BAC Information

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BAC

Clone NameB6Ng01-090A20
Chromosome14 (Build37)
Map Location 99,691,380 - 99,794,285
singlet/doubletdoublet
Overlap geneKlf5, LOC100043400, LOC100043789
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397
Downstream geneLOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090A20.bB6Ng01-090A20.g
ACCDH902458DH902459
length1,1551,056
definitionDH902458|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A20, 5' end.DH902459|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,691,380 - 99,692,548)(99,793,217 - 99,794,285)
sequence
gaattctttaaaaaaaaaaaaatttttttttttttttaaattagatactg
ggaaagagaacagcgtcttagaagactgtgagtatatgccattaatgatg
cgactcttttagaatttaatacatctctttaaagattaggtccattctac
ctagctctagcagcctaagcattttgtcaaaacactgatgggggagggac
agagacccaggctgccttcaaactgaccatataaggatataaggagttgc
gggctatctgagctatctttgagctgtgaaggaactaacctggaactaac
tcctcacctgtgggcctctgctcccaagtgctgagattacgtgtgctcac
ccacacatttcttttctctctctctctctctttttttggtttttggtttt
tcgagacagggtttctctgtgtagccctggctgtcctggaactcactctg
tagaccaggctggcctcgaacctagaaatctgcctgcttctgctccccaa
gtgctgggattaaaggcctgcaccatcatgcccagcatgatagatatttc
taattgtcaaaaatgtagctgtgtgggctggagagatggctcagtagtta
agagcaccgactgctcttctcaaggtcccgagttcaattcccatcaacca
cgtggtggctcacaaccatctgtaatggcatccgaatacctcttctggtg
tgtctgaagagagcaatggtgtattcatatacattaaataaataaataga
taggtaaatctttttttaaaaatgtagctgtgtggtagtagcacacgttg
tatttaatcccagcactgtgtggcagagacaggcaaatctctgagttcaa
ggtcagcctgttggccaaagctatacagagaaaccagtgtgatttgtttt
cattttgttgctttgaagacaggatctcatgcagaccgagctggatttga
attcactacatagccaggatgtccctgaactcctgatcctcctgtctcca
cttctagtgctaggatacaaatctggtgtcagctttgagtgtgtggggaa
cacaaagtgcctgcaaccagccactaatgaagcttatccctagccttcac
tctacttaggacccccccccctattccctcaggaaaggaagaaaggaaga
aaaaa
gaattctttgtcttcaggtttaagattggaagagaaaaggtaaaaacatg
tgaatgaagtcttatttccaataccagcaagactgtggctccttttgaat
ggagtaggtgaaagccttgttagttggatcaagagcaaagatgcttgctg
ctaagccagaggacctgagttcaatccccatgacccacatgatgatggaa
aaagagaatcctctctgatttccacgtgtgtgcagtggcaagtacacaca
cacagacacacacacatacacacacacacacaatgtaattaaaagaaaaa
aaggcacatttttttaaatataaagagtaggttatgaggatgaataatgg
gtgtttctgtaaatgggaagcagtcagctctgacattaacaaaagtgatg
agtcacctttgcgcagcatcagaaagaagccagaggagcattcagacatt
ttctacctaggtaagaacagcagctctttggcttgactgtgtccacggag
aacatcaaagtattctgcacccttaacttctcactgaaaatgcaaactaa
atccaagcaggtacccctagttgcctgtcattatgacataacacttaggg
gagcagggatagaaaaggtgacttcagacacaagctatcctaatagtcaa
atgtcactcaactagaattctacatcagctaattccttcttgtttgagtt
agacaagtcatgggctttggccatgccaaggtcttgttgtttcaccgaaa
cccatcaagggttaaatgggatgtctgtgaagaataacaacaggcacggt
gtgtgaatggtgtgtgaatggtgcccagaaaatgagaggagagcagccac
tcccctcatgtgcacttgctctgcctttcaacgtgcatgcctcctgtctt
tggatacatgtgctcagttctcagaacccagtccctttgagctgctccat
ctcatggtcaccttggcttcctttctggtcatctcgtctcatcttgggag
cgaagatgcatttaaatgatgtgagcactgtccgcacacctctgagtctc
agcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99691380_99692548
seq2: B6Ng01-090A20.b_44_1198

seq1  GAATTCTTTAAAAAAAAAAAAATTTTTTTTTTTTTTTTAAATTAGATACT  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAATTCTTTAAAAAAAAAAAAA-TTTTTTTTTTTTTTTAAATTAGATACT  49

seq1  GGGAAAGAGAACAGCGTCTTAGAAGACTGTGAGTATATGCCATTAATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAGAACAGCGTCTTAGAAGACTGTGAGTATATGCCATTAATGAT  99

seq1  GCGACTCTTTTAGAATTTAATACATCTCTTTAAAGATTAGGTCCATTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTCTTTTAGAATTTAATACATCTCTTTAAAGATTAGGTCCATTCTA  149

