BAC Information

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BAC

Clone NameB6Ng01-089J18
Chromosome14 (Build37)
Map Location 11,142,991 - 11,280,534
singlet/doubletdoublet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089J18.bB6Ng01-089J18.g
ACCDH902144DH902145
length1,1231,154
definitionDH902144|Mus musculus domesticus DNA, BAC clone: B6Ng01-089J18, 5' end.DH902145|Mus musculus domesticus DNA, BAC clone: B6Ng01-089J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,279,395 - 11,280,534)(11,142,991 - 11,143,653)
sequence
gaattctaccttgccctttgtcaactttctgctgaatttggtaggaaatg
tacacaaaaatagttcagctataataggagacacgtttggatttcagccc
cagaacaaatagggagcaagtggtgctgaggaaggcctggctttacctgc
catgggagatatagaacaaaacagatatttgaaaggaaagaatggatctc
tgtcatgaggggttttctgaaactgtcctcaaggtgactggagtggcatg
gtgactcgtccaaggatgcttcgtcccaggtatagagatggtggttgctg
agctcagaagagcttctcctcctgtgaatgaagaccgaggtcaaaaggag
gagcacaacttacagctgaagaggaactctttagaagtggcccctctaga
ggcttaagctcgcttccagggacaagttttttagttctctttgcttcagg
agataggtgctgtttaagtgttgagaaggctgatggtgcccttcctgtag
gtactacctgtgacgacatagcttggaaactcaaggttctaattttaaaa
ccagggatttctgatttgtcatagaacttcagctactgttcattttgttt
taaaaatagcattacattctttcattcttacagcaatgttatatggctct
gatgcctttcttattagggaaaagcaggtaagaatttgatggcaaggaag
agagaagtaggaatgaggcattacgttgtaaccatcagctcaaagagatg
tgtggtatacagactctctcatttttcaatgggattagagcaggtccaag
tggaccatggggcctagaagttgcttggttctttgaattccccatttccc
aactgctactccttaattctaccagttagtaagtcttactgattcttcta
acatctgaccatatctactctgcttctgctacttcactgaatcaagtcct
tcccattcgtctctgcctcctctctgcactctctgactagtgtttctgca
atgtgctggctatgtagttcatctctttgcactttggaagagtcttctct
acaagtcatattactctggctaatgactctaaagatcccattacattaac
gcaagttaaatgatgtagcccct
gaattctttgtttagctctgcaccccatttttaatggggttatttgattt
tttggagtccaccttcttgagttctttatatacattggatattagtcccc
tatttgatttaggataggtaaaaatcctttcccaatcttttggtggcctt
acaggctgagaaagaatttagggaaacaacacccttctcaatagtcacaa
ataacataaaacaccttggcgtgactctaactaaggaagtgaaagatcta
tacgataagaacttcaagtctctgaagaaagaaattaaagaagatctcag
aagatggaaagatctcccatgctcattggcaggatcaatatagtaaaaat
ggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaa
ttccaactcaattcttcaatgaattagaaagggcaatttgcaaattaatc
tggaataacaaaaaacctaggatagcaaaaactctgctcaaggataaaag
aatctctggtggaatcaccatgcctgacctaaagctgtactacagagcaa
ttgtgatcaaaactgcatggtatagcaacagacaagtagaccaatggaat
agaattgaagacccagaaatgaacccacacacctatggtcacttgatctt
tgacaagggagcaaaaaccatccagtggataaaagacagcatttttcaac
aaatggtgctggcacaactggcagttaccatgtagaagaatgcaaattga
tccattctctctctccttgtcctaaggtcaaatctaagtggattaagaaa
ctccacataaaaccagagacactgaaacttatagaggagaaagtaaggaa
aagcctcaaagatatgggtacaggggaaaaattcctgaatagaacagcta
tggcttgtgctgtaagatcgagattcgacaatgggacttataaattgcaa
agcttctgcaaggcaaaagacactgttcaataagggcaactttaaacaca
gtttgaggttaactaagattgaaactggcatgtctcctctcatggagtat
ggaccatagcaatggcttcatttcttgcctggatgaaaggtttagactga
cgaacttcatgctctcatacctctatctttgccaaagaatctcagtgatc
atct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_11279395_11280534
seq2: B6Ng01-089J18.b_49_1171 (reverse)

