BAC Information

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BAC

Clone NameB6Ng01-090H21
Chromosome14 (Build37)
Map Location 29,730,173 - 29,903,126
singlet/doubletdoublet
Overlap geneCacna2d3, Lrtm1
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218
Downstream genePpia-ps15, EG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090H21.bB6Ng01-090H21.g
ACCDH902777DH902778
length1,0381,072
definitionDH902777|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H21, 5' end.DH902778|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,902,080 - 29,903,126)(29,730,173 - 29,731,269)
sequence
gaattctccagcttagcttctgacctaaggaataaaggactgggagaacc
cgcattttaccaggttgaatgatgtttcaatttcaacttctaacactcag
gcccacagcttcttggtcctgggactaggtgggcacttggatactgagat
agtagatgaactacgggagtcaattccatgttttgaatatgcagtgtgct
ttaatattacccttggatgctagaaatggcaagcaaacggaaccagcaac
aaccatgcaaccactacccaagatgtcagaagccttctaatcacaagtgc
cctgcccaaactgacttatgaagctctagtagcatcctgcctgttagcat
gtatcagagaggccacctgaatgtgaggatctactatataaggttacatt
ttaaagaaaaattaattaaatatttacagaggaaagaagtctgatccttg
gactaagaaacgtgtctgccagaaggtatatttagggtagtcttcacaga
agtcagacatgacaatggacctgatttgtcatcatctcattcctccagtt
gtgaagctgtgcgtgcttcccttccctttgtcccgtgctttccttttgtc
cccaatgctgatctgatggatcacagagattgttcctcgttctagtgtag
atgcagttggggccagactggctgtgcccaagctaaaaccacagaccctg
tctttctctgtggccttcttgttccagtcccctgtagatgcaacccaccc
ctctttcatgcacggtgagagccaaggtctcctgacatctcagcttcagg
gaaccacatggctgctgtaggttctgtcatcctacccaacagatttacaa
gggatgctttgtggtgtcccatcctctgccagcttacttactctgtcctt
actccctgctgggtgacagacatatagaagtaggaccggacaggatattt
tctctaaagtattacactttaaggaaagaaagcaaagaaaaagagaggga
gagaaaggaaagaggaagagaggaggaggggagggagg
gaattcagacttccatttactttggaggcacctctactccccagtctctt
gtatgtgatgcccaatatttgaatacattattttttatccaaattacaca
cagcatttagtcttcaatgacaacaatattcatgatgggcttaacaaaac
tgaacaaatattaaaaccggaagacacaaccctggaaggcttagttttct
ataatccaagaaagattttatttagaagagagaaaaatatttcaaaatga
agcaaaaaagataaacccttttaatgtaaaattatatattggttaaatgg
aaaaaagaagtctgggcaagctgtttctgaaatttaaggtggcaagggag
ccttcacttcagctcgtcagggttatggacaatgtggctagagatgaaac
tgaagagtcaacacttcttagtgcaaagattagggataatagcctattac
agaaaatgggcaggacttaaaagcccatgagtcttccagacacccacagt
acagagcaacggaagaatactgcatgcatacccatattctgccaatggaa
agtggacaggcaatattgaaactgacactagaatgccatttctttattgt
gactataagctaagaattaagacttgggtctaaaacttctatgagattct
gatttctccacatctgaccttttgtctttccccagcactaataatatttg
gcatatgtgaaaggagtcattttgttgagaaggaactaaaaacaatatag
agctatcatctaatatctttttaaacccaaaagtatgtgtttatttcagc
aagctttaacctggtatagtaccaaaataataagacagataaaatgattt
agtaccaagtaagagttacaaatttgaacactgaagacaggcctttcttt
gaattagaattagtcactcacataaggttataatcatgagtcagctgtca
caggggaaaaaaggagagatttaaagagagatatgcatactgagattgta
gatacagacgaaaccatcaatgataaaaaatgtaagtgacaggactttaa
gtagtgctatctacagcagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29902080_29903126
seq2: B6Ng01-090H21.b_48_1085 (reverse)

seq1  CCTCCCTCCCTCCCTTCCTCTCTTCCTTCTTTCCTTTCTTCTTCCCTCTT  50
      |||||||||| | | ||||||||||| ||||||||||||   |||||| |
seq2  CCTCCCTCCC-CTCCTCCTCTCTTCC-TCTTTCCTTTCT--CTCCCTC-T  45

seq1  CTATTTTCTTTTGCTTTCTTTCCTTTAAGTGTAATACTTTAAGAG-AAAT  99
      || ||||| |||||||||||||||| |||||||||||||| |||| ||||
seq2  CT-TTTTC-TTTGCTTTCTTTCCTTAAAGTGTAATACTTT-AGAGAAAAT  92

