BAC Information

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BAC

Clone NameB6Ng01-089D06
Chromosome14 (Build37)
Map Location 78,083,243 - 78,285,828
singlet/doubletdoublet
Overlap geneD230005D02Rik, Gm1587, Dnajc15
Upstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, LOC100043755, LOC676171, EG629678
Downstream geneEpsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089D06.bB6Ng01-089D06.g
ACCDH901841DH901842
length2251,140
definitionDH901841|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D06, 5' end.DH901842|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,285,604 - 78,285,828)(78,083,243 - 78,084,396)
sequence
tcaagggagaatgtggtcagtggctaaatcgaccattgtgccaacctaag
aattttagataggtttgatactatttcttaaagtttctgtaatgtgtttt
gttgcccaagtgattgacagtcctattgttagtagctatatttaaggctt
gatttcatttatttattttgtgtgtgtatgcatgcatgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtga
gaattcttcagttggaaaagatactaataggtgcctggagggctttttgt
gaaaggcagcagcacacagcacagcggttccgacctagaacgggacagtg
ctggttcaagttccaagtctgcttctttactgatcatgttgccttagtca
agcctgagctttgttatgcctgattttcctcctctgtggtatagaaatgt
agcccctgacctcatacgttaggtttgttttgtgttaagtcaaggtctcc
ctggactcgaactcctgttcctcttgtctcagcttttcacagggttttag
tgagaattagatgggttcatatttgtagagtgcttctcacattccctccc
tctaataagtcccatgtagtgtttgttgaacaagtacatattgaggtggt
cttaaagggaaactgctgtatgtggatacctctgacacctcagccccagc
cttcacctgcatgtctctagacggtgcttctcaggctataaagccagttc
ttgcccactgtcatcggtgctatgggaaactgcagagaacacggttcctg
gatggagctgtccccagacatagtgcctatgctgtggacccagccaaccc
cactgaggtgcaatgtctcagaatattaaatacggtcacacccgtgatga
gttgctgtacttcggctgagggcacagcccagctgcctccttttccagct
gtctctctgacacaccttttgggcctctggggcttccccttagctgaccc
agtacatcaaaggctgctagataaggatgcaggtaagagagagaccttga
ccttcaggactggcaatgctgagatctagaaaccagtgaaatgtcagaat
tcctttctctttcttttagatgactactatgcaagtgatttattttgtgt
tttcagaattttctatataatattggtattatatcatgtcccctctcctc
ctcatcccttaaactcttccacaagggcctgcctccaattcatcttaaag
tctagccttttttctttaattatcatggtaatatatatacctacctgtaa
aaaatcactaaagttcatttctgtgcctccatcagggttaggatgaactg
acaatttaaaacttgaaatcaacaagagctctcccctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78285604_78285828
seq2: B6Ng01-089D06.b_52_276 (reverse)

seq1  TCACACACACACACACACACACACACACACACACACACATGCATGCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACACACACATGCATGCATAC  50

seq1  ACACACAAAATAAATAAATGAAATCAAGCCTTAAATATAGCTACTAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAATAAATAAATGAAATCAAGCCTTAAATATAGCTACTAACAA  100

seq1  TAGGACTGTCAATCACTTGGGCAACAAAACACATTACAGAAACTTTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTGTCAATCACTTGGGCAACAAAACACATTACAGAAACTTTAAGA  150

seq1  AATAGTATCAAACCTATCTAAAATTCTTAGGTTGGCACAATGGTCGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATCAAACCTATCTAAAATTCTTAGGTTGGCACAATGGTCGATTT  200

seq1  AGCCACTGACCACATTCTCCCTTGA  225
      |||||||||||||||||||||||||
seq2  AGCCACTGACCACATTCTCCCTTGA  225

seq1: chr14_78083243_78084396
seq2: B6Ng01-089D06.g_68_1207

seq1  GAATTCTTCAGTTGGAAAAGATACTAATAGGTGCCTGGAGGGCTTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTTGGAAAAGATACTAATAGGTGCCTGGAGGGCTTTTTGT  50

seq1  GAAAGGCAGCAGCACACAGCACAGCGGTTCCGACCTAGAACGGGACAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCAGCAGCACACAGCACAGCGGTTCCGACCTAGAACGGGACAGTG  100

seq1  CTGGTTCAAGTTCCAAGTCTGCTTCTTTACTGATCATGTTGCCTTAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCAAGTTCCAAGTCTGCTTCTTTACTGATCATGTTGCCTTAGTCA  150

seq1  AGCCTGAGCTTTGTTATGCCTGATTTTCCTCCTCTGTGGTATAGAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGCTTTGTTATGCCTGATTTTCCTCCTCTGTGGTATAGAAATGT  200

seq1  AGCCCCTGACCTCATACGTTAGGTTTGTTTTGTGTTAAGTCAAGGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGACCTCATACGTTAGGTTTGTTTTGTGTTAAGTCAAGGTCTCC  250

