGTGCCCAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTCTAAAGTTTGAATTTACGTGATGCTCTGACTGTGCCCAAGGA  250

seq1  CGGAGAAGGGAGGGTGCTCAGGTCTTGCCGAGCAGCAAGGGGAAAGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAAGGGAGGGTGCTCAGGTCTTGCCGAGCAGCAAGGGGAAAGTATC  300

seq1  TGTGTACGTTCTGTAGTGATGACTGCTTAATGCCCACAACAACCTTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACGTTCTGTAGTGATGACTGCTTAATGCCCACAACAACCTTGGCT  350

seq1  TAGGGTCGGGGTAAAAGGCTTTGAGATACCTTGGACAACTGTGTGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCGGGGTAAAAGGCTTTGAGATACCTTGGACAACTGTGTGAATGA  400

seq1  ATGCCGCAACCTTTCTAAGCCTTCCCTTCCTCATCTTGAAGACAAACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGCAACCTTTCTAAGCCTTCCCTTCCTCATCTTGAAGACAAACCTA  450

seq1  GAAATATCTATCCTGCCTTCTCCGCAGCTTTCTGAAGCTGCCAGGAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCTATCCTGCCTTCTCCGCAGCTTTCTGAAGCTGCCAGGAGATA  500

seq1  CTACAGGGAGGGGGAAATGAATAAATGTGTTTGTAATAATCTCTCCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGGAGGGGGAAATGAATAAATGTGTTTGTAATAATCTCTCCTCTA  550

seq1  AACACACATATACATACACACATACATACACATACACACACCATACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACATATACATACACACATACATACACATACACACACCATACACAC  600

seq1  ACACACACACACACACACACACCTTGCATGTAATTTATGGCTTTTCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACCTTGCATGTAATTTATGGCTTTTCAAAG  650

seq1  AGTGTCACTTAAAGCTTTAAGACAACTTATGCTCCTGTAATCAGGAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACTTAAAGCTTTAAGACAACTTATGCTCCTGTAATCAGGAACAG  700

seq1  AAATACATGTCATGCTTTTAAGGAGTGA-TTTTTTTTTCATGGCTTT--G  747
      |||||||||||||||||||||||||||| ||||||||||||||||||   
seq2  AAATACATGTCATGCTTTTAAGGAGTGATTTTTTTTTTCATGGCTTTTGT  750

seq1  TGTGTGT  754
      |||||||
seq2  TGTGTGT  757

seq1: chr14_76060733_76061791
seq2: B6Ng01-089B08.g_72_1122 (reverse)

seq1  GCTTGGTAGCACCCATGAGGCCCTAGGGTTGGCCCCTTACACCACATAAA  50
      ||||||||||| |||||||||||||||||||| |||||| || ||   ||
seq2  GCTTGGTAGCA-CCATGAGGCCCTAGGGTTGG-CCCTTAAACAAC--TAA  46

seq1  CTGGATGTGGTGGTGCATGCCGGTGATCCCAGCACTCAGGAAGTAGAGCA  100
      |||||||  |||||||||||  |||||||||||||||||| |||||||||
seq2  CTGGATG-AGTGGTGCATGC--GTGATCCCAGCACTCAGG-AGTAGAGCA  92

seq1  GAGACCCAAGGCCATCCTCAAACACGTAGAGGGTATTTCCTAGAACACAG  150
      ||||||| |||||||| || |||||||||| ||||||||||| |||||||
seq2  GAGACCC-AGGCCATCTTC-AACACGTAGA-GGTATTTCCTAAAACACAG  139

seq1  GCCTACAGTCTGGCACTAGGCCACCAGACACTGCTTCCCAGATGCAGCCC  200
      || ||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  GCTTACAGTCTGGC-CTAGGCCACCAGACACTGCATCCCAGATGCAGCCC  188

