BAC Information

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BAC

Clone NameB6Ng01-093B02
Chromosome14 (Build37)
Map Location 118,974,580 - 119,138,099
singlet/doubletdoublet
Overlap geneAbcc4
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093B02.bB6Ng01-093B02.g
ACCDH904656DH904657
length1,177881
definitionDH904656|Mus musculus domesticus DNA, BAC clone: B6Ng01-093B02, 5' end.DH904657|Mus musculus domesticus DNA, BAC clone: B6Ng01-093B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,974,580 - 118,975,746)(119,137,204 - 119,138,099)
sequence
gaattcataaacacattaaagcctggcaagtgattcagttttctcttggg
gactagagagatggctcagcaggaaagagcttgaagtggtaagttaggca
agagaggcagcagaaggatccctgtgttttgctggccaggtagcctggct
agatggctgagatccaggctcctgagactctgtctcaaaaactagggtgg
agagcaactgcagaagtcagccaatgttgacctctggcctccgtatgctt
gtgtatacacacacgggcacacgcaccctcccaaccactctgcagctaca
caaagtctcctcttgcaaaaatgagcaaaatgactcccaaaccatttcat
taattcaggttaccaaaatctgttccggaacggtatggtcctaagaatca
accgtctatggcgtgttccctccccaacagaatcaacgcgcgaagggaaa
gagtaggaattcctgcgcgaggaaaaagggtttgaatgcaaactcatttg
gttaaaaaaaatttttttttaatcagaaattctccgcttgcagggtgtgg
gaccatgcctgccgtgcctggtaaagtccctctgaaaagtctgccggaat
agtcttggaaatttgtagatttccatggctaatttttttcatattcgttc
ctaccccttttcctccaaatccgtattctacccgacatctcccatcactc
acaggtcatgtctgctactgtaacccacaggaacaaatattcatcccctg
agagccagaccgcacaagcttttcatgcatattatggggaaatcacgcgt
ctgcaggacatcaaagtcctttcagcccatgaccttagctgtgttctcta
ccagcattcagaacttggttgcgttaaataataccagtgtaggctcagaa
tgaaataaaatccaatctctgcggctgtcatggactccactccctttaga
tgaaagtcctgtggctcatctctgaaaggttcccttaaagctgaatggaa
cctactagtcacaattggaaactgtaataattttcatcagagacgagtaa
gagagtttttaattcatccaagacattacaccaggaagccaaaggtggac
aaggccgaatagcctcaaggctgtcaaggtgtattaatccaaccatatcc
aagagtggggctggcatgtgactcagt
gaattctggacgagagaatgtgagtagattagagtgctggggatggatct
ctgttggtacgcaaggaacctcacgttagaccagtctaccccataagctg
gacatggtctcaaatcacagcacttgcatggtacaggcgggaggattaga
agttcaaagccatgcttggcatcatggtgatttttgaggccagcctgaaa
tcttgcatatatgaatttatatatatgatatatatgtcaaatatatatat
atgatatatatgatcaaaacgtatcatatctcacacacgcacacacacac
acacacacacacacacatatatatatatacatacacacacacacacacac
atatatatatatatacatacacacacacacacacatacacatatatatat
atatatatcaaacaaagtgggcacactgactgtcacatcaagtggtgtgc
tatcacacaaattaggcaggttgagtgtgacccaaaaagagggatgactg
ctgaagttgacaacatcaaagttgttagtgtcttgtctgttatttactaa
tgattaaattcaaagccatgtattttggacaagaataccaaagaactgtg
aggcatggtggtctacacctgtaataccagttctggggaaacagggttag
aagggtcagttcaagaccatgttcttgactgcatagtaagttggaggcca
cactgggctctctgagatgctgtctcaacaacaaaaccaacaaacggcaa
cagacaaaaaaccaaaagcctgcagaatgatgctgtgtcctctcagatat
catgtaagagatacatggtgtgatatgtttgttgtgatatgactccatca
cacattctcagtgtcacttgtgttccctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118974580_118975746
seq2: B6Ng01-093B02.b_46_1222

seq1  GAATTCATAAACACATTAAAGCCTGGCAAGTGATTCAGTTTTCTCTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAACACATTAAAGCCTGGCAAGTGATTCAGTTTTCTCTTGGG  50

seq1  GACTAGAGAGATGGCTCAGCAGGAAAGAGCTTGAAGTGGTAAGTTAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAGAGATGGCTCAGCAGGAAAGAGCTTGAAGTGGTAAGTTAGGCA  100

seq1  AGAGAGGCAGCAGAAGGATCCCTGTGTTTTGCTGGCCAGGTAGCCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCAGCAGAAGGATCCCTGTGTTTTGCTGGCCAGGTAGCCTGGCT  150

