BAC Information

Click to search

BAC

Clone NameB6Ng01-090I14
Chromosome14 (Build37)
Map Location 94,445,411 - 94,446,580
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090I14.bB6Ng01-090I14.g
ACCDH902807DH902808
length1,1881,146
definitionDH902807|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I14, 5' end.DH902808|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttacctgaggaataacaaatggctgagaagcacctgaaaaatgt
tcaacatccttaattatcagggaaatgctaatgaaaacatccctgcattt
ccacctcacaccaatcagaatggctgagataaaaaattcaggtgacagca
gatgctggtaaggacatggaaaaggaggaacactcctccattgttggtgg
gattgcaaacttgtttaaccactctggaaatcagtctggtgtttcctcag
aaaattagacttagtaccaatggaggatccagcaatacctctcctgggca
tgtatccagaagatgttccaactggtaagaaggacacatgctcacctatg
ttcatacctgtcttatttataatagccagaacctggaaagaacccagatg
cccctcaacagactaatggatacagaaaatgtggtatatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tgaatggacttggagtgtatcatcctgagtgaggtaactcaatcacaaaa
gaactcacatgatatatactcactgataagtggatattatcccagaaact
tagaatacccaagatacaagatacaatatacaagttgcaaaacacatgaa
acgcaagaagaatgaaaaccaaagtgtggacactttgcctcttcttagaa
ttggggaaaaaaacacccatggaaggagttacagagacaaagtttggggc
tgagatgaaaggatggaccatctagagacttccacaaccagggatccatc
ccataatcagcttccaaatgctgacaccatttgcatacactagcaagact
ttgctgaaggaccttgacatatctggtgtcttgtggagactatgctggtg
cctggcaacacagaagttgaatgctcacagtcagcttattggatggaaca
cggggcctctcagtggaggagtttgaggaatgtacccaggagcttaagga
ttctgcaaccctatagtggaacaacattatggactaccagtaccctggag
ctctatgtctgtagctactatggtatcaaagatgcctgtggccatcatgg
gaaaagaagatcctttgtctttcatcttttttgcctctgagatcaggaga
attgccagggtaagatttattagttgttgtgagctcgc
gaattcaaagggaaatgaagccatcaagtggaactgtttgccagaactct
gagcagcaaacataaatggcccatttctaagtctaaagatgtagaatgtc
ctggaaagagtcatctttcaccaggtacaaaggtgaagacagatcttgca
aacacagaagaagagttctgcttattagctgtaagaaaaagactgtgatt
aaagtaaaatatgcaagagagttgccttttcagacagcacatgatctagt
tagaacaaaggtgcctgaacttggaaaagcaatttgccgtataatggtgt
gcaggagttctaacaatggcaccacctgaagagcctcagtaagaaatgta
ttggtttggaagtctttttgaataaacaaaatgctttaagtaaaaccttt
gcagttcaccctttccttatttaatttcttcctgtttctatgatagcaaa
taatgccaattacatctgctctacttcttaatatggcaaaggtctggtta
tttttccatacagcacgcttttaaaggaatgcggttgtcaaggaattgaa
ctgacaccattaccacgatagtcagctggatattacaggtaggctcctgc
tctaagtgtatatttatactacactcttgcaaagttttaaagtacacatt
tacagaattttgtctacattaagggaagtaagagcatggagatggtttcc
ttggtgatatttaaaaatccgagatacatgttttacacttttcttaagtg
gttttgatgaggagagaatctgttacaaagtgaccttttgcatttggtat
tccattaatgatcccctgctgtgttccaggcagtgtgctagaccttggta
agatgaaagatagtcagtgtctttcatggagttaatagggcacagggaag
agaaactcatagctttatagtaaattcccttctatccctggctgcggttt
gataaaaaatatccccaaaggcttctgggcttgaatacttggttctgatt
gttatactgggtttggaaggttgtgggacctttagaaatggagcttgttg
gaggagttagctacttgaggacaccctgggatcatagctacctcactttg
ttgtcctgcataaaggcattgaccaactgcttcacactaataccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94445411_94446580
seq2: B6Ng01-090I14.g_67_1212

seq1  GAATTCAAAGGGAAATGAAGCCATCAAGTGGAACTGTTTGCCAGAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGAAATGAAGCCATCAAGTGGAACTGTTTGCCAGAACTCT  50

seq1  GAGCAGCAAACATAAATGGCCCATTTCTAAGTCTAAAGATGTAGAATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAAACATAAATGGCCCATTTCTAAGTCTAAAGATGTAGAATGTC  100

seq1  CTGGAAAGAGTCATCTTTCACCAGGTACAAAGGTGAAGACAGATCTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGAGTCATCTTTCACCAGGTACAAAGGTGAAGACAGATCTTGCA  150

seq1  AACACAGAAGAAGAGTTCTGCTTATTAGCTGTAAGAAAAAGACTGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAAGAAGAGTTCTGCTTATTAGCTGTAAGAAAAAGACTGTGATT  200