seq1  CCTAGCTCTAGCAGCCTAAGCATTTTGTCAAAACACTGATGGGGGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCTAGCAGCCTAAGCATTTTGTCAAAACACTGATGGGGGAGGGA  199

seq1  CAGAGACCCAGGCTGCCTTCAAACTGACCATATAAGGATATAAGGAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCCAGGCTGCCTTCAAACTGACCATATAAGGATATAAGGAGTTG  249

seq1  CGGGCTATCTGAGCTATCTTTGAGCTGTGAAGGAACTAACCTGGAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTATCTGAGCTATCTTTGAGCTGTGAAGGAACTAACCTGGAACTAA  299

seq1  CTCCTCACCTGTGGGCCTCTGCTCCCAAGTGCTGAGATTACGTGTGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACCTGTGGGCCTCTGCTCCCAAGTGCTGAGATTACGTGTGCTCA  349

seq1  CCCACACATTTCTTTTCTCTCTCTCTCTCTCTTTTTTTGGTTTTTGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACATTTCTTTTCTCTCTCTCTCTCTCTTTTTTTGGTTTTTGGTTT  399

seq1  TTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCT  449

seq1  GTAGACCAGGCTGGCCTCGAACCTAGAAATCTGCCTGCTTCTGCTCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTCGAACCTAGAAATCTGCCTGCTTCTGCTCCCCA  499

seq1  AGTGCTGGGATTAAAGGCCTGCACCATCATGCCCAGCATGATAGATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGCCTGCACCATCATGCCCAGCATGATAGATATTT  549

seq1  CTAATTGTCAAAAATGTAGCTGTGTGGGCTGGAGAGATGGCTCAGTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTCAAAAATGTAGCTGTGTGGGCTGGAGAGATGGCTCAGTAGTT  599

seq1  AAGAGCACCGACTGCTCTTCTCAAGGTCCCGAGTTCAATTCCCATCAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACCGACTGCTCTTCTCAAGGTCCCGAGTTCAATTCCCATCAACC  649

seq1  ACGTGGTGGCTCACAACCATCTGTAATGGCATCCGAATACCTCTTCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGTGGCTCACAACCATCTGTAATGGCATCCGAATACCTCTTCTGGT  699

seq1  GTGTCTGAAGAGAGCAATGGTGTATTCATATACATTAAATAAATAAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGAAGAGAGCAATGGTGTATTCATATACATTAAATAAATAAATAG  749

seq1  ATAGGTAAATCTTTTTTTAAAAATGTAGCTGTGTGGTAGTAGCACACGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAAATCTTTTTTTAAAAATGTAGCTGTGTGGTAGTAGCACACGTT  799

seq1  GTATTTAATCCCAGCACTGTGTGGCAGAGACAGGCAAATCTCTGAGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAATCCCAGCACTGTGTGGCAGAGACAGGCAAATCTCTGAGTTCA  849

seq1  AGGTCAGCCTGTTGGCCAAAGCTATACAGAGAAACCAGTGTGATTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCCTGTTGGCCAAAGCTATACAGAGAAACCAGTGTGATTTGTTT  899

seq1  TCATTTTGTTGCTTTGAAGACAGGATCTCATGCAGACCGAGCTGGATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTGCTTTGAAGACAGGATCTCATGCAGACCGAGCTGGATTTG  949

seq1  AATTCACTACATAGCCAAGGATGTCCCTGAACTCCTGATCCTCCTGTCTC  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATTCACTACATAGCC-AGGATGTCCCTGAACTCCTGATCCTCCTGTCTC  998

seq1  CACTTCCTAAGTGCTAGGATTACAAATCT-GTGTCAGCTTTGAGTGGTGT  1049
      ||||||   |||||||||| ||||||||| ||||||||||||||| ||| 
seq2  CACTTC--TAGTGCTAGGA-TACAAATCTGGTGTCAGCTTTGAGT-GTG-  1043

seq1  TGGGGAACACAAAGTGCTGGCAAACAAGCCAACTAAATTGAGCTATATCC  1099
      |||||||||||||||||  || ||| |||| ||| |||  |||| |||||
seq2  TGGGGAACACAAAGTGCCTGC-AACCAGCC-ACT-AATGAAGCT-TATCC  1089

seq1  CTAGCCTTCA-TCTACTTAGGACCCCCACCCCTATTCCCTCCAAAGAAAA  1148
      |||||||||| |||||||||||||||| |||||||||||||   || |||
seq2  CTAGCCTTCACTCTACTTAGGACCCCCCCCCCTATTCCCTC---AGGAAA  1136

seq1  GAAAGAAAGAGGAAGAAAAAA  1169
      | |||||  ||||||||||||
seq2  GGAAGAA--AGGAAGAAAAAA  1155

seq1: chr14_99793217_99794285
seq2: B6Ng01-090A20.g_66_1121 (reverse)

seq1  TTTGCTGAGAACCTCAGA-GTGTGCGGACAGGTTGCTTCACATCATTTTA  49
      ||||||||||  |||||| ||||||||||||  ||| |||||||| ||||
seq2  TTTGCTGAGA--CTCAGAGGTGTGCGGACAG--TGC-TCACATCA-TTTA  44

