BAC Information

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BAC

Clone NameB6Ng01-093L01
Chromosome14 (Build37)
Map Location 118,045,633 - 118,172,888
singlet/doubletdoublet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093L01.bB6Ng01-093L01.g
ACCDH905107DH905108
length1,135892
definitionDH905107|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L01, 5' end.DH905108|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,171,357 - 118,172,888)(118,045,633 - 118,046,513)
sequence
gaattcatttgcattcatttctcaccctgttaactggcatatcacttctc
tgctcacactgtctggggcccgatctaggttgtggctggagcaattactg
agctcagcagaggtaatgtgccacataaaatggcacagacacaggtcaag
gctgggcctagacactcctcagacataggaaacttacacaaaataatatc
tgtgtaaggcacaaataagtttcctattttttaaaagtatgtataataca
atacataaaattatacatatgtaagtacataattgtataataagctataa
tatacaacataatgatattataacagaatgttaagctatgttacaggtat
ataatataattataagctatagtatatactatttcaatgcatattatagc
ttattatagatttacatatatggttccaattatttctctaaagttttctt
ctgttttggcttcctctcccaatggtttctgttgtcaacatcctaagttc
tggagctacctaagagacaagcccatgggcgtatctgtgaggcagttcct
ggaataacttaactgaactgggaggagacccccctatctggaatcctgga
ccaaatgcaaagaagagagctgggtgcaacgttcacctctgccccctgac
ttcagctacagtgtgaccagctgtctccagctcctgctgctaaggcctgc
caaccatgaaggattgggagctaaaataaaccttcctctggtgagcaact
tctcgtcagtcctctttgccatagcaataagggacgtaggtaactaagaa
acttctctgctggaccccaagccccgtaagtaaggctttatctgccacca
gcagcagtgctcggttattccagttgaacataatgttaggattaattctt
agatttgaattaatataaaagactaggcgggtggataagataccctgttt
taaattaaaacttgtatagcaagtcacaatattttagaaaattgtctttt
tttgggggcggggggagtggctgaggtccagtaagaccacaatacttatg
ctaaagaaaggaaaaacaaaagaaaacaaacactaggttatggtgcctcc
ctcctgccccattatctgttccattctttctctcc
gaattctcagcagcatgtccttcagagtttgctccgcacactttagccag
taagcgtgcattgaaacatccatgtttctgatctatatatttctctatat
tcctcttccaaaccaaatcttcattcgtctaaggccttgtttgaggcatg
aaattaattctgtgggtcttaatccatcagagtcagagcctaaaagccca
actgtaaatggtcctccttaaagctcttaccctagtcactgaggaggctg
gaggcggaaacgccctgttcctccttcgctccatctccaccctcgctaat
gtggcaccccacatggacaaccactttagagagctgaggccttatctccc
atttgctcagtgttcagttgctgccaaatgagcatgtcagaaaggttttt
agaggatcttaagaccagtggcttcatttttgaagagaacgactgtcatg
ggccattgacaggatcaccacatcttagcaacagaagcgcaggaaattgt
gcagacacatcgtggttctgctgctcggtgtagctaaactctctaactac
gttcagggcagatggaatggaagcagcgcttttcaacccagatactgaat
tccaaactggaattccgtgagacccttggtagttttaattccaaaggcaa
tttggatggataattgtctctaaagggtctgggttggagagatatctgct
tgtgaaatgcaatagggactatagttaccattcacaaataatgggtttgt
gtctgtgtacagtcttggtgcatgcatgcatgtatatgtgtgtgtggagg
ggacaactctgggtatgtgtgtgtgtgcccgtttgcatgtgcttgtgctt
gtgcgtgtccgtgtgcatgtgtgtgttgggtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118171357_118172888
seq2: B6Ng01-093L01.b_47_1181 (reverse)

seq1  GGAGAGAAAGAACATAAAGACCTGAGGAGGAAAAGAGAGGAGGCTCAGCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTAGAGTACCATAGCTCTTCCAAAAGATCTGGACCAACATGGTGGCTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACAACCATCTATAACTCCAGTTCCTAGAAATCTGACACCCTCCGCTGACA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGAAGCCACTAGGTCACATGCATCATGATGGGTGTACATACATGCAGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAAACAGAAAGGCACATGAAACAAATAAATAAATCTAAAAATAATTTTTA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGGAAAACTGAAATAGGCTTGCATCCAGCCATAAATTGTCCTAAAATG  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGAATCCTAACTTCTCAAGCTTAACTAGCTCCACTCTTTATCAACAGTGT  350
                                                        
seq2  --------------------------------------------------  0

seq1  GGATCAAAGCAGAAATTATAGATTCAAATTCATGGTAGAAGAAAGAAAAG  400
                                        | || ||||||||  |
seq2  ----------------------------------GGAG-AGAAAGAATGG  15

