BAC Information

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BAC

Clone NameB6Ng01-093K12
Chromosome14 (Build37)3 (Build37)
Map Location 46,825,889 - 46,826,9977,220,270 - 7,220,818
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963
Downstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093K12.bB6Ng01-093K12.g
ACCDH905083DH905084
length1,1111,057
definitionDH905083|Mus musculus domesticus DNA, BAC clone: B6Ng01-093K12, 5' end.DH905084|Mus musculus domesticus DNA, BAC clone: B6Ng01-093K12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,825,889 - 46,826,997)(7,220,270 - 7,220,818)
sequence
gaattccaaatggtctaagttccacctttttctcttagaaccccttacct
gggacctattgctatgctaggagaaacccaaagtggactggtgtggataa
agtcccagagagaggttatgcttgtctttatagactagatgagataatag
ttaataacaagcataaactgctggaaatataaaggaagatacctccaaac
ccatcttgtccccctctgtcgagatgcctccataagtacttggtggagca
tagactttgcttcttgaccttgctttaattaatgactcctcaaatctgaa
agctttgcataatagtgggtttgaattgctgaattcgagtgtggtttgtt
aggcagcaagagagcctgggactgcctgccatttccactttacttaaaac
accgtagaaacttctaattaagcgttggaaatgagtaacaatcaacgtga
ggaagccatacctgggtcttcactggaatcacactcagcgtttgttacac
acatgtatattacgtggttttccctgaaataaaattatcaaatgttctat
gggaaacacttgctgtctcaaggaatgtcagcgttttaattctatccgct
tccagcaaacagcgttcccaatgtgttaacactggctcaaagttagcatt
tctgcattagtattattatctgtgaaatgtgcctcctccccaggagctca
aagaaactgaatattaggcgctggttcattttgtttgcatatcttgtgag
ggggtcaagcagggcatttctaagctgtcatgtatcgtggagcttcattg
tgacagaagataatatattatggcacactataattgtcttctgaggacac
aaaggcaagaaaacagcaccctatgtgcagagtcccttcctaaatcctgg
catggctttcatcacacttgttccgtgtctgtgacaattacaaggccatt
gtctcagtgatggtttcatgctataaatatttacttatcagaatcattaa
gttagctgagtgacacccagaaatcttgtggctgccaaggaaagtaatca
tagtgctgaatttgtcatcaatctgtggagtcttgtcaacttcattcgaa
cttctggcttc
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcgaatactttttccgaatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgtt
ttaatgtgttcttggattcggttagcaaaaattttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattgtggcttcatagactgagttg
gatagagttccctctccttctattttgtggaatagtttgtgcagaactgg
gattagatcttctttgaaggtctggtagaactctgcactaaacccatctg
gtcctggctttttttagttgggagactattaatgactgcttctatttcct
taggggttatgggactgtttagatcgttaacttgatcctgatttaacttt
ggtacctggtatctgtctagaaatttgtccatttcatccaggttttccag
ttttgttgagtatagccttttgtagaaggatctgatggtgttttggattt
cttcaggatctgttgttatgtctcccttttcatttctgattttgttaatt
aggatgtttgtccctgtgccctctagtgagtctagctaagggtttatcta
tcttgtttgatttcccaaagaaccaactcctcgtttggttaattctttga
ttagttcttcttgtttccacttggttgatttcacccctgagtttgattaa
tttcctgccgtctactcctcttggggtgaatttgcttccttttttttcta
gagcttttagatgtgttggccagctgctagatgtggtcctctcccgtttc
ttcttgaggcactcaaagctatgaagtttccctcttaaaatgctttcatt
gtgtccaaaaggtttgggtacgttggaggttctattcattaacctaaaaa
ggcttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_46825889_46826997
seq2: B6Ng01-093K12.b_43_1153 (reverse)

seq1  GAAG-CAGAAG-TCGGATGAAGTTTGAC-AGACT-CACAGATTGATGACA  46
      |||| |||||| ||| |||||| ||||| ||||| |||||||||||||||
seq2  GAAGCCAGAAGTTCGAATGAAG-TTGACAAGACTCCACAGATTGATGACA  49

seq1  AATTCAGCACTATGATTACTTTCCTTGGCAGCCACAAGATTTCTGGGTGT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCACTATGATTACTTTCCTTGGCAGCCACAAGATTTCTGGGTGT  99

seq1  CACTCAGCTAACTTAATGATTCTGATTAAGTAAATATTTATAGCATGAAA  146
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACTCAGCTAACTTAATGATTCTGA-TAAGTAAATATTTATAGCATGAAA  148

seq1  CCATCACTGAGACAATGGCCTTGTAATTGTCACAGACACGGAACAAGTGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTGAGACAATGGCCTTGTAATTGTCACAGACACGGAACAAGTGT  198

seq1  GATGAAAGCCATGCCAGGATTTAGGAAGGGACTCTGCACATAGGGTGCTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGCCATGCCAGGATTTAGGAAGGGACTCTGCACATAGGGTGCTG  248

seq1  TTTTCTTGCCTTTGTGTCCTCAGAAGACAATTATAGTGTGCCATAATATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGCCTTTGTGTCCTCAGAAGACAATTATAGTGTGCCATAATATA  298

seq1  TTATCTTCTGTCACAATGAAGCTCCACGATACATGACAGCTTAGAAATGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCTGTCACAATGAAGCTCCACGATACATGACAGCTTAGAAATGC  348