seq1  AATGCATCCTCGCTCCCAAGATGAGACGAGATGAACCAGGAAAGGGAAGC  99
      |||||||| |||||||||||||||||||||||| |||||  || ||||||
seq2  AATGCATCTTCGCTCCCAAGATGAGACGAGATG-ACCAG--AAAGGAAGC  91

seq1  CAAGGTGACCATGAGATGGAGCAAGCTCAAAGGGACTGGGTTTCTGGAGA  149
      |||||||||||||||||||||| ||||||||||||||||| |||| ||||
seq2  CAAGGTGACCATGAGATGGAGC-AGCTCAAAGGGACTGGG-TTCT-GAGA  138

seq1  ACCTGAGCACATGTTATCCAAAGACAGGAGGCATGCACGTTGAAAGGCAG  199
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  A-CTGAGCACATG-TATCCAAAGACAGGAGGCATGCACGTTGAAAGGCAG  186

seq1  AGCAAGTGCACATGAGGGGAGTGGCTGCTCTCCTCTCATTTTCTGGGCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGCACATGAGGGGAGTGGCTGCTCTCCTCTCATTTTCTGGGCAC  236

seq1  CATTCACACACCATTCACACACCGTGCCTGTTGTTATTCTTCACAGACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACACACCATTCACACACCGTGCCTGTTGTTATTCTTCACAGACAT  286

seq1  CCCATTTAACCCTTGATGGGTTTCGGTGAAACAACAAGACCTTGGCATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTAACCCTTGATGGGTTTCGGTGAAACAACAAGACCTTGGCATGG  336

seq1  CCAAAGCCCATGACTTGTCTAACTCAAACAAGAAGGAATTAGCTGATGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCCATGACTTGTCTAACTCAAACAAGAAGGAATTAGCTGATGTA  386

seq1  GAATTCTAGTTGAGTGACATTTGACTATTAGGATAGCTTGTGTCTGAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTGAGTGACATTTGACTATTAGGATAGCTTGTGTCTGAAGT  436

seq1  CACCTTTTCTATCCCTGCTCCCCTAAGTGTTATGTCATAATGACAGGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTCTATCCCTGCTCCCCTAAGTGTTATGTCATAATGACAGGCAA  486

seq1  CTAGGGGTACCTGCTTGGATTTAGTTTGCATTTTCAGTGAGAAGTTAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGTACCTGCTTGGATTTAGTTTGCATTTTCAGTGAGAAGTTAAGG  536

seq1  GTGCAGAATACTTTGATGTTCTCCGTGGACACAGTCAAGCCAAAGAGCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAATACTTTGATGTTCTCCGTGGACACAGTCAAGCCAAAGAGCTG  586

seq1  CTGTTCTTACCTAGGTAGAAAATGTCTGAATGCTCCTCTGGCTTCTTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTACCTAGGTAGAAAATGTCTGAATGCTCCTCTGGCTTCTTTCT  636

seq1  GATGCTGCGCAAAGGTGACTCATCACTTTTGTTAATGTCAGAGCTGACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGCGCAAAGGTGACTCATCACTTTTGTTAATGTCAGAGCTGACTG  686

seq1  CTTCCCATTTACAGAAACACCCATTATTCATCCTCATAACCTACTCTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATTTACAGAAACACCCATTATTCATCCTCATAACCTACTCTTTA  736

seq1  TATTTAAAAAAATGTGCCTTTTTTTCTTTTAATTACATTGTGTGTGTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAAAATGTGCCTTTTTTTCTTTTAATTACATTGTGTGTGTGTG  786

seq1  TGTATGTGTGTGTGTCTGTGTGTGTGTACTTGCCACTGCACACACGTGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTGTGTGTCTGTGTGTGTGTACTTGCCACTGCACACACGTGGA  836

seq1  AATCAGAGAGGATTCTCTTTTTCCATCATCATGTGGGTCATGGGGATTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGAGGATTCTCTTTTTCCATCATCATGTGGGTCATGGGGATTGA  886

seq1  ACTCAGGTCCTCTGGCTTAGCAGCAAGCATCTTTGCTCTTGATCCAACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTCCTCTGGCTTAGCAGCAAGCATCTTTGCTCTTGATCCAACTA  936

seq1  ACAAGGCTTTCACCTACTCCATTCAAAAGGAGCCACAGTCTTGCTGGTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTTTCACCTACTCCATTCAAAAGGAGCCACAGTCTTGCTGGTAT  986

seq1  TGGAAATAAGACTTCATTCACATGTTTTTACCTTTTCTCTTCCAATCTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAAGACTTCATTCACATGTTTTTACCTTTTCTCTTCCAATCTTA  1036

seq1  AACCTGAAGACAAAGAATTC  1069
      ||||||||||||||||||||
seq2  AACCTGAAGACAAAGAATTC  1056