seq1  AGGGGCTACATCATTTAAACTTCGTTTAAATGTAAATGGGATCCTTTAAG  50
      ||||||||||||||||||  | ||||  ||||| |||||||||  || ||
seq2  AGGGGCTACATCATTTAACTTGCGTT--AATGT-AATGGGATC--TTTAG  45

seq1  AGGTCATTTAGCAAGAGGTAATATGAAATTTGTAGAGAAGACTC-TCCAA  99
      | |||| ||||| ||| ||||||||  | ||||||||||||||| |||||
seq2  A-GTCA-TTAGCCAGA-GTAATATG--ACTTGTAGAGAAGACTCTTCCAA  90

seq1  AGTGCAAAGAGAATGAACTACATAGCCAAGCAACATTGCAAGAAACACTA  149
      ||||||||||| ||||||||||||||| ||| ||||||| ||||||||||
seq2  AGTGCAAAGAG-ATGAACTACATAGCC-AGC-ACATTGC-AGAAACACTA  136

seq1  GTCAAGAGAGTGCAGAGAGGAGGCAGAGACGAATGGGAAGGACTTGATTC  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTC-AGAGAGTGCAGAGAGGAGGCAGAGACGAATGGGAAGGACTTGATTC  185

seq1  AGTGAAGTAGCAGAAAGCAGAGTAAGATATGGTCAGATGTTAGAAGAATC  249
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  AGTGAAGTAGCAG-AAGCAGAGT-AGATATGGTCAGATGTTAGAAGAATC  233

seq1  AGTAAGACTTACTAACTGGTAGAATTAAGGAGTAGCAGTTGGGAAATGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACTTACTAACTGGTAGAATTAAGGAGTAGCAGTTGGGAAATGGG  283

seq1  GAATTCAAAGAACCAAGCAACTTCTAGGCCCCATGGTCCACTTGGACCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAACCAAGCAACTTCTAGGCCCCATGGTCCACTTGGACCTG  333

seq1  CTCTAATCCCATTTGAAAAATGAGAGAGTCTGTATACCACACATCTCTTT  399
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATCCCA-TTGAAAAATGAGAGAGTCTGTATACCACACATCTCTTT  382

seq1  GAGCTGATGGTTACAACGTAATGCCTCATTCCTACTTCTCTCTTCCTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGGTTACAACGTAATGCCTCATTCCTACTTCTCTCTTCCTTGC  432

seq1  CATCAAATTCTTACCTGCTTTTCCCTAATAAGAAAGGCATCAGAGCCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATTCTTACCTGCTTTTCCCTAATAAGAAAGGCATCAGAGCCATA  482

seq1  TAACATTGCTGTAAGAATGAAAGAATGTAATGCTATTTTTAAAACAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGCTGTAAGAATGAAAGAATGTAATGCTATTTTTAAAACAAAAT  532

seq1  GAACAGTAGCTGAAGTTCTATGACAAATCAGAAATCCCTGGTTTTAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTAGCTGAAGTTCTATGACAAATCAGAAATCCCTGGTTTTAAAAT  582

seq1  TAGAACCTTGAGTTTCCAAGCTATGTCGTCACAGGTAGTACCTACAGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTTGAGTTTCCAAGCTATGTCGTCACAGGTAGTACCTACAGGAA  632

seq1  GGGCACCATCAGCCTTCTCAACACTTAAACAGCACCTATCTCCTGAAGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCATCAGCCTTCTCAACACTTAAACAGCACCTATCTCCTGAAGCA  682

seq1  AAGAGAACTAAAAAACTTGTCCCTGGAAGCGAGCTTAAGCCTCTAGAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACTAAAAAACTTGTCCCTGGAAGCGAGCTTAAGCCTCTAGAGGG  732

seq1  GCCACTTCTAAAGAGTTCCTCTTCAGCTGTAAGTTGTGCTCCTCCTTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCTAAAGAGTTCCTCTTCAGCTGTAAGTTGTGCTCCTCCTTTTG  782

seq1  ACCTCGGTCTTCATTCACAGGAGGAGAAGCTCTTCTGAGCTCAGCAACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGGTCTTCATTCACAGGAGGAGAAGCTCTTCTGAGCTCAGCAACCA  832

