BAC Information

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BAC

Clone NameB6Ng01-094I16
Chromosome14 (Build37)
Map Location 93,460,547 - 93,461,637
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneEG665377, LOC638252
Downstream geneLOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094I16.bB6Ng01-094I16.g
ACCDH905736DH905737
length1,1951,068
definitionDH905736|Mus musculus domesticus DNA, BAC clone: B6Ng01-094I16, 5' end.DH905737|Mus musculus domesticus DNA, BAC clone: B6Ng01-094I16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataactcacttaaagagatacaggagaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcaa
cggtggagatagaaaccataggaaagaaatctggaaccatagatgccagc
atcagcaacagaatacaagagatggaaaagagaatctcaggtgcagaaga
ctccatagagaacattggcacaacaatcaaagaaaatggaaaatgcaaaa
agatcctaactgaaaacttccaggaaatccaggacacaatgagaagacca
aacctacggataataggagtggatgagaatgaagattttcaactcaaagg
accagcaaacatcttcaacaaaattattgaagaaaacttcccaaatgtaa
agaaagagatgcccatgaacatacaagaagcctacagaactccaaataga
ctggaccagaaaagaaattcctcccgacacataataatcagaacatcaaa
tgcactaaataaagatagaatactaaaagcagtaagggaaaaaggtcaag
taacatataaaggcaagcctatcagaattacaccagatttttcaccagag
actatgaaagccagaagagcctggacagatgttatacagacactaagaga
acataaatgccagcccaagcgactatacccagccaaactctcaattacca
tagatggagaaaccaaagtattccacgacaaaactaaattcacccattat
ctctccacgaatccagcccttcaaaggataataacagaaaaaaccaatac
agacgggaatcacgccctagaaaaaacagaagataatccttacaacctaa
agaagaagcacaagaaaagaatggtactttaacaacaaaaataacaggag
caacatacgttctaatatctctaaatcaatggactcattcccataaaaga
catgactaccgactggataccaacggaccacattctggcgtctaggaatc
cattcagaaagacagactatctcagtgaagctgaacatttctcag
gaattcaactcccctgaaagtaaacgatatgcatgtttgtggtgaaagtt
ctcattaatgatctcacaacataagctgccaagaatctgccagtgtttca
agttacggttatttggagttgtttttctgccaatatgaaaattggttttg
tgatattgtttattgctgcatctttgcaactttttttttaaccctccacc
gaggaatacttctgttctgcaaaagcaacggaagctaaaaagatagaatg
ttttcatgtcagaaaaattaaagtcataaaggagatagatttccagaatt
aaattagaattgaacaagtcagttatgtgtgcatccatcagcccagtggt
caggatctcatttccactgaagcaacttagctggagggcagagagaattt
cttacacagagaaacccctacacacacctatcactataaattattctgag
gagacagaacactcacatgccattgagtataatagcttgaaaagggtact
catctacttgagagagctgttgagttttcaatgtaacctaaataggtata
aaacaaaatattaaaatctatcacaatacatagaaatgttttcttccagc
acagaacttttgggttgtatctactcttcaccacaatacaaataatgaac
acgctcaccttagctattcattgtcaaaaatgtgtaaattagtgctcatg
agtgatagtgggataggcaatgcctttgaatcacatgtcagcctgcaaat
gcattcgatgtaaggacaaatgttataattttttttcctaggctaaagga
agtaggaaagaaatagaagtcggcaaggagtcaaatggagccatcacatg
ttggctgtgtggtataagtatatataatatatctatattatagataatag
gaggtcaactgggaaatatattgttgtgaggtccagaacattgatctata
gagataaatcaccacagatcagtcatcacatgtctttcatacaatttgaa
gtcttttgtcatattcttatcgacctttgagctgaagggcagaaattctc
cgaaggtatggcaaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93460547_93461637
seq2: B6Ng01-094I16.g_66_1133 (reverse)

seq1  AACCTTTGCCATAACTTTTCGAGAGAATTTCTGCCCTTCAAAGCTCAAAG  50
      |||| |||||||| |  |||| |||||||||||||||||  |||||||||
seq2  AACC-TTGCCATACC--TTCG-GAGAATTTCTGCCCTTC--AGCTCAAAG  44

seq1  TTCGGATAAGAATATGACAAAAGACTTCAAAAATGTAATGAAAGAACATG  100
       || |||||||||||||||||||||||| ||| ||| ||||||| |||||
seq2  GTC-GATAAGAATATGACAAAAGACTTC-AAATTGT-ATGAAAG-ACATG  90