seq1  CCACTAGAAGGGATATTCTTACCACACTGCTG-AGTGAT-GGCTCTCAGC  248
      |||||||||||||||||| |  |||||||||| |||||| ||||||||||
seq2  CCACTAGAAGGGATATTCCTTACACACTGCTGAAGTGATGGGCTCTCAGC  238

seq1  CAAGGACTGACATTTTTTTACAGTCCCATTCTTGGAATTGTCAGCATCAC  298
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAGGACTGACATTTTTTTACAGTCCCATTCTTGGAA-TGTCAGCATCAC  287

seq1  CTTGCGTTGGGTTTTACTTTGGCAACAACGG-CCACTGCGCT-ATTTGCG  346
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  CTTGCGTTGGGTTTTACTTTGGCAACAACGGCCCACTGCGCTAATTTGCG  337

seq1  AGCTCTAGCTAATGTGTCCTGGCATAGAGATTCATGTGGCATCTTCCCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGCTAATGTGTCCTGGCATAGAGATTCATGTGGCATCTTCCCAG  387

seq1  GATGTCCTG-AATGCATGATCATATCCAATCAGGTAGAGAAACTAAAAGC  445
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCTGAAATGCATGATCATATCCAATCAGGTAGAGAAACTAAAAGC  437

seq1  CCCGAGTCATCTGAATCATCTTGATGCGGACCTAAATTAAG-AACTAAAC  494
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCGAGTCATCTGAATCATCTTGATGCGGACCTAAATTAAGAAACTAAAC  487

seq1  TATATTCCTGGGACTGGTTTTGTTACCCTCAGCGTTTATCCTTACATTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCTGGGACTGGTTTTGTTACCCTCAGCGTTTATCCTTACATTCT  537

seq1  CTTGGATCTCTTCAGCTATAGCATCCTCAATTCCTGCTACCCTTGTGGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATCTCTTCAGCTATAGCATCCTCAATTCCTGCTACCCTTGTGGAA  587

seq1  GCTGAGCATTGCAGAAATGACTGCTCTATGGCCAGCAAATTCTTCTCTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCATTGCAGAAATGACTGCTCTATGGCCAGCAAATTCTTCTCTGT  637

seq1  GTGCCTCTACCATCAGGCTCCCTCTTGGGATCCTAAGATCTCCGCTGTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTACCATCAGGCTCCCTCTTGGGATCCTAAGATCTCCGCTGTCC  687

seq1  AAATACCGAGTGTAATGCTAATACTGAAAAATAGCAGCTCTTGCTTTTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCGAGTGTAATGCTAATACTGAAAAATAGCAGCTCTTGCTTTTCT  737

seq1  TCGGCACAGTATGGATCAAGTATTCTTAACATGTCCCCTCCATGTGCTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCACAGTATGGATCAAGTATTCTTAACATGTCCCCTCCATGTGCTGG  787

seq1  ATCTGTGTAAATATATTACCCACTGGAGTAGGACAAACACAATGCTGTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTAAATATATTACCCACTGGAGTAGGACAAACACAATGCTGTCA  837

seq1  AGCGAATGGAACTGTGTATAAAGCACGAGGCGTTGAAAATAAACGACCTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAATGGAACTGTGTATAAAGCACGAGGCGTTGAAAATAAACGACCTG  887

seq1  CTAGCAAAAAAAAAAAAAAAGTGAAAAAGCACTAGAAACCCTGCAGGGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAAAAAAAAAAAAAAGTGAAAAAGCACTAGAAACCCTGCAGGGAG  937

seq1  ATGTTGGAACAATTTTAAAGGCACAGAGAAGAGCTTCTTGGACCGGGCAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGAACAATTTTAAAGGCACAGAGAAGAGCTTCTTGGACCGGGCAA  987

seq1  ACTCCAATGCCACACTAGAATATGTAAAACACGTTACAGGGGCAGGGGGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAATGCCACACTAGAATATGTAAAACACGTTACAGGGGCAGGGGGG  1037

seq1  TTAACAAGAGAATTC  1059
      ||| ||| |||||||
seq2  TTATCAA-AGAATTC  1051