BAC Information

Click to search

BAC

Clone NameB6Ng01-090J04
Chromosome14 (Build37)14 (Build37)
Map Location 51,196,772 - 51,197,03082,226,721 - 82,227,716
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1
Downstream geneOlfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090J04.bB6Ng01-090J04.g
ACCDH902835DH902836
length986987
definitionDH902835|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J04, 5' end.DH902836|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,196,772 - 51,197,030)(82,226,721 - 82,227,716)
sequence
gaattctctcttcagttttgtaccattttgtaattgtgttatttgggatt
gtggtgtttaacttcttaagttctttacaaattttggacattatccctct
gtaagatgcagggacggtgacggtcctttcccaatctgtaggctacagtt
ttatgttgaagtctttgacctacctggacttgagttttgtgcaaggtgat
aaaaatggatctatttctattcttctacatgcagacgtctaattaaacca
tcaccatttcttgaagatgctttcttttttccattttattgtgttgcctg
tacctgaacagctctccaccagaccctacctgcccttgggtgttgggagc
acattggcgcagagtcaattaagcagactctgggagcaggtgagaaatgc
ctcagcaagctcatctgagcactgctgcaagctcctttagtaccctccac
ccacagacccattggtcccaagaaagtacctattctaaaaagtatctatt
ctaagttcttgattggctgacattatttgcaccagcaatcctggttttct
caggcagtcctcatttatgtcctcctgcaggggctgcttctccagctgca
cagctcccagcgtttacatagaggcagccctgctattcctggtacacaat
tgtgtttgcttcttcagaaaaaaaaaatcaatttccataggtgtgtcagt
ttatttcaggattttcaattcaattctattgattaacatgttgtttctgt
accaacactatgcagtttttattactatttctctgtagaacaacttgaga
tcaaaggtggtgattccagcagttgttcatttattgttcagatttttttc
agcttttctgtttttttgtttgtttgtttgtttgttttctatatgaagtc
tagaattgctctttcaagatctgcaagagtgatcttgggatttgattaga
attgtattgaatttgtaaactgcttctggtaaatgg
gaattctgaattaaaaaaaaaaaaaaagatgtcaaaatacttcacaaatg
acagcctcttcagcacacatttgctaggaaaaccggatatatacatttct
tagttgtagttttattactgagaagatacacaatgacaatggaaattctt
ataaaaaaaaagcatttacttggggctggcttacactttcagaagtatag
tctattataggcaaggtgggagacactgaggtatacaggcagccatggtg
ctggaggagaatctgagagttctatatcctgctcagcaagcagcagaaag
tgtattgagaaataccatctccaataatgccacacctactctaacaagat
ctcacctcctaatagtgtcattccttatgagcctatggggcccaattcaa
ttcaaactaccatacacatgtaaacagctgaaactatagtcccatctttc
atttcatatataaagtaatgggagttgtatcatgaccttaatataagata
cagaaaatggaaaatactatagggaaccattggagatattgcacaggcaa
taatttcacgaattataaacagaaagactagggaattaaagcaagatttc
tcattggcactgaatccaaataaaatatttcaacacaggactaggaggat
ggtttcctaaaatgtttgtttccacacagtgccagggagacagtctcctg
tttaagactccttgcttgctgttactacaggaaaaaaatatatatttgat
tcactgcacccatttcaggggtttcattatgcattgttattccatctctg
aaggattcaatgtctttgacctctacagggatctgaacgtgtgtgcacat
aggtcacttacagccactcacaccaatttaaaacaataaacacaaatatt
ttatttttaaaagctgtacagttaagttaactttcacagaggaaggcaga
ctataaatgtacttccatccctacatcacatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_51196772_51197030
seq2: B6Ng01-090J04.b_571_930

seq1  TGCACCAGCAATCCTTGGTTTCTCAGGCAGTCCTCAGTTAGGTCCTTCTG  50
      ||||||||||||||| | |||||||||||||||||| ||| ||||| |||
seq2  TGCACCAGCAATCCTGGTTTTCTCAGGCAGTCCTCATTTATGTCCTCCTG  50

seq1  CAGGAGCTGCTTTTTAGGCTGTGTGGGCCCCCCAGCATTTACATAGAGGT  100
      |||| ||||||| |   ||||    |  | |||||| |||||||||||| 
seq2  CAGGGGCTGCTTCTCCAGCTGCACAG--CTCCCAGCGTTTACATAGAGGC  98

seq1  GGCCACTTC-ATTCCTGCTACATATCCACCCTTTTGTT------TTTAG-  142
       ||| || | ||||||| ||      |||  || ||||      || || 
seq2  AGCC-CTGCTATTCCTGGTA------CACAATTGTGTTTGCTTCTTCAGA  141

seq1  ------------ATTTTGATAG-----------CCTAGCAGGA-------  162
                  ||||  ||||             |  |||||       
seq2  AAAAAAAAATCAATTTCCATAGGTGTGTCAGTTTATTTCAGGATTTTCAA  191

seq1  ---------ACTGAGTGCCAT----TACCT----CAACACT-----GTT-  189
               | ||| |  |||    |  ||    |||||||     ||| 
seq2  TTCAATTCTATTGATTAACATGTTGTTTCTGTACCAACACTATGCAGTTT  241