seq1  CCTGCTTGACCCCCTCACAAGATATGCAAACAAAATGAACCAGCGCCTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGACCCCCTCACAAGATATGCAAACAAAATGAACCAGCGCCTAA  398

seq1  TATTCAGTTTCTTTGAGCTCCTGGGGAGGAGGCACATTTCACAGATAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTTTCTTTGAGCTCCTGGGGAGGAGGCACATTTCACAGATAATA  448

seq1  ATACTAATGCAGAAATGCTAACTTTGAGCCAGTGTTAACACATTGGGAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAATGCAGAAATGCTAACTTTGAGCCAGTGTTAACACATTGGGAAC  498

seq1  GCTGTTTGCTGGAAGCGGATAGAATTAAAACGCTGACATTCCTTGAGACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGCTGGAAGCGGATAGAATTAAAACGCTGACATTCCTTGAGACA  548

seq1  GCAAGTGTTTCCCATAGAACATTTGATAATTTTATTTCAGGGAAAACCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTTTCCCATAGAACATTTGATAATTTTATTTCAGGGAAAACCAC  598

seq1  GTAATATACATGTGTGTAACAAACGCTGAGTGTGATTCCAGTGAAGACCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATACATGTGTGTAACAAACGCTGAGTGTGATTCCAGTGAAGACCC  648

seq1  AGGTATGGCTTCCTCACGTTGATTGTTACTCATTTCCAACGCTTAATTAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGGCTTCCTCACGTTGATTGTTACTCATTTCCAACGCTTAATTAG  698

seq1  AAGTTTCTACGGTGTTTTAAGTAAAGTGGAAATGGCAGGCAGTCCCAGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTACGGTGTTTTAAGTAAAGTGGAAATGGCAGGCAGTCCCAGGC  748

seq1  TCTCTTGCTGCCTAACAAACCACACTCGAATTCAGCAATTCAAACCCACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCTGCCTAACAAACCACACTCGAATTCAGCAATTCAAACCCACT  798

seq1  ATTATGCAAAGCTTTCAGATTTGAGGAGTCATTAATTAAAGCAAGGTCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCAAAGCTTTCAGATTTGAGGAGTCATTAATTAAAGCAAGGTCAA  848

seq1  GAAGCAAAGTCTATGCTCCACCAAGTACTTATGGAGGCATCTCGACAGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAGTCTATGCTCCACCAAGTACTTATGGAGGCATCTCGACAGAG  898

seq1  GGGGACAAGATGGGTTTGGAGGTATCTTCCTTTATATTTCCAGCAGTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAGATGGGTTTGGAGGTATCTTCCTTTATATTTCCAGCAGTTTA  948

seq1  TGCTTGTTATTAACTATTATCTCATCTAGTCTATAAAGACAAGCATAACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTATTAACTATTATCTCATCTAGTCTATAAAGACAAGCATAACC  998

seq1  TCTCTCTGGGACTTTATCCACACCAGTCCACTTTGGGTTTCTCCTAGCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGGGACTTTATCCACACCAGTCCACTTTGGGTTTCTCCTAGCAT  1048

seq1  AGCAATAGGTCCCAGGTAAGGGGTTCTAAGAGAAAAAGGTGGAACTTAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGGTCCCAGGTAAGGGGTTCTAAGAGAAAAAGGTGGAACTTAGA  1098

seq1  CCATTTGGAATTC  1109
      |||||||||||||
seq2  CCATTTGGAATTC  1111

seq1: chr3_7220270_7220818
seq2: B6Ng01-093K12.g_576_1124 (reverse)

seq1  TAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACC  50
      ||||| ||||||  || |||||||| | ||| |  |||||||||||||||
seq2  TAAAGCCTTTTT--AGGTTAATGAATA-GAACCTCCAACGTACCCAAACC  47

seq1  TTTGGGACACAATGAAAGCATTTCTAAGAGGGAAAC-TCATAGCTATGAG  99
      ||| ||||||||||||||||||| |||||||||||| |||||||| ||||
seq2  TTTTGGACACAATGAAAGCATTT-TAAGAGGGAAACTTCATAGCTTTGAG  96

seq1  TGCCTTCAAGAAAAAACGGGAGA-GAGCACATACTAGCAGCTTGACAACA  148
      |||| ||||||| |||||||||| || ||||| ||||||||| | |||||
seq2  TGCC-TCAAGAAGAAACGGGAGAGGACCACAT-CTAGCAGCTGGCCAACA  144

seq1  CATCTAAAAGCTCTAG-AAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGT  196
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  CATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCCCAAGAGGAGT  194

seq1  AGACGGCAGGAAA-TAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA  245
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGACGGCAGGAAATTAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA  244

seq1  CAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAG  295
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  CAAGAAGAACTAATCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGGG  294

seq1  AAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAG  345
      |||   |||||||||||||||||||||||||||||||||| |||||||||
seq2  AAATCAAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAG  344

seq1  GGACAAA-ATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACA  394
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAACATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACA  394

seq1  ACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCT  444

seq1  ATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACA  494
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTAGACA  494

seq1  GATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGT  544
      ||||||||||||||||||| ||||||||||||||| ||  ||||||||||
seq2  GATACCAGGTACCAAAGTTAAATCAGGATCAAGTTAACGATCTAAACAGT  544

seq1  CCCAT  549
      |||||
seq2  CCCAT  549