BAC Information

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BAC

Clone NameB6Ng01-093A08
Chromosome14 (Build37)
Map Location 53,547,102 - 53,703,667
singlet/doubletdoublet
Overlap geneLOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322
Upstream geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850
Downstream geneEG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093A08.bB6Ng01-093A08.g
ACCDH904625DH904626
length1,0961,109
definitionDH904625|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A08, 5' end.DH904626|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,702,120 - 53,703,667)(53,547,102 - 53,548,219)
sequence
gaattctctgctacattctaattcagtatattgtttgtgttgtcggactt
tacctcagctcccttatctgtcccacggattcccaggttttgtgtcttta
atgtgtttcagagttcttggaaattttgggtatgctcattagttttcttt
cttcccatgtctctgatccactctgtccaatattgtctgtcagcgatgct
ttccactgtgtttaatttaatttcccagcatttatatttggttcattttc
agagtctcaattttcttgctgagtttttcttcatgtctttcaacttcccc
tccaagttactgttttactcactttgtaacttccttgtctaggtcctgaa
ttgattttcttgctctcttcatctgcttatttgagtgctatctattatca
ttgatcttttttgttgttgttgttcttcaaagccagaatctgataacatt
ttctggcattttggctgtctccttatctttggtatccactacagaggaga
tgtgagattgcaggggctgctttagagtctcaacttaaattatctagaaa
tagatttgccagcatttccttccccatgtggctctgcttcagggttggac
atgaaatagaaaagtgtagaagacttggaagacaggattgatacttttat
gttttctatgactgcatatttgggcccatgccattctcccaaattcaccc
ataccaggaatgtgccaggttgggaccctcaggtgctttcagttcggtat
gtgacatgctggcaaatggcctgacttcttctgaagccctcaaataagag
agactggagaggggaaatttgtccttgattccaattttcttatggttctc
actgcactttcacgggtctcagttcacacggatgctgccctcgtgcagct
ctctttcccacctgatgaactagctggtgatgttcagtacctcagtgctc
agtgccaggtgtaaagaaaaagattggtaggcactccccagtcaccccca
gtcatgtgatgggtgaagtccttctactgtcttcactacttattccccgt
tcccagacaactcactcctgatggtactttcaaaggaagatgttct
gaattcactgaaataggtggaacattgtcctcttgcaaccgaaagcctat
aagagacatgaaaaaaagccatttctcaggtgtcataactctcaagaaca
aacagagacctaaatatcatttccaagaaaaggaagagttgcttgataaa
tgataaaagtactctgtgatatgagagtggattagtaaatacagtactag
atagaagtaatgttacatatacacacattatatcggaatatatcacacat
acatttatatatgaaaacgtcacatatatacacttgcatgtgaaatatag
tgtatatgatgcattaggtttaaagctaagaaataacctcactagtgtgt
acaaataccattattgatctttcaatattagaacatatttgatatgacat
gttgctgtttcatgtgtctgagtcactcatagggtcagagagcacttaac
tagagtcctgactggctttgaatgcaaccacaaggtggtagtaaatctca
actgctaaggaatatgcggagagctcacttctgtgtatgctgatgattaa
ggcttggggcagaagcaaagcctttttctcagtggctgagtggacgactc
cagagctagaattgttactgagaaacaaccaccctctgataattataagt
caactgccagtcatcaagatctgggaagaacaatgaagacatgtgttgct
agtttatttacattttttctgtctatatctcattaatgagttaatattct
agggccagagaatcatcagtgggcattcctgagacatctatgggaccact
gttttactcaggatttctttagttctatagacaaagagaatcctggaagt
gatgatgccacagcctttctcttctctttccatctttctggatagggatg
agccaaggtcagcatgtgtagagctttctttcatccttagaggccaggag
ggtccagtgccatcatcactgcacttatgtagacagtgcctctctctgct
tcccttgctatagcaagaacctggaaagcatcttagctcctccattggca
ttgtcagctaatggaagaaaagaccctgagaattctactggacaagaagc
taacccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53702120_53703667
seq2: B6Ng01-093A08.b_43_1138 (reverse)