seq1  GAAAACAGAATAATGAGGCAGGAGGGAGGCCACATAACCTAGTTGTTTTG  450
         ||||| |||||| ||||||||||||||  |||||||||||   ||||
seq2  ---AACAG-ATAATGGGGCAGGAGGGAGGCACCATAACCTAGT--GTTTG  59

seq1  TTTTCTTTTGTTTTTCTTTTTCTTTTAGCATAAAGTATTGTGGTCTTACT  500
      |||||||||||||||| |||   |||||||| ||||||||||||||||||
seq2  TTTTCTTTTGTTTTTCCTTT--CTTTAGCAT-AAGTATTGTGGTCTTACT  106

seq1  GGACCTCAGCCACT-CCCCCGCCCCCAAAAAAAGACAATTTTTCTAAAAT  549
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  GGACCTCAGCCACTCCCCCCGCCCCCAAAAAAAGACAA-TTTTCTAAAAT  155

seq1  ATTGTGACTTGCTTATACAAGTTTTAATTTTAAAAACAGGGTATCTTATC  599
      |||||||||||| |||||||||||||||||  ||||||||||||||||||
seq2  ATTGTGACTTGC-TATACAAGTTTTAATTT--AAAACAGGGTATCTTATC  202

seq1  CACCCGCCTAGTCTTTTATATTAATTCAAATCTAAGAATTAATCCTAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGCCTAGTCTTTTATATTAATTCAAATCTAAGAATTAATCCTAACA  252

seq1  TTATGTTCAACTGGAATAACCGAGCACTGCTGCTGGTGGCAGATAAAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCAACTGGAATAACCGAGCACTGCTGCTGGTGGCAGATAAAGCC  302

seq1  TTACTTACGGGGCTTGGGGTCCAGCAGAGAAGTTTCTTAGTTACCTACGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACGGGGCTTGGGGTCCAGCAGAGAAGTTTCTTAGTTACCTACGT  352

seq1  CCCTTATTGCTATGGCAAAGAGGACTGACGAGAAGTTGCTCACCAGAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATTGCTATGGCAAAGAGGACTGACGAGAAGTTGCTCACCAGAGGA  402

seq1  AGGTTTATTTTAGCTCCCAATCCTTCATGGTTGGCAGGCCTTAGCAGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTTTAGCTCCCAATCCTTCATGGTTGGCAGGCCTTAGCAGCAG  452

seq1  GAGCTGGAGACAGCTGGTCACACTGTAGCTGAAGTCAGGGGGCAGAGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAGACAGCTGGTCACACTGTAGCTGAAGTCAGGGGGCAGAGGTG  502

seq1  AACGTTGCACCCAGCTCTCTTCTTTGCATTTGGTCCAGGATTCCAGATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTGCACCCAGCTCTCTTCTTTGCATTTGGTCCAGGATTCCAGATAG  552

seq1  GGGGGTCTCCTCCCAGTTCAGTTAAGTTATTCCAGGAACTGCCTCACAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCTCCTCCCAGTTCAGTTAAGTTATTCCAGGAACTGCCTCACAGA  602

seq1  TACGCCCATGGGCTTGTCTCTTAGGTAGCTCCAGAACTTAGGATGTTGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCCATGGGCTTGTCTCTTAGGTAGCTCCAGAACTTAGGATGTTGAC  652

seq1  AACAGAAACCATTGGGAGAGGAAGCCAAAACAGAAGAAAACTTTAGAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAACCATTGGGAGAGGAAGCCAAAACAGAAGAAAACTTTAGAGAA  702

seq1  ATAATTGGAACCATATATGTAAATCTATAATAAGCTATAATATGCATTGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGGAACCATATATGTAAATCTATAATAAGCTATAATATGCATTGA  752

seq1  AATAGTATATACTATAGCTTATAATTATATTATATACCTGTAACATAGCT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATATACTATAGCTTATAATTATATTATATACCTGTAACATAGCT  802

seq1  TAACATTCTGTTATAATATCATTATGTTGTATATTATAGCTTATTATACA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCTGTTATAATATCATTATGTTGTATATTATAGCTTATTATACA  852

seq1  ATTATGTACTTACATATGTATAATTTTATGTATTGTATTATACATACTTT  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTACTTACATATGTATAATTTTATGTATTGTATTATACATACTTT  902

seq1  TAAAAAATAGGAAACTTATTTGTGCCTTACACAGATATTATTTTGTGTAA  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAGGAAACTTATTTGTGCCTTACACAGATATTATTTTGTGTAA  952

seq1  GTTTCCTATGTCTGAGGAGTGTCTAGGCCCAGCCTTGACCTGTGTCTGTG  1399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTATGTCTGAGGAGTGTCTAGGCCCAGCCTTGACCTGTGTCTGTG  1002

