BAC Information

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BAC

Clone NameB6Ng01-089M11
Chromosome14 (Build37)
Map Location 48,561,076 - 48,692,806
singlet/doubletdoublet
Overlap gene4930447J18Rik
Upstream geneSamd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
Downstream geneMap1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089M11.bB6Ng01-089M11.g
ACCDH902268DH902269
length1,189149
definitionDH902268|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M11, 5' end.DH902269|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,561,076 - 48,562,294)(48,692,658 - 48,692,806)
sequence
gaattcaacaggaaatagtaaagcccacagttcagcaggcataggacaat
cagagacagtctctaacctgaaccagacacagagcacttcagaggactcc
acactgttgcaagtggatagagaagaacttaagcctctcctctacctgac
cacagctagcagacaaagctgtcagctggatcttgctatacttgtctgag
agccgagagctttggacccatcctaggctttgctctagtatttgatgaac
acatgcacacgtttagctctctaataaaagccttaatctaataaaagtga
aaatcagggtcttaaatgaccagggactccacatggcaaaccttatcctc
cgctcaggtatcctaatagcacgtcatcgttctaagggcataaaatggtg
aaggaggttttggtggcagcattgtgggcatggttggatgctgggaggga
ctgaagatggatcggcaagctagacgggccatttacagaccacactgtgg
ttttgctgtggcacagcacagagactacacactacagagtcatcccaaac
ttggtgtcgagtccggaggatgtcaataccttgtattttcacatgcactg
tattattttcttactgaaagatatttcaataagaaaggtaagaacattaa
attaaaagtgaaggctgtccaagtttgaacacatgtttccaaagggaaca
ctttcaatgtaatagtcatcattctctttctaaggcagctagtgatgtga
attacatagtgcatatggcttgagcttttcacatacaaatgcaatcatgc
actaccactcgagatgttttgtttactatattgataattcctcctctgcc
catacaagtggttttacctcctcttgaaagctgccttgctttctttctcg
agcacagctcctaatgtatttgacaggttccctcctaatggttctgttgt
tagcccattttttccttttgctattaaaaaaccatgctgcaaaaccattt
ttatctgtggatgtgtacacttgttgatatttcccaagacattcttgtag
tgcatgctgggttgtgatatgaataattaataagctatgtgctgaattgt
cgaaaagaatggtgtgtccaatttggtttccacagaatggatggcaactt
tccacatctttgaccaatttagtttatcacgtgtatgat
tcatggaacttgcaagggaaggagagctctgtaaaccaccccagttggat
tcggtgtttgttccatagtttatccttgggttttgtgctttgctttttgt
ttgcttgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48561076_48562294
seq2: B6Ng01-089M11.b_48_1236

seq1  GAATTCAACAGGAAATAGTAAAGCCCACAGCTCAGCAGGCATAGGACAAT  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCAACAGGAAATAGTAAAGCCCACAGTTCAGCAGGCATAGGACAAT  50

seq1  CAGAGACAGTCTCTAACCTGAACCAGACACAGAGCACTTCAGAGGACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGTCTCTAACCTGAACCAGACACAGAGCACTTCAGAGGACTCC  100

seq1  ACACTGTTGCAAGTGGATAGAGAAGAACTTAAGCCTCTCCTCTACCTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTGCAAGTGGATAGAGAAGAACTTAAGCCTCTCCTCTACCTGAC  150

seq1  CACAGCTAGCAGACAAAGCTGTCAGCTGGATCTTGCTATACTTGTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTAGCAGACAAAGCTGTCAGCTGGATCTTGCTATACTTGTCTGAG  200

seq1  AGCCGAGAGCTTTGGACCCATCCTAGGCTTTGCTCTAGTATTTGATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAGAGCTTTGGACCCATCCTAGGCTTTGCTCTAGTATTTGATGAAC  250

seq1  ACATGCACACGTTTAGCTCTCTAATAAAAGCCTTAATCTAATAAAAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACACGTTTAGCTCTCTAATAAAAGCCTTAATCTAATAAAAGTGA  300

seq1  AAATCAGGGTCTTAAATGACCAGGGACTCCACATGGCAAACCTTATCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGGTCTTAAATGACCAGGGACTCCACATGGCAAACCTTATCCTC  350

seq1  CGCTCAGGTATCCTAATAGCACGTCATCGTTCTAAGGGCATAAAATGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCAGGTATCCTAATAGCACGTCATCGTTCTAAGGGCATAAAATGGTG  400

seq1  AAGGAGGTTTTGGTGGCAGCATTGTGGGCATGGTTGGATGCTGGGAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGTTTTGGTGGCAGCATTGTGGGCATGGTTGGATGCTGGGAGGGA  450