seq1  AGAACATCTTCACAGGTATAATCATTTTAGCTTCATGACTGGAAAATTCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAATTATTTTTGTGCTTTCTGGGATCCCGTATATGCTGTTTGAGGTGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTACAAGCTTAACAAAAATGGACGCTCCTTAAGCATCGTCTATCTCGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GAGCCCAGCTGAGAAGCGCATCTGCACATCCCAGAGAAGAATGGTGGCTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCATCAGCAGTCTGTATCACACATGTGTTTCTAAGTAAAGCACCCATC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TATAACATTTGGAAATAGGTATTATAAGCAACTTCTTTATATAATACATT  300
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTTGAATATATTTTAGCAAAAATTAGCTCATAGAGAACAAACAGTATT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTACAGCTGGGAATCTTGCATCATAATAATTTAAAGTGTTACTTTCTC  400
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAAGGTGGTAACAGTGCATACCTCAGACTGGGTGTCTGGAATAACAAA  450
                                                       |
seq2  -------------------------------------------------A  1

seq1  GAACATCATTCCCTTTGAAAGTTACCATCAGGAGTGAAGTAGTCTGGGAA  500
      |||||||  | |||||||||| |||||||||||||| ||| |||||||||
seq2  GAACATC--TTCCTTTGAAAG-TACCATCAGGAGTG-AGTTGTCTGGGAA  47

seq1  CGGGGAATAAGTAGTG-AGACAGTAGAAGGACTTCACCCATCACATGACT  549
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGGGGAATAAGTAGTGAAGACAGTAGAAGGACTTCACCCATCACATGACT  97

seq1  GGGGGTGACTGGGGAGTGCCTACCAATCTTTTTCTTTACACCTGGCACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGACTGGGGAGTGCCTACCAATCTTTTTCTTTACACCTGGCACTG  147

seq1  AGCACTGAGGTACTGAACATCACCAGCTAGTTCATCAGGTGGGAAAGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGGTACTGAACATCACCAGCTAGTTCATCAGGTGGGAAAGAGA  197

seq1  GCTGCACGAGGGCAGCATCCGTGTGAACTGAGACCCGTGAAAGTGCAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACGAGGGCAGCATCCGTGTGAACTGAGACCCGTGAAAGTGCAGTG  247

seq1  AGAACCATAAGAAAATTGGAATCAAGGACAAATTTCCCCTCTCCAGTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCATAAGAAAATTGGAATCAAGGACAAATTTCCCCTCTCCAGTCTC  297

seq1  TCTTATTTGAGGGCTTCAGAAGAAGTCAGGCCATTTGCCAGCATGTCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTGAGGGCTTCAGAAGAAGTCAGGCCATTTGCCAGCATGTCACA  347

seq1  TACCGAACTGAAAGCACCTGAGGGTCCCAACCTGGCACATTCCTGGTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAACTGAAAGCACCTGAGGGTCCCAACCTGGCACATTCCTGGTATG  397

seq1  GGTGAATTTGGGAGAATGGCATGGGCCCAAATATGCAGTCATAGAAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTTGGGAGAATGGCATGGGCCCAAATATGCAGTCATAGAAAACA  447

seq1  TAAAAGTATCAATCCTGTCTTCCAAGTCTTCTACACTTTTCTATTTCATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATCAATCCTGTCTTCCAAGTCTTCTACACTTTTCTATTTCATG  497

seq1  TCCAACCCTGAAGCAGAGCCACATGGGGAAGGAAATGCTGGCAAATCTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCTGAAGCAGAGCCACATGGGGAAGGAAATGCTGGCAAATCTAT  547