seq1  ATCCTGTCCGGTCCTACTTCTATATGTCTTGTCACCCCAGCAGGGAGTAA  149
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  ATCCTGTCCGGTCCTACTTCTATATGTC-TGTCA-CCCAGCAGGGAGTAA  140

seq1  GGACAGAGTAAGTAAGCTGGCAGAGGATGGGACACCACAAAGCATCCCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGTAAGTAAGCTGGCAGAGGATGGGACACCACAAAGCATCCCTT  190

seq1  GTAAATCTGTTGGGTAGGATGACAGAACCTACAGCAGCCATGTGGTTCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCTGTTGGGTAGGATGACAGAACCTACAGCAGCCATGTGGTTCCC  240

seq1  TGAAGCTGAGATGTCAGGAGACCTTGGCTCTCACCGTGCATGAAAGAGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGAGATGTCAGGAGACCTTGGCTCTCACCGTGCATGAAAGAGGG  290

seq1  GTGGGTTGCATCTACAGGGGACTGGAACAAGAAGGCCACAGAGAAAGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGCATCTACAGGGGACTGGAACAAGAAGGCCACAGAGAAAGACA  340

seq1  GGGTCTGTGGTTTTAGCTTGGGCACAGCCAGTCTGGCCCCAACTGCATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTGGTTTTAGCTTGGGCACAGCCAGTCTGGCCCCAACTGCATCT  390

seq1  ACACTAGAACGAGGAACAATCTCTGTGATCCATCAGATCAGCATTGGGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGAACGAGGAACAATCTCTGTGATCCATCAGATCAGCATTGGGGA  440

seq1  CAAAAGGAAAGCACGGGACAAAGGGAAGGGAAGCACGCACAGCTTCACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAAAGCACGGGACAAAGGGAAGGGAAGCACGCACAGCTTCACAA  490

seq1  CTGGAGGAATGAGATGATGACAAATCAGGTCCATTGTCATGTCTGACTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAATGAGATGATGACAAATCAGGTCCATTGTCATGTCTGACTTC  540

seq1  TGTGAAGACTACCCTAAATATACCTTCTGGCAGACACGTTTCTTAGTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGACTACCCTAAATATACCTTCTGGCAGACACGTTTCTTAGTCCA  590

seq1  AGGATCAGACTTCTTTCCTCTGTAAATATTTAATTAATTTTTCTTTAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGACTTCTTTCCTCTGTAAATATTTAATTAATTTTTCTTTAAAA  640

seq1  TGTAACCTTATATAGTAGATCCTCACATTCAGGTGGCCTCTCTGATACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTTATATAGTAGATCCTCACATTCAGGTGGCCTCTCTGATACAT  690

seq1  GCTAACAGGCAGGATGCTACTAGAGCTTCATAAGTCAGTTTGGGCAGGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGGCAGGATGCTACTAGAGCTTCATAAGTCAGTTTGGGCAGGGC  740

seq1  ACTTGTGATTAGAAGGCTTCTGACATCTTGGGTAGTGGTTGCATGGTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGATTAGAAGGCTTCTGACATCTTGGGTAGTGGTTGCATGGTTGT  790

seq1  TGCTGGTTCCGTTTGCTTGCCATTTCTAGCATCCAAGGGTAATATTAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTTCCGTTTGCTTGCCATTTCTAGCATCCAAGGGTAATATTAAAG  840

seq1  CACACTGCATATTCAAAACATGGAATTGACTCCCGTAGTTCATCTACTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCATATTCAAAACATGGAATTGACTCCCGTAGTTCATCTACTAT  890

seq1  CTCAGTATCCAAGTGCCCACCTAGTCCCAGGACCAAGAAGCTGTGGGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATCCAAGTGCCCACCTAGTCCCAGGACCAAGAAGCTGTGGGCCT  940

seq1  GAGTGTTAGAAGTTGAAATTGAAACATCATTCAACCTGGTAAAATGCGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTAGAAGTTGAAATTGAAACATCATTCAACCTGGTAAAATGCGGG  990

seq1  TTCTCCCAGTCCTTTATTCCTTAGGTCAGAAGCTAAGCTGGAGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAGTCCTTTATTCCTTAGGTCAGAAGCTAAGCTGGAGAATTC  1038

seq1: chr14_29730173_29731269
seq2: B6Ng01-090H21.g_69_1140

seq1  GAATTCAGACTTCCATTTACTTTGGAGGCACCTCTACTCCCCAGTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTTCCATTTACTTTGGAGGCACCTCTACTCCCCAGTCTCTT  50

seq1  GTATGTGATGCCCAATATTTGAATACATTATTTTTTATCCAAATTACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGATGCCCAATATTTGAATACATTATTTTTTATCCAAATTACACA  100