seq1  CCATCTCTATACCTGGGACGAAGCATCCTTGGACGAGTCACCATGCCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTATACCTGGGACGAAGCATCCTTGGACGAGTCACCATGCCACT  882

seq1  CCAGTCACCTTGAGGACAGTTTCAGAAAACCCCTCATGACAGAGATCCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACCTTGAGGACAGTTTCAGAAAACCCCTCATGACAGAGATCCAT  932

seq1  TCTTTCCTTTCAAATATCTGTTTTGTTCTATATCTCCCATGGCAGGTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTTCAAATATCTGTTTTGTTCTATATCTCCCATGGCAGGTAAA  982

seq1  GCCAGGCCTTCCTCAGCACCACTTGCTCCCTATTTGTTCTGGGGCTGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCTTCCTCAGCACCACTTGCTCCCTATTTGTTCTGGGGCTGAAA  1032

seq1  TCCAAACGTGTCTCCTATTATAGCTGAACTATTTTTGTGTACATTTCCTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACGTGTCTCCTATTATAGCTGAACTATTTTTGTGTACATTTCCTA  1082

seq1  CCAAATTCAGCAGAAAGTTGACAAAGGGCAAGGTAGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCAGCAGAAAGTTGACAAAGGGCAAGGTAGAATTC  1123

seq1: chr14_11142991_11143653
seq2: B6Ng01-089J18.g_564_1221

seq1  AAAGAATCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTACAGA  50

seq1  GCAATTGTGATCAAAACTGCATGGTATAGCAACAGACAAGTAGACCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGTGATCAAAACTGCATGGTATAGCAACAGACAAGTAGACCAATG  100

seq1  GAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGA  150

seq1  TCTTTGACAAGGGAGCAAAAACCATCCAGTGGATAAAAGACAGCA-TTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTTTGACAAGGGAGCAAAAACCATCCAGTGGATAAAAGACAGCATTTTT  200

seq1  CAACAAATGGTGCTGGCACAACTGGCAGTTACCATGTAGAAGAATGCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATGGTGCTGGCACAACTGGCAGTTACCATGTAGAAGAATGCAAA  250

seq1  TTGATCCATTC-CTCTCTCCTTGTCCTAAGGTCAAATCTAAGTGGATTAA  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCATTCTCTCTCTCCTTGTCCTAAGGTCAAATCTAAGTGGATTAA  300

seq1  GAAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTAA  350

seq1  GGAAAAGCCTCAAAGATATGGGTACAGGGGAAAAATTCCTGAATAGAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCCTCAAAGATATGGGTACAGGGGAAAAATTCCTGAATAGAACA  400

seq1  GCAATGGCTTGTGCTGTAAGATCGAGATTCGACAAATGGGACCTCATAAA  448
      || |||||||||||||||||||||||||||||| ||||||| || || ||
seq2  GCTATGGCTTGTGCTGTAAGATCGAGATTCGAC-AATGGGA-CTTAT-AA  447

seq1  ATTGCAAAGCTTCTGCAAGGCAAAAGACACTG-TCAATAAGGGCAACTTT  497
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTGCAAAGCTTCTGCAAGGCAAAAGACACTGTTCAATAAGGGCAACTTT  497

seq1  TAAAACACAGTTTGA-GTTAACTAAGATTGAAACTGGCATGTCTCC-CTC  545
        ||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  --AAACACAGTTTGAGGTTAACTAAGATTGAAACTGGCATGTCTCCTCTC  545

seq1  ATGAAGTATGGAGCATAGCAATGGCTTTCATTTCTCAGCTGAGTGAAAGG  595
      ||| |||||||| |||||||||||| |||||||||   |||  |||||||
seq2  ATGGAGTATGGACCATAGCAATGGC-TTCATTTCTTGCCTGGATGAAAGG  594

seq1  TTAAGACTGACAGACATCATGCCTCTCATACCTCTAATCTTTTCCACAAA  645
      || ||||||||  || ||||| ||||||||||||| |||||| ||| || 
seq2  TTTAGACTGACGAACTTCATG-CTCTCATACCTCT-ATCTTTGCCA-AAG  641

seq1  TATCTCAGTTGATCATCT  663
       ||||||| |||||||||
seq2  AATCTCAG-TGATCATCT  658