BAC Information

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BAC

Clone NameB6Ng01-089L18
Chromosome14 (Build37)
Map Location 34,007,614 - 34,158,247
singlet/doubletdoublet
Overlap geneEG622657, Arhgap22
Upstream geneTimm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18
Downstream geneMapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089L18.bB6Ng01-089L18.g
ACCDH902234DH902235
length1,149205
definitionDH902234|Mus musculus domesticus DNA, BAC clone: B6Ng01-089L18, 5' end.DH902235|Mus musculus domesticus DNA, BAC clone: B6Ng01-089L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,157,111 - 34,158,247)(34,007,614 - 34,007,818)
sequence
gaattccctctgatgttcacaacctcttatgaagcgcagaccaaatgtgc
ggtgtctcccgtggactctgctctgttccttggcttcgctttcaatgtcc
tggcacaaaaggagggcctttgtggctacagaggctgtctttgggtggtt
ctggtcttcccaggctactaaatggtctgtgggtcaagccagctgcaatc
atgaggttgccccaatgaggctccagagaacaatcttaacttctaacatt
acatttgctcttccgcacaggggttggcagcttggtaaaggagatcaagc
aggacatagccagccataaaagaggagagcaggagaggtaagaggcgggg
agcacgagacgtgtcagatccggatatgggcttggacctcccaaaggtag
ggatctgttcctgcctgacagatactatatatagggagagaagatgttca
caccatagctagaactaccctgctgggaggctctgggtctccatggtcag
cagggacttccccttccccccagcatggcgacaccatcaagaacactctg
aggatgacttccgatagacatcaacctataaagtcagccacgtgtctgca
gtcaacactccctcctttcctccaggactaggtctgggcaaagctcagaa
ggttctatagctggctaccccagccatctcactatcactgattgtcccat
cctgtcccagcctgctatggccatgcaacccacttcttacatgatgacta
agactttcaatcaatctaagtcaagccgggtggcagtggcgtgtgccttt
aatcccagcactcaggaggcacgggttggcggatctctgagtttgaggcc
agcctggtctacagggtgagttccaggacagccaaggctacacaggagaa
agctcctgtctttgaaaaacaaaccaacaagattcattctaaggcaagtc
ttcatcttatctcctgcttgcaatatactggggcctccatttgcattcat
gatgaagtctggacactgcctggcatgctccacagccctcgttcacccag
gtccttccgcttgtcttccttcttacattcactcagtctccttgtctgtg
gtgctgctcctcaccccttacaacttcgacagtgtgtatttttgtctgt
tcagacctcagcacaggttcacttcaggttttgaggaaaatttgtggcca
atttcactataactgtctgggctctcccacttctggagaagctgtggagg
gtgggaatccttgttctaaatgtgttgggtgtggctgtcagttcacacac
tgaaaactgatttttgcttccagacatgaaggaggggggggagcagaggg
ggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_34157111_34158247
seq2: B6Ng01-089L18.b_44_1192 (reverse)

seq1  ACAGAC-AAAATACACA-TGTCTGAAGGTCCTTAAGGGTGA-GAGCTGCA  47
      |||||| |||||||||| |||| ||| ||  | | |||||| |||| |||
seq2  ACAGACAAAAATACACACTGTC-GAA-GTTGTAAGGGGTGAGGAGCAGCA  48

seq1  GCACAG-CAAGGGGACT--GGGGATGTGAAGAGGAAGAC-AGCGGGAGGG  93
       ||||| ||||| ||||  | | |||| |  |||||||| ||||| ||| 
seq2  CCACAGACAAGGAGACTGAGTGAATGTAAGAAGGAAGACAAGCGGAAGGA  98

seq1  CCTGGGTGAGCGAGGGCTGTGGAGCATGGCAGGCAGTGTTCAGACTTCAT  143
      ||||||||| |||||||||||||||||| |||||||||| ||||||||||
seq2  CCTGGGTGAACGAGGGCTGTGGAGCATGCCAGGCAGTGTCCAGACTTCAT  148

seq1  CATGAATGC-AATGGAGCCCCAGGTATAATTGCAAGCAGGAGAT-AGATG  191
      ||||||||| ||||||| |||  |||| |||||||||||||||| |||||
seq2  CATGAATGCAAATGGAGGCCCCAGTAT-ATTGCAAGCAGGAGATAAGATG  197

seq1  -AGACTTGCCTTAGATTG-ATCTTGTTGGTTTGTTTTTC-AAGACA-GAG  237
       |||||||||||||| || |||||||||||||||||||| |||||| |||
seq2  AAGACTTGCCTTAGAATGAATCTTGTTGGTTTGTTTTTCAAAGACAGGAG  247

seq1  C-TTCT-CTGTGTAGCCTTGGCTGTCCTGGAACTCACCCTGTAGACCAGG  285
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTGTGTAGCCTTGGCTGTCCTGGAACTCACCCTGTAGACCAGG  297

