BAC Information

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BAC

Clone NameB6Ng01-090N07
Chromosome14 (Build37)
Map Location 88,020,160 - 88,021,289
singlet/doubletsinglet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090N07.bB6Ng01-090N07.g
ACCDH903027DH903028
length8781,122
definitionDH903027|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N07, 5' end.DH903028|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatctcaggttgttttagtttcatgtctcctactgtgtcttagt
tagggttttactactgtgagcagacaccatgacgaaagcatctcttataa
ggacatttaactggagctgacttataggttcagaggttcagtccattatc
atcaaggcaggaacatggcagcatccaggcaggcatagtgcaggaggaat
tgagagttctacatcttcacctggaggctgctagcagaatatttgcttcc
aggcaactaggataagggttttaaaacccacacccacagtagcacacgac
ctccatcagggccacacctccaatagtgacactctctgggccaagcatat
acaaaccataacactgtgatactacactgaaacaaaaaagcaacttatgc
acattggtatgttttgcctgcatgtatgtctgggtgaggttgtcagatcg
tggaattacatgtgagctgccatgtggatgctgtcatgtaggtggtggga
attgaaccagggtccaatggaagagcagtcagtactgctgagccatctca
gagcttgaccaataaagatgtggatgcttgccaaccattggaatgagcac
agagcctccaatggaagagttaggggaaggactgaagtctgaaggggttt
gcaaccccataaggagaacaacaatattaaccaaccagaccccctcccaa
agctcccagggactaaataaaccaaagagtacacatgcagcgacccatgg
ctccagctgtatacaaagcagaggattgccttatctggcatcaatgggag
ggcaggcccttggtcctgtggagactcgatgccccagtgtagggcaatga
ggctagagtgggtgggtaggtgggtggg

gaattcaccccagactagataaatagactcccaggggttagaaaggtgtt
taacaaagcaactcaggaaactttaggtgagaagttaggttaagaatacg
acaaactgtgtgctataaacttagtaccactataaagcactcattatggg
cttagtacttagtgcaagtaagtgccacactttggccccagcttctccat
aagcaaattcaaattcacgtggttcttgtggcttctgagggtgtgatagg
tagaaaatatataagctaagtcttaatggatgtcatatgcattcaaatgt
attctcaacactcagtgagatcaatgagacactgctggttttatttcatg
cactctagaacatttggaagactgtgacataaagggtttttttcccctta
gaaattcacaggcattcatagttcttcatctttttgtgataatcgtttgt
cctcaaccactgttagagagaggagagggtgttcgttcatttacccaata
tttatatattttcttgatttttttcatgaacttttggaagtcttggtttt
gcttttttctgtttatacgaatgatcagtggaggcactttggatcagtca
ggtataactttatgtccttcaaaaccactggttttcaaactgtgggtcat
gaccattttggggttaaatgaccctttcgtaagagttacatatcaggtgt
cctgcttatcagatatttacattatgattcatagcactaggaaaattatg
gtgatgaagtagtaataaaatacttttatggttgggggtcactacaacag
gaggaactatattatcgggtgaagcattagaaggttgagaaccactgctc
tcaagtttacacattttgagaagcaaaatgaagacttttgaatttattgc
acagtgattgaggatcatgagagtcatttcttttcagaacgaaataggat
tatactagctcctcttctcccctctcccttcctctttctcttttctgtcc
ttcctttcttcccttcccctcttctctccctattttgcttttctttaaat
tggacatggattacctgcatgtaagtgtgtaacacatgcatacctaatcc
caaggtaaaaatagggcattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_88020160_88021289
seq2: B6Ng01-090N07.g_67_1188

seq1  GAATTCACCCCAGACTAGATAAATAGACTCCCAGGGGTTAGAAAGGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCAGACTAGATAAATAGACTCCCAGGGGTTAGAAAGGTGTT  50

seq1  TAACAAAGCAACTCAGGAAACTTTAGGTGAGAAGTTAGGTTAAGAATACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGCAACTCAGGAAACTTTAGGTGAGAAGTTAGGTTAAGAATACG  100

seq1  ACAAACTGTGTGCTATAAACTTAGTACCACTATAAAGCACTCATTATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGTGTGCTATAAACTTAGTACCACTATAAAGCACTCATTATGGG  150

seq1  CTTAGTACTTAGTGCAAGTAAGTGCCACACTTTGGCCCCAGCTTCTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTACTTAGTGCAAGTAAGTGCCACACTTTGGCCCCAGCTTCTCCAT  200