seq1  TTCTAGATAATTTAAGTTGAGACTCTAAAGCAGCCCCTGCAATCTCACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATAATTTAAGTTGAGACTCTAAAGCAGCCCCTGCAATCTCACAT  597

seq1  CTCCTCTGTAGTGGATACCAAAGATAAGGAGACAGCCAAAATGCCAGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGTAGTGGATACCAAAGATAAGGAGACAGCCAAAATGCCAGAAA  647

seq1  ATGTTATCAGATTCTGGCTTTGAAGAACAACAACAACAAAAAAGATCAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATCAGATTCTGGCTTTGAAGAACAACAACAACAAAAAAGATCAAT  697

seq1  GATAATAGATAGCACTCAAATAAGCAGATGAAGAGAGCAAGAAAATCAAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAGATAGCACTCAAATAAGCAGATGAAGAGAGCAAGAAAATCAAT  747

seq1  TCAGGACCTAGACAAGGAAGTTACAAAGTGAGTAAAACAGTAACTTGGAG  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTAGACAAGGAAGTTACAAAGTGAGTAAAACAGTAACTTGGAG  797

seq1  GGGAAGTTGAAAGACATGAAGAAAAACTCAGCAAGAAAATTGAGACTCTG  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTGAAAGACATGAAGAAAAACTCAGCAAGAAAATTGAGACTCTG  847

seq1  AAAATGAACCAAATATAAATGCTGGGAAATTAAATTAAACACAGTGGAAA  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACCAAATATAAATGCTGGGAAATTAAATTAAACACAGTGGAAA  897

seq1  GCATCGCTGACAGACAATATTGGACAGAGTGGATCAGAGACATGGGAAGA  1399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGCTGACAGACAATATTGGACAGAGTGGATCAGAGACATGGGAAGA  947

seq1  AAGAAAACTAATGAGCATACCCAAAATTTCCAAGAACTCTGAAACACATT  1449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTAATGAGCATACCCAAAATTTCCAAGAACTCTGAAACACATT  997

seq1  AAAGACACAAAACCTGGGAATCCGTGGGACAGATAAGGGAGCTGAGGTAA  1499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACAAAACCTGGGAATCCGTGGGACAGATAAGGGAGCTGAGGTAA  1047

seq1  AGTCCGACAACACAAACAATATACTGAATTAGAATGTAGCAGAGAATTC  1548
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGACAACACAAACAATATACTGAATTAGAATGTAGCAGAGAATTC  1096

seq1: chr14_53547102_53548219
seq2: B6Ng01-093A08.g_70_1178

seq1  GAATTCACTGAAATAGGTGGAACATTGTCCTCTTGCAACCGAAAGCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAATAGGTGGAACATTGTCCTCTTGCAACCGAAAGCCTAT  50

seq1  AAGAGACATGAAAAAAAGCCATTTCTCAGGTGTCATAACTCTCAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATGAAAAAAAGCCATTTCTCAGGTGTCATAACTCTCAAGAACA  100

seq1  AACAGAGACCTAAATATCATTTCCAAGAAAAGGAAGAGTTGCTTGATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGACCTAAATATCATTTCCAAGAAAAGGAAGAGTTGCTTGATAAA  150

seq1  TGATAAAAGTACTCTGTGATATGAGAGTGGATTAGTAAATACAGTACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAGTACTCTGTGATATGAGAGTGGATTAGTAAATACAGTACTAG  200

seq1  ATAGAAGTAATGTTACATATACACACATTATATCGGAATATATCACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTAATGTTACATATACACACATTATATCGGAATATATCACACAT  250

seq1  ACATTTATATATGAAAACGTCACATATATACACTTGCATGTGAAATATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATATATGAAAACGTCACATATATACACTTGCATGTGAAATATAG  300

seq1  TGTATATGATGCATTAGGTTTAAAGCTAAGAAATAACCTCACTAGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGATGCATTAGGTTTAAAGCTAAGAAATAACCTCACTAGTGTGT  350