seq1  TTGGAATGACTGAATTCTGTGGTGATTTTAATCTTCTATAGGATTCAAAT  150
      |    ||||||||  |||||||||||||  ||| |||||| |||   |||
seq2  T---GATGACTGA--TCTGTGGTGATTT--ATC-TCTATA-GAT--CAAT  129

seq1  GGTCTGGACCCTCACAAACAATATATTT-CCAGTTGAACCTCCTATTATC  199
      | |||||| |||||| |||||||||||| ||||||| |||||||||||||
seq2  GTTCTGGA-CCTCAC-AACAATATATTTCCCAGTTG-ACCTCCTATTATC  176

seq1  TATAATATAGATATATTATATATACTTATACCACACAGCCAACATGTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATAGATATATTATATATACTTATACCACACAGCCAACATGTGAT  226

seq1  GGCTCCATTTGACTCCTTGCCGACTTCTATTTCTTTCCTACTTCCTTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATTTGACTCCTTGCCGACTTCTATTTCTTTCCTACTTCCTTTAG  276

seq1  CCTAGGGAAAAAAATTATAACATTTGTCCTTACATCGAATGCATTTGCAG  349
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAAAAAAAATTATAACATTTGTCCTTACATCGAATGCATTTGCAG  326

seq1  GCTGACATGTGATTCAAAGGCATTGCCTATCCCACTATCACTCATGAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACATGTGATTCAAAGGCATTGCCTATCCCACTATCACTCATGAGCA  376

seq1  CTAATTTACACATTTTTGACAATGAATAGCTAAGGTGAGCGTGTTCATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTACACATTTTTGACAATGAATAGCTAAGGTGAGCGTGTTCATTA  426

seq1  TTTGTATTGTGGTGAAGAGTAGATACAACCCAAAAGTTCTGTGCTGGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTGTGGTGAAGAGTAGATACAACCCAAAAGTTCTGTGCTGGAAG  476

seq1  AAAACATTTCTATGTATTGTGATAGATTTTAATATTTTGTTTTATACCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTCTATGTATTGTGATAGATTTTAATATTTTGTTTTATACCTA  526

seq1  TTTAGGTTACATTGAAAACTCAACAGCTCTCTCAAGTAGATGAGTACCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTACATTGAAAACTCAACAGCTCTCTCAAGTAGATGAGTACCCT  576

seq1  TTTCAAGCTATTATACTCAATGGCATGTGAGTGTTCTGTCTCCTCAGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCTATTATACTCAATGGCATGTGAGTGTTCTGTCTCCTCAGAAT  626

seq1  AATTTATAGTGATAGGTGTGTGTAGGGGTTTCTCTGTGTAAGAAATTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATAGTGATAGGTGTGTGTAGGGGTTTCTCTGTGTAAGAAATTCTC  676

seq1  TCTGCCCTCCAGCTAAGTTGCTTCAGTGGAAATGAGATCCTGACCACTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTCCAGCTAAGTTGCTTCAGTGGAAATGAGATCCTGACCACTGG  726

seq1  GCTGATGGATGCACACATAACTGACTTGTTCAATTCTAATTTAATTCTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGGATGCACACATAACTGACTTGTTCAATTCTAATTTAATTCTGG  776

seq1  AAATCTATCTCCTTTATGACTTTAATTTTTCTGACATGAAAACATTCTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATCTCCTTTATGACTTTAATTTTTCTGACATGAAAACATTCTAT  826

seq1  CTTTTTAGCTTCCGTTGCTTTTGCAGAACAGAAGTATTCCTCGGTGGAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGCTTCCGTTGCTTTTGCAGAACAGAAGTATTCCTCGGTGGAGG  876

seq1  GTTAAAAAAAAAGTTGCAAAGATGCAGCAATAAACAATATCACAAAACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAAAAAGTTGCAAAGATGCAGCAATAAACAATATCACAAAACCA  926

seq1  ATTTTCATATTGGCAGAAAAACAACTCCAAATAACCGTAACTTGAAACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATATTGGCAGAAAAACAACTCCAAATAACCGTAACTTGAAACAC  976

seq1  TGGCAGATTCTTGGCAGCTTATGTTGTGAGATCATTAATGAGAACTTTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATTCTTGGCAGCTTATGTTGTGAGATCATTAATGAGAACTTTCA  1026

seq1  CCACAAACATGCATATCGTTTACTTTCAGGGGAGTTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACATGCATATCGTTTACTTTCAGGGGAGTTGAATTC  1068