BAC Information

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BAC

Clone NameB6Ng01-095E04
Chromosome14 (Build37)
Map Location 19,827,161 - 19,953,049
singlet/doubletdoublet
Overlap geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
Downstream geneEG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095E04.bB6Ng01-095E04.g
ACCDH906249DH906250
length1,0351,162
definitionDH906249|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E04, 5' end.DH906250|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,827,161 - 19,828,069)(19,951,866 - 19,953,049)
sequence
gaattctttatatatattggatattagtcccctatctgatttaagatagg
taaagatcctttcccaatctgctggtggcctttttgtcttattgacggtg
tcttttgccttgcagaagctttgcagtttcatgaggtcccatttgtcaat
cctcgatcttacagcacaagccattgctgttctgttcaggaatttttccc
ctgtgcccatatcttcgaggcttttccccactttctcctctataagtttc
agtgtctctggtttcgtgtgaagttccttgatccacttagatttgacctt
agtacaagaagataggaatggaccgattcacattcttctacatgataaca
accagttgtgccagcaccatttgttgaaaatgctgtctttcttccactgg
atggttttagctcccttgtcgaagatcaagtgaccataggtgtgtgggtt
catttctgggtcttcaattctattccattgatctacttgtctgtcactat
accagtaccatgcagtttttatcacaattgctctgtagtaaagctttagg
tcaggcatggtgattctaccagaggtacttttatccttgagaagagtttt
tgctattctaggttttttgttattccagagtaactcacttctttagaaca
ttatcatatatgatttcctcttaaatcatttgcctactttaccttccttt
tcaggaaacaaaataagagcccaagactccacaagcaaaacaagaaatat
ccatagtgattcattttaatctcctagattacttggaggaacataataca
tactattcatgaagcatttcctcctactttttaaataagaagctacagta
tttgtgggcaatcctcaagttacattgtgcaccataaccactgtgagatg
tgtgttaaatgcatccgtgtcccaggccttctggtataccattctgggca
ctcatgccctagttggtagctgtgttctcagcagcacagtgctatgttta
caagatgaaatatcttccgatgatttgtgattatc
gaattcattaggcatgataggtttttctgtgactgtggtaccagaatact
gtccaatccttgtacattagctggtgagcctacacaggatacagataacg
tcatgtgactctgctccacctgtaacatctcatatgttgcagaacaattg
aattccttccctaaagaaaaagtcctgctattcaaacataacttaaaaca
tctttgggaagataaaatacttgcccgtgctacagaatgagactctactg
agaaaaatggatatacaaggtcagctgtcactatgaaactcaagctacca
aaaagaaagtggcattatattgactcaggatctcagagctcaggatttta
gctttactgcgtaaaagttttgaagggacagaagtgaagaaataagccac
acttttgtacatataccaacttctgaaaacgttggtgtctttacaatgag
cattaaatgcagtctgatttgcagtagtaatcttcaatagataagttgct
ttgttgctgcctttatggacatgggtatcaattgcttttggtaatatggt
aaaaatgtgagctagcacttctgcattgattttataacatgtattcagat
tgagaatgtgattttaatgcttaaacctcatggagtttgtttttaatttc
aaacaaatcttattgtgcttgaatgtgctctggtttgttagcacacctag
acttgctgtaactgcactcatgtaacagtatgtaccttccctctaggaaa
gagaaaaacactagccttaggttgtatctagtgattttccttgtgtcctt
taagaaaaaataagactattatttccttccctttcctgtgcagcattcaa
aaatcacccctagaaaagtgagtgctttaatgagacttcctaggaaggga
tgcaaggtgaaacaaaagtatgcttgtttctagttttgtgaaagttaaag
ctactatgtttaaagtatatttagaagtcttcttcaaaacagactatatt
taactctatcaatagttttttatttgaacagtttagacaaattgctgaaa
ttacagcattctgcatagcagtacaataaccgctcttatcagcttcatag
cacctgcccacccatttaggtgtactggtgatggcataaaatctgaggta
tgccatgtacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_19827161_19828069
seq2: B6Ng01-095E04.b_175_1073

seq1  GAGGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTC  50

seq1  TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACT  100

seq1  TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTCGTGTGAAGTTCCTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTCGTGTGAAGTTCCTTGAT  150

seq1  CCACTTAGATTTGACCTTAGTACAAGAAGATAGGAATGGACCGATTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAGATTTGACCTTAGTACAAGAAGATAGGAATGGACCGATTCACA  200

seq1  TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATG  250

seq1  CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG  300

seq1  ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGAT  350

seq1  CTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCT  400

seq1  CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCTACCAGAGGTACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCTACCAGAGGTACTTTT  450

seq1  ATCCTTGAGAAGAGTTTTTGCTATTCTAGGTTTTTTGTTATTCCAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGAGAAGAGTTTTTGCTATTCTAGGTTTTTTGTTATTCCAGAGTA  500

seq1  ACTCACTTCTTTAGAACATTATCATATATGATTTCCTCTTAAATCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTCTTTAGAACATTATCATATATGATTTCCTCTTAAATCATTTG  550

seq1  CCTACTTTACCTTCCTTTTCAGGAAACAAAATAAGAGCCCAAGACTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTACCTTCCTTTTCAGGAAACAAAATAAGAGCCCAAGACTCCAC  600