seq1  AGATGGCTGAGATCCAGGCTCCTGAGACTCTGTCTCAAAAACTAGGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTGAGATCCAGGCTCCTGAGACTCTGTCTCAAAAACTAGGGTGG  200

seq1  AGAGCAACTGCAGAAGTCAGCCAATGTTGACCTCTGGCCTCCGTATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAACTGCAGAAGTCAGCCAATGTTGACCTCTGGCCTCCGTATGCTT  250

seq1  GTGTATACACACACGGGCACACGCACCCTCCCAACCACTCTGCAGCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATACACACACGGGCACACGCACCCTCCCAACCACTCTGCAGCTACA  300

seq1  CAAAGTCTCCTCTTGCAAAAATGAGCAAAATGACTCCCAAACCATTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTCCTCTTGCAAAAATGAGCAAAATGACTCCCAAACCATTTCAT  350

seq1  TAATTCAGGTTACCAAAATCTGTTCCGGAACGGTATGGTCCTAAGAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGGTTACCAAAATCTGTTCCGGAACGGTATGGTCCTAAGAATCA  400

seq1  ACCGTCTATGGCGTGTTCCCTCCCCAACAGAATCAACGCGCGAAGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTATGGCGTGTTCCCTCCCCAACAGAATCAACGCGCGAAGGGAAA  450

seq1  GAGTAGGAATTCCTGCGCGAGGAAAAAGGGTTTGAATGCAAACTCATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGAATTCCTGCGCGAGGAAAAAGGGTTTGAATGCAAACTCATTTG  500

seq1  GTTAAAAAAAATTTTTTTTTAATCAGAAATTCTCCGCTTGCAGGGTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAAAATTTTTTTTTAATCAGAAATTCTCCGCTTGCAGGGTGTGG  550

seq1  GACCATGCCTGCCGTGCCTGGTAAAGTCCCTCTGAAAAGTCTGCCGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGCCTGCCGTGCCTGGTAAAGTCCCTCTGAAAAGTCTGCCGGAAT  600

seq1  AGTCTTGGAAATTTGTAGATTTCCATGGCTAATTTTTTTCATATTCGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGAAATTTGTAGATTTCCATGGCTAATTTTTTTCATATTCGTTC  650

seq1  CTACCCCTTTTCCTCCAAATCCGTATTCTACCCGACATCTCCCATCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCTTTTCCTCCAAATCCGTATTCTACCCGACATCTCCCATCACTC  700

seq1  ACAGGTCATGTCTGCTACTGTAACCCACAGGAACAAATATTCATCCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCATGTCTGCTACTGTAACCCACAGGAACAAATATTCATCCCCTG  750

seq1  AGAGCCAGACCGCACAAGCTTTTCATGCATATTAGGGGGAAATCAGGCGT  800
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  AGAGCCAGACCGCACAAGCTTTTCATGCATATTATGGGGAAATCACGCGT  800

seq1  CTGCAGGACATCAAAGTCCTTTCAGCCCATGACCTTAGCTGTGTTCTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGACATCAAAGTCCTTTCAGCCCATGACCTTAGCTGTGTTCTCTA  850

seq1  CCAGCATTCAGAACTTGGTTGCGTTAAATAATACCAGTGTAGGCTCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTCAGAACTTGGTTGCGTTAAATAATACCAGTGTAGGCTCAGAA  900

seq1  TGAAATAAAATCCAATCTCTGCGGCTGTCATGGACTCCACTCCC-TTAGA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAAATAAAATCCAATCTCTGCGGCTGTCATGGACTCCACTCCCTTTAGA  950

seq1  TGAAAGTCCTGTGGCTCATCTCTGAAAGGTTCCCTTAAAGCTGAAT-GAA  998
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAAAGTCCTGTGGCTCATCTCTGAAAGGTTCCCTTAAAGCTGAATGGAA  1000

seq1  CCTACTAGTCACAATTGGAAACTGTTAATATTTTCATCAGAAAGGAGTAA  1048
      ||||||||||||||||||||||||| |  |||||||||||| | ||||||
seq2  CCTACTAGTCACAATTGGAAACTGTAATAATTTTCATCAGAGACGAGTAA  1050

seq1  GAGAG-TTTTAATTCA-CCAAGACATTACAACCAGG-AGGCAAAGGT-GA  1094
      ||||| |||||||||| |||||||||||| |||||| || ||||||| ||
seq2  GAGAGTTTTTAATTCATCCAAGACATTAC-ACCAGGAAGCCAAAGGTGGA  1099