seq1  CAGCATTTAGTCTTCAATGACAACAATATTCATGATGGGCTTAACAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTAGTCTTCAATGACAACAATATTCATGATGGGCTTAACAAAAC  150

seq1  TGAACAAATATTAAAACCGGAAGACACAACCCTGGAAGGCTTAGTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAATATTAAAACCGGAAGACACAACCCTGGAAGGCTTAGTTTTCT  200

seq1  ATAATCCAAGAAAGATTTTATTTAGAAGAGAGAAAAATATTTCAAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCAAGAAAGATTTTATTTAGAAGAGAGAAAAATATTTCAAAATGA  250

seq1  AGCAAAAAAGATAAACCCTTTTAATGTAAAATTATATATTGGTTAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAAGATAAACCCTTTTAATGTAAAATTATATATTGGTTAAATGG  300

seq1  AAAAAAGAAGTCTGGGCAAGCTGTTTCTGAAATTTAAGGTGGCAAGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAGTCTGGGCAAGCTGTTTCTGAAATTTAAGGTGGCAAGGGAG  350

seq1  CCTTCACTTCAGCTCGTCAGGGTTATGGACAATGTGGCTAGAGATGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTTCAGCTCGTCAGGGTTATGGACAATGTGGCTAGAGATGAAAC  400

seq1  TGAAGAGTCAACACTTCTTAGTGCAAAGATTAGGGATAATAGCCTATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTCAACACTTCTTAGTGCAAAGATTAGGGATAATAGCCTATTAC  450

seq1  AGAAAATGGGCAGGACTTAAAAGCCCATGAGTCTTCCAGACACCCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGGGCAGGACTTAAAAGCCCATGAGTCTTCCAGACACCCACAGT  500

seq1  ACAGAGCAACGGAAGAATACTGCATGCATACCCATATTCTGCCAATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAACGGAAGAATACTGCATGCATACCCATATTCTGCCAATGGAA  550

seq1  AGTGGACAGGCAATATTGAAACTGACACTAGAATGCCATTTCTTTATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACAGGCAATATTGAAACTGACACTAGAATGCCATTTCTTTATTGT  600

seq1  GACTATAAGCTAAGAATTAAGACTTGGGTCTAAAACTTCTATGAGATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATAAGCTAAGAATTAAGACTTGGGTCTAAAACTTCTATGAGATTCT  650

seq1  GATTTCTCCACATCTGACCTTTTGTCTTTCCCCAGCACTAATAATATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCCACATCTGACCTTTTGTCTTTCCCCAGCACTAATAATATTTG  700

seq1  GCATATGTGAAAGGAGTCATTTTGTTGAGAAGGAACTAAAAACAATATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTGAAAGGAGTCATTTTGTTGAGAAGGAACTAAAAACAATATAG  750

seq1  AGCTATCATCTAATATCTTTTTAAACCCAAAAGTATGTGTTTATTTCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCATCTAATATCTTTTTAAACCCAAAAGTATGTGTTTATTTCAGC  800

seq1  AAGCTTTAACCTGGTATAGTACCAAAATAATAAGACAGATAAAATGA-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGCTTTAACCTGGTATAGTACCAAAATAATAAGACAGATAAAATGATTT  850

seq1  AGTACCAAGTAAGAGTTACAAAATTTGAACACTGAAGACAAGCCTTTCTT  899
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  AGTACCAAGTAAGAGTTAC-AAATTTGAACACTGAAGACAGGCCTTTCTT  899

seq1  TGAATTAGAATTAGTCACTCACATAAGGTTATAATCATGGAGTCAGCTTG  949
      |||||||||||||||||||||||||||||||||||||| |||||||||  
seq2  TGAATTAGAATTAGTCACTCACATAAGGTTATAATCAT-GAGTCAGCT--  946

seq1  TTCACAAAGGGGAAAAAAAGGAGAGATTTAAAGAGAAGATATGCAATACT  999
       |||||   ||| |||||||||||||||||||||| |||||||| |||||
seq2  GTCACA---GGGGAAAAAAGGAGAGATTTAAAGAG-AGATATGC-ATACT  991

seq1  GAAGATTGTAGATACAAGACGAAACCCCATCCAAATGATTAAAAAAATGT  1049
      | ||||||||||||| ||||||||  |||||  ||||||  |||||||||
seq2  G-AGATTGTAGATAC-AGACGAAA--CCATC--AATGAT--AAAAAATGT  1033

seq1  AAAGTGAACAAAGACTTTAAGGTAAGTTGCTATCTTACAAAGCAGCTG  1097
       ||||||   | |||||||| |||   ||||||||   | ||||||||
seq2  -AAGTGA--CAGGACTTTAA-GTA--GTGCTATCT---ACAGCAGCTG  1072