BAC Information

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BAC

Clone NameB6Ng01-092C09
Chromosome14 (Build37)
Map Location 104,392,954 - 104,394,128
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092C09.bB6Ng01-092C09.g
ACCDH903988DH903989
length1,1481,251
definitionDH903988|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C09, 5' end.DH903989|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgccatctgtcttggagtatggagcccgtaccccagaaatggtg
gcgcaggagcacagaggaatctgcatgtctggtgacatcatggaggtccc
acgccaacctcagactttctgaccagggcggcttgtgtgtgagagaagaa
gctcaggcattttacagccgctgttattttagggctgttattcttaaacg
ataaaagatctttcagaaacaaaataattgtaatgttgaggaggaaggag
gtgaagtgtggcacagcatactagctttgccataaccaactattcaggcc
atgcactagccttgtgcatggctaatgcaatcactattcatgcttacaga
agataaggccagatggcacactgcaatgcttacttagttcacagagccac
ttaaacaagttctattaaaacggatctctacgtcatgctttctctcttta
ctctatttgctacttataagaatttgttcttagttctacgtttcttgtct
taattcaaagcctgccttagagtcttctgatcaaaggtattttggaagat
agtatgcatcgatttatgtgacacttttccaagaagattgtacatatgtt
tgtaataagattggttattctttgcaatatttaactttatttttaaatct
gtttttagtgggttctaagtatcttggtggtgtcatttctgtatgtacaa
ccatatctaaacttgttttcttgctttgtgagtggtgttggttctctcgt
ggttggcctgaaagtgttagcaaagcttaccttgcttagaaagcacgctt
tgctcaatgctttagttttttttttttttcttatttaggtgtattttatg
attattttcatgccagatgactggtcaagtctgaagaatgtaatttgcct
gagtgaaacagaggtcaattatcagtcatggtctaagctcagtcattaat
taataggattacccatgaaaggcactatttgtaaatcgcataagatgcga
attttttatgtttatctacccattttgaatactaagactgggtccatttt
atttttatcatactgtgagaaatagaaacattctgtattggtatttaata
cagaatcagaaatctttgttttccaaaccatttaaactggcaaactca
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagca
atgcgcagagagatgcgcagagaggcagtgcgcagagaggcagtgcgcag
agaggcagtgcgcagagaggcagtgcgcagactcattcattcccagagag
gaacaaaggaaaatacaacaggcatttccagtctttgaaggagccgaggg
tgggcgtgtccacgctccggtagaatacttacaaattaaagaacttgccg
agtcggtccgtaaatacggaaccaatgctaattttaccttggtgcagtta
gacaggctcgccggcatggcactaactcctgctgactggcaaacggttgt
aaaagccgctctccctagtatgggcaaatatatggaatggagagctcttt
ggcatgaaactgcacaagcgcaggcccgagcaaacgcagctgctttgact
ccagagcagagagattggacttttgacttgttaacgggtcagggagctta
ttctgctgatcagacaaactaccattggggagcttatgcccagatttctt
ccacggctattagggcctggaaggcgctctctcgagcaggtgaaaccact
gggcagttaacaaagataatccagggacctcagaatccttctcagatttt
gtggccagaatgacagaggcagcagagcgtatttttggagagtcagagca
agctgcgcctctgatagaacagctaatctatgagcaagccacaaaggagt
gccgagcggccatagccccaagaaagacaaggcttacagactggctcagg
tctgtcgagagcttgggggactctcacaatgcagcttagcggccgcatct
tcatctcagaaccgctcatgagcagaaatgatcagagacatgttttattg
cggaaagcctgggcaattagaaagattgcagagctccagatataacaggg
aggactctcactctttgctctaggttgcaaggtttctataaacctgaaca
tggtcctctcttgagagaatataaggggcagtcttcccacttaagtcaac
agctatgccaaacggttctcggccttgttctcaggcctcctagcaatata
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104392954_104394128
seq2: B6Ng01-092C09.b_43_1190

seq1  GAATTCTGCCATCTGTCTTGGAGTATGGAGCCCGTACCCCAGAAATGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCATCTGTCTTGGAGTATGGAGCCCGTACCCCAGAAATGGTG  50

seq1  GCGCAGGAGCACAGAGGAATCTGCATGTCTGGTGACATCATGGAGGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGAGCACAGAGGAATCTGCATGTCTGGTGACATCATGGAGGTCCC  100

seq1  ACGCCAACCTCAGACTTTCTGACCAGGGCGGCTTGTGTGTGAGAGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAACCTCAGACTTTCTGACCAGGGCGGCTTGTGTGTGAGAGAAGAA  150

seq1  GCTCAGGCATTTTACAGCCGCTGTTATTTTAGGGCTGTTATTCTTAAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGCATTTTACAGCCGCTGTTATTTTAGGGCTGTTATTCTTAAACG  200