seq1  CAA-GCCAGATAG-CTC-AGGCTGTTCAGGTTGATATATCCAACACTA--  1139
      ||| |||  |||| ||| |||||||  ||||  ||  |||||||  ||  
seq2  CAAGGCCGAATAGCCTCAAGGCTGTCAAGGTGTATTAATCCAACCATATC  1149

seq1  CGAG-GTGGGGCTGGCCATGTAGCTCAGT  1167
      | || |||||||||| |||||  ||||||
seq2  CAAGAGTGGGGCTGG-CATGTGACTCAGT  1177

seq1: chr14_119137204_119138099
seq2: B6Ng01-093B02.g_69_949 (reverse)

seq1  CAAAGGGAAACAACAAAGTGAACACTGGAGAAATGTGTGATGGAGTCAAT  50
      ||||||| ||||   ||||| ||||| ||| |||||||||||||||| ||
seq2  CAAAGGG-AACA--CAAGTG-ACACT-GAG-AATGTGTGATGGAGTC-AT  43

seq1  ATCACAACCAAAACATATCAACACCATGTATCTTCTTACATGATATTCTG  100
      ||||||||  ||||||||| |||||||||||| |||||||||||| ||||
seq2  ATCACAAC--AAACATATC-ACACCATGTATC-TCTTACATGATA-TCTG  88

seq1  AGAGGACACAGCATCATTTCTGCAGGCTTTTGGTTTTTTGTTCTGTTGCC  150
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AGAGGACACAGCATCA-TTCTGCAGGCTTTTGGTTTTTTG-TCTGTTGCC  136

seq1  GTTTGTTTGGTTTTGTTGTTGAGACAGCATCTCAGAGAGCCCAGTGTGGC  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTG-TTGGTTTTGTTGTTGAGACAGCATCTCAGAGAGCCCAGTGTGGC  185

seq1  CTCCAACTTACTATGCAGTCAAGAACATGGTCTTGAACTGACCCTTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTTACTATGCAGTCAAGAACATGGTCTTGAACTGACCCTTCTAA  235

seq1  CCCTGTTTCCCCAGAACTGGTATTACAGGTGTAGACCACCATGCCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTCCCCAGAACTGGTATTACAGGTGTAGACCACCATGCCTCACA  285

seq1  GTTCTTTGGTATTCTTGTCCAAAATACATGGCTTTGAATTTAATCATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGGTATTCTTGTCCAAAATACATGGCTTTGAATTTAATCATTAG  335

seq1  TAAATAACAGACAAGACACTAACAACTTTGATGTTGTCAACTTCAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACAGACAAGACACTAACAACTTTGATGTTGTCAACTTCAGCAGT  385

seq1  CATCCCTCTTTTTGGGTCACACTCAACCTGCCTAATTTGTGTGATAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCTTTTTGGGTCACACTCAACCTGCCTAATTTGTGTGATAGCAC  435

seq1  ACCACTTGATGTGACAGTCAGTGTGCCCACTTTGTTTGATATATATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGATGTGACAGTCAGTGTGCCCACTTTGTTTGATATATATATAT  485

seq1  ATATATGTGTATGTGTGTGTGTGTGTGTATGTATATATATATATATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTATGTGTGTGTGTGTGTGTATGTATATATATATATATGTGT  535

seq1  GTGTGTGTGTGTGTATGTATATATATATATGTGTGTGTGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATGTATATATATATATGTGTGTGTGTGTGTGTGTGT  585

seq1  GTGTGTGCGTGTGTGAGATATGATACGTTTTGATCATATATATCATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGTGTGTGAGATATGATACGTTTTGATCATATATATCATATAT  635

seq1  ATATATTTGACATATATATCATATATATAAATTCATATATGCAAGATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGACATATATATCATATATATAAATTCATATATGCAAGATTTC  685

seq1  AGGCTGGCCTCAAAAATCACCATGATGCCAAGCATGGCTTTGAACTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCAAAAATCACCATGATGCCAAGCATGGCTTTGAACTTCTA  735

seq1  ATCCTCCCGCCTGTACCATGCAAGTGCTGTGATTTGAGACCATGTCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCGCCTGTACCATGCAAGTGCTGTGATTTGAGACCATGTCCAGC  785

seq1  TTATGGGGTAGACTGGTCTAACGTGAGGTTCCTTGCGTACCAACAGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGTAGACTGGTCTAACGTGAGGTTCCTTGCGTACCAACAGAGAT  835

seq1  CCATCCCCAGCACTCTAATCTACTCACATTCTCTCGTCCAGAATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCAGCACTCTAATCTACTCACATTCTCTCGTCCAGAATTC  881