seq1  CCATTTTATGTGGCACATTACCTCTGCTGAGCTCAGTAATTGCTCCAGCC  1449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTATGTGGCACATTACCTCTGCTGAGCTCAGTAATTGCTCCAGCC  1052

seq1  ACAACCTAGATCGGGCCCCAGACAGTGTGAGCAGAGAAGTGATATGCCAG  1499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTAGATCGGGCCCCAGACAGTGTGAGCAGAGAAGTGATATGCCAG  1102

seq1  TTAACAGGGTGAGAAATGAATGCAAATGAATTC  1532
      |||||||||||||||||||||||||||||||||
seq2  TTAACAGGGTGAGAAATGAATGCAAATGAATTC  1135

seq1: chr14_118045633_118046513
seq2: B6Ng01-093L01.g_66_957

seq1  GAATTCTCAGCAGCATGTCCTTCAGAGTTTGCTCCGCACACTTTAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAGCATGTCCTTCAGAGTTTGCTCCGCACACTTTAGCCAG  50

seq1  TAAGCGTGCATTGAAACATCCATGTTTCTGATCTATATATTTCTCTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCGTGCATTGAAACATCCATGTTTCTGATCTATATATTTCTCTATAT  100

seq1  TCCTCTTCCAAACCAAATCTTCATTCGTCTAAGGCCTTGTTTGAGGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCAAACCAAATCTTCATTCGTCTAAGGCCTTGTTTGAGGCATG  150

seq1  AAATTAATTCTGTGGGTCTTAATCCATCAGAGTCAGAGCCTAAAAGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTCTGTGGGTCTTAATCCATCAGAGTCAGAGCCTAAAAGCCCA  200

seq1  ACTGTAAATGGTCCTCCTTAAAGCTCTTACCCTAGTCACTGAGGAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAATGGTCCTCCTTAAAGCTCTTACCCTAGTCACTGAGGAGGCTG  250

seq1  GAGGCGGAAACGCCCTGTTCCTCCTTCGCTCCATCTCCACCCTCGCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGAAACGCCCTGTTCCTCCTTCGCTCCATCTCCACCCTCGCTAAT  300

seq1  GTGGCACCCCACATGGACAACCACTTTAGAGAGCTGAGGCCTTATCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACCCCACATGGACAACCACTTTAGAGAGCTGAGGCCTTATCTCCC  350

seq1  ATTTGCTCAGTGTTCAGTTGCTGCCAAATGAGCATGTCAGAAAGGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCAGTGTTCAGTTGCTGCCAAATGAGCATGTCAGAAAGGTTTTT  400

seq1  AGAGGATCTTAAGACCAGTGGCTTCATTTTTGAAGAGAACGACTGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCTTAAGACCAGTGGCTTCATTTTTGAAGAGAACGACTGTCATG  450

seq1  GGCCATTGACAGGATCACCACATCTTAGCAACAGAAGCGCAGGAAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGACAGGATCACCACATCTTAGCAACAGAAGCGCAGGAAATTGT  500

seq1  GCAGACACATCGTGGTTCTGCTGCTCGGTGTAGCTAAACTCTCTAACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACATCGTGGTTCTGCTGCTCGGTGTAGCTAAACTCTCTAACTAC  550

seq1  GTTCAGGGCAGATGGAATGGAAGCAGCGCTTTTCAACCCAGATACTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGGCAGATGGAATGGAAGCAGCGCTTTTCAACCCAGATACTGAAT  600

seq1  TCCAAACTGGAATTCCGTGAGACCCTTGGTAGTTTTAATTCCAAAGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTGGAATTCCGTGAGACCCTTGGTAGTTTTAATTCCAAAGGCAA  650

seq1  TTTGGATGGATAATTGTCTCTAAAGGGTCTGGGTTGGAGAGATATCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGGATAATTGTCTCTAAAGGGTCTGGGTTGGAGAGATATCTGCT  700

seq1  TGTGAAATGCAATAGGGACTATAGTTACCATTCACAAATAATGGGTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATGCAATAGGGACTATAGTTACCATTCACAAATAATGGGTTTGT  750

seq1  GTCTGTGTACAGTCTTGGTGCATGCATGCATGTATATGTGTGTGTGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTACAGTCTTGGTGCATGCATGCATGTATATGTGTGTGTGGAGG  800

seq1  GGACAACTCTGGGTATGTGTGTGTGTGCGCGTGTGCGTGTGCGTGTGCGT  850
      |||||||||||||||||||||||||||| ||| ||| ||||| ||||| |
seq2  GGACAACTCTGGGTATGTGTGTGTGTGCCCGTTTGCATGTGCTTGTGCTT  850

seq1  GTGCGTGTGCGTGTGCATGTGTGTG-TGTGTG----------  881
      |||||||| |||||||||||||||| || |||          
seq2  GTGCGTGTCCGTGTGCATGTGTGTGTTGGGTGTGTGTGTGTG  892