seq1  ATAAAAGATCTTTCAGAAACAAAATAATTGTAATGTTGAGGAGGAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGATCTTTCAGAAACAAAATAATTGTAATGTTGAGGAGGAAGGAG  250

seq1  GTGAAGTGTGGCACAGCATACTAGCTTTGCCATAACCAACTATTCAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGTGGCACAGCATACTAGCTTTGCCATAACCAACTATTCAGGCC  300

seq1  ATGCACTAGCCTTGTGCATGGCTAATGCAATCACTATTCATGCTTACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTAGCCTTGTGCATGGCTAATGCAATCACTATTCATGCTTACAGA  350

seq1  AGATAAGGCCAGATGGCACACTGCAATGCTTACTTAGTTCACAGAGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGCCAGATGGCACACTGCAATGCTTACTTAGTTCACAGAGCCAC  400

seq1  TTAAACAAGTTCTATTAAAACGGATCTCTACGTCATGCTTTCTCTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAGTTCTATTAAAACGGATCTCTACGTCATGCTTTCTCTCTTTA  450

seq1  CTCTATTTGCTACTTATAAGAATTTGTTCTTAGTTCTACGTTTCTTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTGCTACTTATAAGAATTTGTTCTTAGTTCTACGTTTCTTGTCT  500

seq1  TAATTCAAAGCCTGCCTTAGAGTCTTCTGATCAAAGGTATTTTGGAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAAGCCTGCCTTAGAGTCTTCTGATCAAAGGTATTTTGGAAGAT  550

seq1  AGTATGCATCGATTTATGTGACACTTTTCCAAGAAGATTGTACATATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCATCGATTTATGTGACACTTTTCCAAGAAGATTGTACATATGTT  600

seq1  TGTAATAAGATTGGTTATTCTTTGCAATATTTAACTTTATTTTTAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAGATTGGTTATTCTTTGCAATATTTAACTTTATTTTTAAATCT  650

seq1  GTTTTTAGTGGGTTCTAAGTATCTTGGTGGTGTCATTTCTGTATGTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGTGGGTTCTAAGTATCTTGGTGGTGTCATTTCTGTATGTACAA  700

seq1  CCATATCTAAACTTGTTTTCTTGCTTTGTGAGTGGTGTTGGTTCTCTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTAAACTTGTTTTCTTGCTTTGTGAGTGGTGTTGGTTCTCTCGT  750

seq1  GGTTGGCCTGAAAGTGTTAGCAAAGCTTACCTTGCTTAGAAAGCAGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTTGGCCTGAAAGTGTTAGCAAAGCTTACCTTGCTTAGAAAGCACGCTT  800

seq1  TGCTCAATGCTTTAGTTTTTTTTTTTTTTTCTTATTTAGGTGTATTTTAT  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCTCAATGCTTTAG-TTTTTTTTTTTTTTCTTATTTAGGTGTATTTTAT  849

seq1  GATTATTTTCATGCCAGATGACTGGTCAAGTCTGAAGAATGTAATTTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTCATGCCAGATGACTGGTCAAGTCTGAAGAATGTAATTTGCC  899

seq1  TGAGTGAAACAGAGGTCAATTATCAGCCATGGTCTAAGCTCAAGTCATTA  950
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TGAGTGAAACAGAGGTCAATTATCAGTCATGGTCTAAGCTC-AGTCATTA  948

seq1  ATTAATAGGAATTACCCATGAAA-GCACTAATTTGTAAATCGCATTAAGA  999
      ||||||||| ||||||||||||| ||||| |||||||||||||| |||||
seq2  ATTAATAGG-ATTACCCATGAAAGGCACT-ATTTGTAAATCGCA-TAAGA  995

seq1  TGCGAAATCTTTTATGTTTAATCTTACCCATCTTGAAATACTTAGACTGG  1049
      |||| ||| |||||||||| ||| ||||||| ||| |||||| |||||||
seq2  TGCG-AATTTTTTATGTTT-ATC-TACCCATTTTG-AATACTAAGACTGG  1041

seq1  GTTCAATTTTAATTTTATCATTTACTTGTGAGAAATAAGGAAACATTCTG  1099
      | || |||||| ||||||||  ||| |||||||||||  |||||||||||
seq2  G-TCCATTTTATTTTTATCA--TAC-TGTGAGAAATA--GAAACATTCTG  1085

seq1  TTATTGTTATTTAATTACAAGATACAAGAAAATCTTTGTTTTTTCCCACA  1149
       ||||| ||||||| ||| |||  ||   |||||||||||||      | 
seq2  -TATTGGTATTTAA-TAC-AGAATCA--GAAATCTTTGTTTT------CC  1124

seq1  AACCCATTTTAAAACTGGCAGACTCA  1175
      || ||||||  ||||||||| |||||
seq2  AAACCATTT--AAACTGGCAAACTCA  1148