seq1  CTGGACTCGAACTCCTGTTCCTCTTGTCTCAGCTTTTCACAGGGTTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCGAACTCCTGTTCCTCTTGTCTCAGCTTTTCACAGGGTTTTAG  300

seq1  TGAGAATTAGATGGGTTCATATTTGTAGAGTGCTTCTCACATTCCCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTAGATGGGTTCATATTTGTAGAGTGCTTCTCACATTCCCTCCC  350

seq1  TCTAATAAGTCCCATGTAGTGTTTGTTGAACAAGTACATATTGAGGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAGTCCCATGTAGTGTTTGTTGAACAAGTACATATTGAGGTGGT  400

seq1  CTTAAAGGGAAACTGCTGTATGTGGATACCTCTGACACCTCAGCCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGGAAACTGCTGTATGTGGATACCTCTGACACCTCAGCCCCAGC  450

seq1  CTTCACCTGCATGTCTCTAGACGGTGCTTCTCAGGCTATAAAGCCAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCTGCATGTCTCTAGACGGTGCTTCTCAGGCTATAAAGCCAGTTC  500

seq1  TTGCCCACTGTCATCGGTGCTATGGGAAACTGCAGAGAACACGGTTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCACTGTCATCGGTGCTATGGGAAACTGCAGAGAACACGGTTCCTG  550

seq1  GATGGAGCTGTCCCCAGACATAGTGCCTATGCTGTGGACCCAGCCAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCTGTCCCCAGACATAGTGCCTATGCTGTGGACCCAGCCAACCC  600

seq1  CACTGAGGTGCAATGTCTCAGAATATTAAATACGGTCACA-CCGTGATGA  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACTGAGGTGCAATGTCTCAGAATATTAAATACGGTCACACCCGTGATGA  650

seq1  GTTGCTGTACTTCGGCTGAGGGCACAGCCCAGCTGCCTCC-TTTCCAGCT  698
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTGCTGTACTTCGGCTGAGGGCACAGCCCAGCTGCCTCCTTTTCCAGCT  700

seq1  GTCTCTCTGACACACCTTTTGGGCCTCTGGGGCTTCCCCTTAGCTGACCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGACACACCTTTTGGGCCTCTGGGGCTTCCCCTTAGCTGACCC  750

seq1  AGTACATCAAAGGCTGCTAGATAAGGATGCAGGTAAGAGAGAGACCTTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCAAAGGCTGCTAGATAAGGATGCAGGTAAGAGAGAGACCTTGA  800

seq1  CCTTCAGGACTGGCAATGCTGAGATCTAGAAACCAGTGAAATGTCAGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGACTGGCAATGCTGAGATCTAGAAACCAGTGAAATGTCAGAAT  850

seq1  TTCCTTTTCTCTTTCTTTTAAGATGACTACTATGCAAGTGATTTTATTTT  898
      |  | |||||||||||||| ||||||||||||||||||||| ||||||||
seq2  T--CCTTTCTCTTTCTTTT-AGATGACTACTATGCAAGTGA-TTTATTTT  896

seq1  GTGTTTTCTAGAATTTTCTATATAAATATTTGTATTTATATCATGTCCCC  948
      |||||||| |||||||||||||| |||||| ||| |||||||||||||||
seq2  GTGTTTTC-AGAATTTTCTATAT-AATATTGGTA-TTATATCATGTCCCC  943

seq1  TCTCCCTCTCATCCCTTAAACTCTTCCCACAGGGCCTGCCTCCAATTCCA  998
      |||||  ||||||||||||||||||||   ||||||||||||||||| ||
seq2  TCTCCTCCTCATCCCTTAAACTCTTCCACAAGGGCCTGCCTCCAATT-CA  992

seq1  TCTTAAAGTCATAGCCTTTTATTCTTTAATTATCATTGTTATATATATAC  1048
      |||||||||| ||||||||| ||||||||||||||| || ||||||||||
seq2  TCTTAAAGTC-TAGCCTTTT-TTCTTTAATTATCATGGTAATATATATAC  1040

seq1  TTACATGTAAAAATACACT-AAGTTCATTTCATGTTGCTCATATTCATGT  1097
       ||| ||||||||  |||| ||||||||||| |||  |||     |||  
seq2  CTACCTGTAAAAAATCACTAAAGTTCATTTC-TGTGCCTC-----CATCA  1084

seq1  GTTTAGGGATG-ACTGACAATTTAAGACTGGACAATCCATCAAGAGCTCT  1146
      |  |  ||||| ||||||||||||| ||| || ||| || ||||||||||
seq2  GGGTTAGGATGAACTGACAATTTAAAACTTGA-AAT-CAACAAGAGCTCT  1132

seq1  TCCCTAGA  1154
       |||||||
seq2  CCCCTAGA  1140