seq1  AAGCAAATTCAAATTCACGTGGTTCTTGTGGCTTCTGAGGGTGTGATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATTCAAATTCACGTGGTTCTTGTGGCTTCTGAGGGTGTGATAGG  250

seq1  TAGAAAATATATAAGCTAAGTCTTAATGGATGTCATATGCATTCAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATATATAAGCTAAGTCTTAATGGATGTCATATGCATTCAAATGT  300

seq1  ATTCTCAACACTCAGTGAGATCAATGAGACACTGCTGGTTTTATTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAACACTCAGTGAGATCAATGAGACACTGCTGGTTTTATTTCATG  350

seq1  CACTCTAGAACATTTGGAAGACTGTGACATAAAGGGTTTTTTTCCCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGAACATTTGGAAGACTGTGACATAAAGGGTTTTTTTCCCCTTA  400

seq1  GAAATTCACAGGCATTCATAGTTCTTCATCTTTTTGTGATAATCGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCACAGGCATTCATAGTTCTTCATCTTTTTGTGATAATCGTTTGT  450

seq1  CCTCAACCACTGTTAGAGAGAGGAGAGGGTGTTCGTTCATTTACCCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACCACTGTTAGAGAGAGGAGAGGGTGTTCGTTCATTTACCCAATA  500

seq1  TTTATATATTTTCTTGATTTTTTTCATGAACTTTTGGAAGTCTTGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATTTTCTTGATTTTTTTCATGAACTTTTGGAAGTCTTGGTTTT  550

seq1  GCTTTTTTCTGTTTATACGAATGATCAGTGGAGGCACTTTGGATCAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTCTGTTTATACGAATGATCAGTGGAGGCACTTTGGATCAGTCA  600

seq1  GGTATAACTTTATGTCCTTCAAAACCACTGGTTTTCAAACTGTGGGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAACTTTATGTCCTTCAAAACCACTGGTTTTCAAACTGTGGGTCAT  650

seq1  GACCATTTTGGGGTTAAATGACCCTTTCGTAAGAGTTACATATCAGGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTTGGGGTTAAATGACCCTTTCGTAAGAGTTACATATCAGGTGT  700

seq1  CCTGCTTATCAGATATTTACATTATGATTCATAGCACTAGGAAAATTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTATCAGATATTTACATTATGATTCATAGCACTAGGAAAATTATG  750

seq1  GTGATGAAGTAGTAATAAAATACTTTTATGGTTGGGGGTCACTACAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAGTAGTAATAAAATACTTTTATGGTTGGGGGTCACTACAACAG  800

seq1  GAGGAACTATATTATCGGGTGAAGCATTAGAAGGTTGAGAACCACTGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTATATTATCGGGTGAAGCATTAGAAGGTTGAGAACCACTGCTC  850

seq1  TCAAGTTTACACA-TTTGAGAAGCAAAATGAAGACATTTGAATTTA-TGC  898
      ||||||||||||| ||||||||||||||||||||| |||||||||| |||
seq2  TCAAGTTTACACATTTTGAGAAGCAAAATGAAGACTTTTGAATTTATTGC  900

seq1  ACAGTGATTGAGGATCATGAGAGTCATTTCTTTCCAGAACGAAATAGGAT  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAGTGATTGAGGATCATGAGAGTCATTTCTTTTCAGAACGAAATAGGAT  950

seq1  TATACTAGCTCCTCTTCTCCCCTCTCCCTTCCCTCTTTCTTCTTTTCCTG  998
      |||||||||||||||||||||||||||||| |||||||| |||||| |||
seq2  TATACTAGCTCCTCTTCTCCCCTCTCCCTT-CCTCTTTC-TCTTTT-CTG  997

seq1  TCCTTCCCTTTCTTCCCCTTCCCCCTCTTCTCTCCCTATTTTGCTTTTCT  1048
      ||||| |||||||||||  | |||||||||||||||||||||||||||||
seq2  TCCTT-CCTTTCTTCCC--TTCCCCTCTTCTCTCCCTATTTTGCTTTTCT  1044

seq1  TTAAAAATTTGTACATGGATTACCTGCATGTAAGTGTGTACCACATGCAT  1098
      |||||   ||| |||||||||||||||||||||||||||| |||||||||
seq2  TTAAA---TTGGACATGGATTACCTGCATGTAAGTGTGTAACACATGCAT  1091

seq1  ACCTAATGCCCAAGGTAAGAATAGGGCATTGG  1130
      ||||||| |||||||||| |||||||||||||
seq2  ACCTAAT-CCCAAGGTAAAAATAGGGCATTGG  1122


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