seq1  ACAAATACCATTATTGATCTTTCAATATTAGAACATATTTGATATGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACCATTATTGATCTTTCAATATTAGAACATATTTGATATGACAT  400

seq1  GTTGCTGTTTCATGTGTCTGAGTCACTCATAGGGTCAGAGAGCACTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTTCATGTGTCTGAGTCACTCATAGGGTCAGAGAGCACTTAAC  450

seq1  TAGAGTCCTGACTGGCTTTGAATGCAACCACAAGGTGGTAGTAAATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCTGACTGGCTTTGAATGCAACCACAAGGTGGTAGTAAATCTCA  500

seq1  ACTGCTAAGGAATATGCGGAGAGCTCACTTCTGTGTATGCTGATGATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAAGGAATATGCGGAGAGCTCACTTCTGTGTATGCTGATGATTAA  550

seq1  GGCTTGGGGCAGAAGCAAAGCCTTTTTCTCAGTGGCTGAGTGGACGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGGCAGAAGCAAAGCCTTTTTCTCAGTGGCTGAGTGGACGACTC  600

seq1  CAGAGCTAGAATTGTTACTGAGAAACAACCACCCTCTGATAATTATAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTAGAATTGTTACTGAGAAACAACCACCCTCTGATAATTATAAGT  650

seq1  CAACTGCCAGTCATCAAGATCTGGGAAGAACAATGAAGACATGTGTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCAGTCATCAAGATCTGGGAAGAACAATGAAGACATGTGTTGCT  700

seq1  AGTTTATTTACA-TTTTTCTGTCTATATCTCATTAATGAGTTAATATTCT  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTACATTTTTTCTGTCTATATCTCATTAATGAGTTAATATTCT  750

seq1  AGGGCCAGAGAATCATCAGTGGGCATTCCTGAGACATCTATGGGACCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGAGAATCATCAGTGGGCATTCCTGAGACATCTATGGGACCACT  800

seq1  GTTTTACTCAGGATTTCTTTAGTTACTATAGACAAAGAGAATCCTGGAAG  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTTTACTCAGGATTTCTTTAGTT-CTATAGACAAAGAGAATCCTGGAAG  849

seq1  TGATGATGCCACAGCCTTTCTCTTCTCTTTCCATCTTTCTGGATAGGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGCCACAGCCTTTCTCTTCTCTTTCCATCTTTCTGGATAGGGAT  899

seq1  GAGCCAAGGTCAGCATGTGTAAGAGCTTTCTTTCATCCTAAGAGGCCAGA  949
      |||||||||||||||||||| |||||||||||||||||| ||||||||| 
seq2  GAGCCAAGGTCAGCATGTGT-AGAGCTTTCTTTCATCCTTAGAGGCCAGG  948

seq1  AGGGTCCAGTGCCATCATCAACTGCACTTATGTAGACAGTGCCTCTCTCT  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGGTCCAGTGCCATCATC-ACTGCACTTATGTAGACAGTGCCTCTCTCT  997

seq1  GCTTCCCTTGCTATAAGCAAGAACCTGGAAAGCATCCTAAGCT-CTCCAT  1048
      |||||||||||||| |||||||||||||||||||| || |||| ||||||
seq2  GCTTCCCTTGCTAT-AGCAAGAACCTGGAAAGCAT-CTTAGCTCCTCCAT  1045

seq1  TGGCATTTGTTCAGCTATGGAAAGAAAAGAGACCCTGAGAATTCTACTGG  1098
      |||||||   |||||||  | ||||||  |||||||||||||||||||||
seq2  TGGCATT--GTCAGCTAATGGAAGAAA--AGACCCTGAGAATTCTACTGG  1091

seq1  ACAAGAAAGCTAAACCCTTC  1118
      ||||| ||||| ||||||||
seq2  ACAAG-AAGCT-AACCCTTC  1109