seq1  AAAGTAAAATATGCAAGAGAGTTGCCTTTTCAGACAGCACATGATCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAATATGCAAGAGAGTTGCCTTTTCAGACAGCACATGATCTAGT  250

seq1  TAGAACAAAGGTGCCTGAACTTGGAAAAGCAATTTGCCGTATAATGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAAGGTGCCTGAACTTGGAAAAGCAATTTGCCGTATAATGGTGT  300

seq1  GCAGGAGTTCTAACAATGGCACCACCTGAAGAGCCTCAGTAAGAAATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTTCTAACAATGGCACCACCTGAAGAGCCTCAGTAAGAAATGTA  350

seq1  TTGGTTTGGAAGTCTTTTTGAATAAACAAAATGCTTTAAGTAAAACCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGGAAGTCTTTTTGAATAAACAAAATGCTTTAAGTAAAACCTTT  400

seq1  GCAGTTCACCCTTTCCTTATTTAATTTCTTCCTGTTTCTATGATAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCACCCTTTCCTTATTTAATTTCTTCCTGTTTCTATGATAGCAAA  450

seq1  TAATGCCAATTACATCTGCTCTACTTCTTAATATGGCAAAGGTCTGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAATTACATCTGCTCTACTTCTTAATATGGCAAAGGTCTGGTTA  500

seq1  TTTTTCCATACAGCACGCTTTTAAAGGAATGCGGTTGTCAAGGAATTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATACAGCACGCTTTTAAAGGAATGCGGTTGTCAAGGAATTGAA  550

seq1  CTGACACCATTACCACGATAGTCAGCTGGATATTACAGGTAGGCTCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACCATTACCACGATAGTCAGCTGGATATTACAGGTAGGCTCCTGC  600

seq1  TCTAAGTGTATATTTATACTACACTCTTGCAAAGTTTTAAAGTACACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTGTATATTTATACTACACTCTTGCAAAGTTTTAAAGTACACATT  650

seq1  TACAGAATTTTGTCTACATTAAGGGAAGTAAGAGCATGGAGATGGTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATTTTGTCTACATTAAGGGAAGTAAGAGCATGGAGATGGTTTCC  700

seq1  TTGGTGATATTTAAAAATCCGAGATACATGTTTTACACTTTTCTTAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATATTTAAAAATCCGAGATACATGTTTTACACTTTTCTTAAGTG  750

seq1  GTTTTGATGAGGAGAGAATCTGTTACAAAGTGACCTTTTGCATTTGGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATGAGGAGAGAATCTGTTACAAAGTGACCTTTTGCATTTGGTAT  800

seq1  TCCATTAATGATCCCCTGCTGTGTTCCAGGCAGTGTGCTAGACCTTGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAATGATCCCCTGCTGTGTTCCAGGCAGTGTGCTAGACCTTGGTA  850

seq1  AGATGAAAGATAGTCAGTGTCTTTCATGGAGTTAATAGGGCAACAGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGATGAAAGATAGTCAGTGTCTTTCATGGAGTTAATAGGGC-ACAGGGAA  899

seq1  GAGAAAACTCATAAGCTTTAATAGTAAATTCACTTCTATCCCTGGCTGCG  950
      ||| |||||||| |||||| ||||||||||| ||||||||||||||||||
seq2  GAG-AAACTCAT-AGCTTT-ATAGTAAATTCCCTTCTATCCCTGGCTGCG  946

seq1  GTTTGAATAAAAAATATCCCCCAAAGGCTTCTGGGCTTGAATACTTGGTT  1000
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTTG-ATAAAAAATAT-CCCCAAAGGCTTCTGGGCTTGAATACTTGGTT  994

seq1  CCTGATTGTTATACTGGGTTTGGAAGGTTGTGGGACCTTTAGAAAATGGA  1050
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  -CTGATTGTTATACTGGGTTTGGAAGGTTGTGGGACCTTTAG-AAATGGA  1042

seq1  GCCTTGTTGGAAGAAGTAGGCTACTTGAGGACAACCCTGGGAATTCATAG  1100
      | |||||||| || |||  ||||||||||||| |||||||||  ||||||
seq2  G-CTTGTTGG-AGGAGTTAGCTACTTGAGGAC-ACCCTGGGA--TCATAG  1087

seq1  TCTAACCTCACCTTCTGTTTGTT-CCCTGCTATAAA-GCATTTTGACCAA  1148
       || |||||||      ||||||  ||||| ||||| |||  ||||||||
seq2  -CT-ACCTCAC------TTTGTTGTCCTGC-ATAAAGGCA--TTGACCAA  1126

seq1  CTGCTTCACACTCATATACCCA  1170
      ||||||||||||   |||||||
seq2  CTGCTTCACACT--AATACCCA  1146