seq1  CTGGCCTCAAACTCAGAGATCCGCCAACCCGTGCCTCCTGAGTGCTGGGA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCAAACTCAGAGATCCGCCAACCCGTGCCTCCTGAGTGCTGGGA  347

seq1  TTAAAGGCACACGCCACTGCCACCCGGCTTGACTTAGATTGATTGAAAGT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCACACGCCACTGCCACCCGGCTTGACTTAGATTGATTGAAAGT  397

seq1  CTTAGTCATCATGTAAGAAGTGGGTTGCATGGCCATAGCAGGCTGGGACA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCATCATGTAAGAAGTGGGTTGCATGGCCATAGCAGGCTGGGACA  447

seq1  GGATGGGACAATCAGTGATAGTGAGATGGCTGGGGTAGCCAGCTATAGAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGACAATCAGTGATAGTGAGATGGCTGGGGTAGCCAGCTATAGAA  497

seq1  CCTTCTGAGCTTTGCCCAGACCTAGTCCTGGAGGAAAGGAGGGAGTGTTG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAGCTTTGCCCAGACCTAGTCCTGGAGGAAAGGAGGGAGTGTTG  547

seq1  ACTGCAGACACGTGGCTGACTTTATAGGTTGATGTCTATCGGAAGTCATC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGACACGTGGCTGACTTTATAGGTTGATGTCTATCGGAAGTCATC  597

seq1  CTCAGAGTGTTCTTGATGGTGTCGCCATGCTGGGGGGAAGGGGAAGTCCC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTGTTCTTGATGGTGTCGCCATGCTGGGGGGAAGGGGAAGTCCC  647

seq1  TGCTGACCATGGAGACCCAGAGCCTCCCAGCAGGGTAGTTCTAGCTATGG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACCATGGAGACCCAGAGCCTCCCAGCAGGGTAGTTCTAGCTATGG  697

seq1  TGTGAACATCTTCTCTCCCTATATATAGTATCTGTCAGGCAGGAACAGAT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACATCTTCTCTCCCTATATATAGTATCTGTCAGGCAGGAACAGAT  747

seq1  CCCTACCTTTGGGAGGTCCAAGCCCATATCCGGATCTGACACGTCTCGTG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCTTTGGGAGGTCCAAGCCCATATCCGGATCTGACACGTCTCGTG  797

seq1  CTCCCCGCCTCTTACCTCTCCTGCTCTCCTCTTTTATGGCTGGCTATGTC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCGCCTCTTACCTCTCCTGCTCTCCTCTTTTATGGCTGGCTATGTC  847

seq1  CTGCTTGATCTCCTTTACCAAGCTGCCAACCCCTGTGCGGAAGAGCAAAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGATCTCCTTTACCAAGCTGCCAACCCCTGTGCGGAAGAGCAAAT  897

seq1  GTAATGTTAGAAGTTAAGATTGTTCTCTGGAGCCTCATTGGGGCAACCTC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTAGAAGTTAAGATTGTTCTCTGGAGCCTCATTGGGGCAACCTC  947

seq1  ATGATTGCAGCTGGCTTGACCCACAGACCATTTAGTAGCCTGGGAAGACC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGCAGCTGGCTTGACCCACAGACCATTTAGTAGCCTGGGAAGACC  997

seq1  AGAACCACCCAAAGACAGCCTCTGTAGCCACAAAGGCCCTCCTTTTGTGC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACCCAAAGACAGCCTCTGTAGCCACAAAGGCCCTCCTTTTGTGC  1047

seq1  CAGGACATTGAAAGCGAAGCCAAGGAACAGAGCAGAGTCCACGGGAGACA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATTGAAAGCGAAGCCAAGGAACAGAGCAGAGTCCACGGGAGACA  1097

seq1  CCGCACATTTGGTCTGCGCTTCATAAGAGGTTGTGAACATCAGAGGGAAT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACATTTGGTCTGCGCTTCATAAGAGGTTGTGAACATCAGAGGGAAT  1147

seq1  TC  1137
      ||
seq2  TC  1149

seq1: chr14_34007614_34007818
seq2: B6Ng01-089L18.g_77_281

seq1  TCAGACCTCAGCACAGGTTCACTTCAGGTTTTGAGGAAAATTTGTGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTCAGCACAGGTTCACTTCAGGTTTTGAGGAAAATTTGTGGCCA  50

seq1  ATTTCACTATAACTGTCTGGGCTCTCCCACTTCTGGAGAAGCTGTGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTATAACTGTCTGGGCTCTCCCACTTCTGGAGAAGCTGTGGAGG  100

seq1  GTGGGAATCCTTGTTCTAAATGTGTTGGGTGTGGCTGTCAGTTCACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAATCCTTGTTCTAAATGTGTTGGGTGTGGCTGTCAGTTCACACAC  150

seq1  TGAAAACTGATTTTTGCTTCCAGACATGAAGGAGGGGGGGGAGCAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTGATTTTTGCTTCCAGACATGAAGGAGGGGGGGGAGCAGAGGG  200

seq1  GGAGG  205
      |||||
seq2  GGAGG  205