seq1  -----------------------AACCCCATCTCAGAG-----GATTCC-  210
                             |||   |  ||| ||     |||||| 
seq2  TTATTACTATTTCTCTGTAGAACAACTTGAGATCAAAGGTGGTGATTCCA  291

seq1  -CAG-------TATACTGGACTG-------------TTCCTGTCTTTTTT  239
       |||       | || ||  | |             || |||| ||||||
seq2  GCAGTTGTTCATTTATTGTTCAGATTTTTTTCAGCTTTTCTGT-TTTTTT  340

seq1  GTTTGTTTGTTTGTTTGTTT  259
      ||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGTTT  360

seq1: chr14_82226721_82227716
seq2: B6Ng01-090J04.g_69_1055

seq1  GAATTCTGAATTAAAAAAAAAAAAAAAGATGTCAAAATACTTCACAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAATTAAAAAAAAAAAAAAAGATGTCAAAATACTTCACAAATG  50

seq1  ACAGCCTCTTCAGCACACATTTGCTAGGAAAACCGGATATATACATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCTTCAGCACACATTTGCTAGGAAAACCGGATATATACATTTCT  100

seq1  TAGTTGTAGTTTTATTACTGAGAAGATACACAATGACAATGGAAATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTAGTTTTATTACTGAGAAGATACACAATGACAATGGAAATTCTT  150

seq1  ATAAAAAAAAAGCATTTACTTGGGGCTGGCTTACACTTTCAGAAGTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAAGCATTTACTTGGGGCTGGCTTACACTTTCAGAAGTATAG  200

seq1  TCTATTATAGGCAAGGTGGGAGACACTGAGGTATACAGGCAGCCATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATAGGCAAGGTGGGAGACACTGAGGTATACAGGCAGCCATGGTG  250

seq1  CTGGAGGAGAATCTGAGAGTTCTATATCCTGCTCAGCAAGCAGCAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAGAATCTGAGAGTTCTATATCCTGCTCAGCAAGCAGCAGAAAG  300

seq1  TGTATTGAGAAATACCATCTCCAATAATGCCACACCTACTCTAACAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGAGAAATACCATCTCCAATAATGCCACACCTACTCTAACAAGAT  350

seq1  CTCACCTCCTAATAGTGTCATTCCTTATGAGCCTATGGGGCCCAATTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCCTAATAGTGTCATTCCTTATGAGCCTATGGGGCCCAATTCAA  400

seq1  TTCAAACTACCATACACATGTAAACAGCTGAAACTATAGTCCCATCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTACCATACACATGTAAACAGCTGAAACTATAGTCCCATCTTTC  450

seq1  ATTTCATATATAAAGTAATGGGAGTTGTATCATGACCTTAATATAAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATATATAAAGTAATGGGAGTTGTATCATGACCTTAATATAAGATA  500

seq1  CAGAAAATGGAAAATACTATAGGGAACCATTGGAGATATTGCACAGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGGAAAATACTATAGGGAACCATTGGAGATATTGCACAGGCAA  550

seq1  TAATTTCACGAATTATAAACAGAAAGACTAGGGAATTAAAGCAAGATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCACGAATTATAAACAGAAAGACTAGGGAATTAAAGCAAGATTTC  600

seq1  TCATTGGCACTGAATCCAAATAAAATATTTCAACACAGGACTAGGAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCACTGAATCCAAATAAAATATTTCAACACAGGACTAGGAGGAT  650

seq1  GGTTTCCTAAAATGTTTGTTTCCACACAGTGCCAGGGAGACAGTCTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTAAAATGTTTGTTTCCACACAGTGCCAGGGAGACAGTCTCCTG  700

seq1  TTTAAGACTCCTTGCTTGCTGTTACTACAGGAAAAAAATATATATTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGACTCCTTGCTTGCTGTTACTACAGGAAAAAAATATATATTTGAT  750

seq1  TCACTGCACCCATTTCAGGGGTTTCATTATGCATTGTTATTCCATCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCACCCATTTCAGGGGTTTCATTATGCATTGTTATTCCATCTCTG  800

seq1  AAGGATTCAATGTCTTTGACCTCTACAGGGATCTGAACGTGTGTGCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCAATGTCTTTGACCTCTACAGGGATCTGAACGTGTGTGCACAT  850

seq1  AGGTCACTTACAGCCACTCACACCAATTTAAAACAATAAACACAAATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTTACAGCCACTCACACCAATTTAAAACAATAAACACAAATATT  900

seq1  TTAATTTTTTAAAAGCTGTACAGTTAAGTTAACTTTCAACAGAGGAAAGG  950
      |||  |||||||||||||||||||||||||||||||| ||||||| ||||
seq2  TTA--TTTTTAAAAGCTGTACAGTTAAGTTAACTTTC-ACAGAGG-AAGG  946

seq1  CAGGACTATAAATTGTACTTCCCATCCCTTACATCCAACATA-ATAT  996
      || ||||||||| ||||||| ||||||| ||||||  ||||| ||||
seq2  CA-GACTATAAA-TGTACTT-CCATCCC-TACATC--ACATATATAT  987