seq1  CTGAAGATGGATCGGCAAGCTAGACGGGCCATTTACAGACCACACTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATGGATCGGCAAGCTAGACGGGCCATTTACAGACCACACTGTGG  500

seq1  TTTTGCTGTGGCACAGCACAGAGACTACACACTACAGAGTCATCCCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTGGCACAGCACAGAGACTACACACTACAGAGTCATCCCAAAC  550

seq1  TTGGTGTCGAGTCCGGAGGATGTCAATACCTTGTATTTTCACATGCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTCGAGTCCGGAGGATGTCAATACCTTGTATTTTCACATGCACTG  600

seq1  TATTATTTTCTTACTG-AAGATATTTCAATAAGAAAGGTAAGAACATTAA  649
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATTATTTTCTTACTGAAAGATATTTCAATAAGAAAGGTAAGAACATTAA  650

seq1  ATTAAAAGTGAAGGCTGTCCAAGTTTGAACACATGTTTCCAAAGGGAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGTGAAGGCTGTCCAAGTTTGAACACATGTTTCCAAAGGGAACA  700

seq1  CTTTCAATGTAATAGTCATCATTCTCTTTCTAAGGCAGCTAGTGATGTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATGTAATAGTCATCATTCTCTTTCTAAGGCAGCTAGTGATGTGA  750

seq1  ATTACATAGTGCATATGGCTTGAGCTTTTTCACATACAAATGCAATCATG  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTACATAGTGCATATGGCTTGAGC-TTTTCACATACAAATGCAATCATG  799

seq1  CACTACCACTCGAGATGTTTTGTTTACTATATTGATAATTCCTCCTCTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCACTCGAGATGTTTTGTTTACTATATTGATAATTCCTCCTCTGC  849

seq1  CCATACAAGTGGTTTTACCTCCTCTTGAAAGCTGCCTTGC-TTCCTTCCC  898
      |||||||||||||||||||||||||||||||||||||||| ||| ||| |
seq2  CCATACAAGTGGTTTTACCTCCTCTTGAAAGCTGCCTTGCTTTCTTTCTC  899

seq1  GAGCACAGCTCCTAATGTATTTGACAGGTTCCCTCCTAATGGTTCTGTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGCTCCTAATGTATTTGACAGGTTCCCTCCTAATGGTTCTGTTG  949

seq1  TTAAGCCCATTTTTTCCTTTTGCTATTAAAAAAACCATGCTGCAAAAACC  998
      || |||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TT-AGCCCATTTTTTCCTTTTGCTATT-AAAAAACCATGCTGC-AAAACC  996

seq1  ATATTTATCTGTGGATGTGTACACTTGTTGAATATTTCCACAAGGAACAT  1048
      || ||||||||||||||||||||||||||| |||||||| ||||  ||||
seq2  ATTTTTATCTGTGGATGTGTACACTTGTTG-ATATTTCC-CAAG--ACAT  1042

seq1  TCTTGGTAGTGGCAATGCTGGGTTGGTGATTATGAATAATTAAAATTAAG  1098
      |||| ||||||   |||||||||| |||| |||||||||||||   ||||
seq2  TCTT-GTAGTG--CATGCTGGGTT-GTGA-TATGAATAATTAA---TAAG  1084

seq1  CTTATGTTGCTGAATTGTTCGAAAAAGAATGTTG-GTCCAATTTGTGTTC  1147
      | |||| |||||||||| ||| ||||||||| || |||||||||| ||| 
seq2  C-TATG-TGCTGAATTG-TCG-AAAAGAATGGTGTGTCCAATTTG-GTTT  1129

seq1  CTACGAGAATGAATGGGCAATCTTTCCCCACATCTTTGCACCCATTTTAG  1197
      | || |||||| || ||||| ||||  |||||||||||   ||| |||||
seq2  CCAC-AGAATGGAT-GGCAA-CTTT--CCACATCTTTG--ACCAATTTAG  1172

seq1  TTATTTAGTCACGTTGTATGAT  1219
         |||| ||||| ||||||||
seq2  ---TTTA-TCACG-TGTATGAT  1189

seq1: chr14_48692658_48692806
seq2: B6Ng01-089M11.g_75_223 (reverse)

seq1  CACACACACACACACACACACACACACACACACACAAACAAACAAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACAAACAAACAAGCAAA  50

seq1  CAAAAAGCAAAGCACAAAACCCAAGGATAAACTATGGAACAAACACCGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGCAAAGCACAAAACCCAAGGATAAACTATGGAACAAACACCGAA  100

seq1  TCCAACTGGGGTGGTTTACAGAGCTCTCCTTCCCTTGCAAGTTCCATGA  149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGGGGTGGTTTACAGAGCTCTCCTTCCCTTGCAAGTTCCATGA  149