seq1  AAGCAAAACAAGAAATATCCATAGTGATTCATTTTAATCTCCTAGATTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACAAGAAATATCCATAGTGATTCATTTTAATCTCCTAGATTAC  650

seq1  TTGGAGGAACATAATACATACTATTCATGAAGCATTTCCTCCTACTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAACATAATACATACTATTCATGAAGCATTTCCTCCTACTTTTT  700

seq1  AAATAAGAAGCTACAGTATTTGTGGGCAATCCTCAAGTTACATTGTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAGCTACAGTATTTGTGGGCAATCCTCAAGTTACATTGTGCAC  750

seq1  CATAACCACTGTGAGATGTGTGTTAAATGCATCCGTGTCCCAGGCCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCACTGTGAGATGTGTGTTAAATGCATCCGTGTCCCAGGCCTTCT  800

seq1  GGTATACCATTCTGGGCACTCATGCCCTAGTTGGTAGCTGTGGTTTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  GGTATACCATTCTGGGCACTCATGCCCTAGTTGGTAGCTGTG--TTCTCA  848

seq1  AGGCAGCACAGTGGCCTATGTTTTACAAAGATGAAATATCTTCCCGATGA  900
        |||||||||||  ||||| ||||| ||||||||||||||| |||||| 
seq2  --GCAGCACAGTG--CTATG-TTTAC-AAGATGAAATATCTT-CCGATG-  890

seq1  ATTTGTGAT  909
      |||||||||
seq2  ATTTGTGAT  899

seq1: chr14_19951866_19953049
seq2: B6Ng01-095E04.g_68_1229 (reverse)

seq1  TGGTACAT-GCATACACTTTCAGGATTTTTATGCCCACTTTCACCAGTAC  49
      |||||||| ||||||    ||||   |||||||||     ||||||||||
seq2  TGGTACATGGCATAC---CTCAG--ATTTTATGCC----ATCACCAGTAC  41

seq1  ACATAAATGGGTGTGGCAGGTGCTATGAAGCTGAATAGAGCTGTATATGT  99
      || |||||||||| ||||||||||||||||||||  ||||| ||   |||
seq2  ACCTAAATGGGTG-GGCAGGTGCTATGAAGCTGATAAGAGCGGTTATTGT  90

seq1  ACTGCTTAATGCAGGAAATTGCTGTAATTTCCAGCAATTTTGTCTAAACT  149
      ||||||  ||||||   | ||||||||||| |||||| ||||||||||||
seq2  ACTGCT--ATGCAG---AATGCTGTAATTT-CAGCAA-TTTGTCTAAACT  133

seq1  GTTCAAATAAAAAACTATGAATAGAGTTAAAATATAGGTCTGTTTTGAAG  199
      ||||||||||||||||||  |||||||| ||||||| |||||||||||||
seq2  GTTCAAATAAAAAACTATTGATAGAGTT-AAATATA-GTCTGTTTTGAAG  181

seq1  -AGACTTTCTAAATTATACTTTAAAACATAGTAGCTTTAACTTTCACAAA  248
       |||| ||||||| |||||||| |||||||||||||||||||||||||||
seq2  AAGAC-TTCTAAA-TATACTTT-AAACATAGTAGCTTTAACTTTCACAAA  228

seq1  ACTAAGAAACAAGCATACTTTTGTTTCACCTTGCATCCCTTCCTAGGAAG  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACT-AGAAACAAGCATACTTTTGTTTCACCTTGCATCCCTTCCTAGGAAG  277

seq1  TCTCATTAAAGCACTCACTTTTTCTAGGGGTGATTTTTGAATGCTGCACA  348
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTCATTAAAGCACTCAC-TTTTCTAGGGGTGATTTTTGAATGCTGCACA  326

seq1  GGAAAGGGAAGGAAATAATAGTCTTATTTTTTCTTAAAGGACACAAGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGAAGGAAATAATAGTCTTATTTTTTCTTAAAGGACACAAGGAA  376

seq1  AATCACTAGATACAACCTAAGGCTAGTGTTTTTCTCTTTCCTAGAGGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTAGATACAACCTAAGGCTAGTGTTTTTCTCTTTCCTAGAGGGAA  426

seq1  GGTACATACTGTTACATGAGTGCAGTTACAGCAAGTCTAGGTGTGCTAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATACTGTTACATGAGTGCAGTTACAGCAAGTCTAGGTGTGCTAAC  476

seq1  AAACCAGAGCACATTCAAGCACAATAAGATTTGTTTGAAATTAAAAACAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAGCACATTCAAGCACAATAAGATTTGTTTGAAATTAAAAACAA  526

seq1  ACTCCATGAGGTTTAAGCATTAAAATCACATTCTCAATCTGAATACATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGAGGTTTAAGCATTAAAATCACATTCTCAATCTGAATACATGT  576

seq1  TATAAAATCAATGCAGAAGTGCTAGCTCACATTTTTACCATATTACCAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATCAATGCAGAAGTGCTAGCTCACATTTTTACCATATTACCAAA  626

seq1  AGCAATTGATACCCATGTCCATAAAGGCAGCAACAAAGCAACTTATCTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGATACCCATGTCCATAAAGGCAGCAACAAAGCAACTTATCTAT  676

seq1  TGAAGATTACTACTGCAAATCAGACTGCATTTAATGCTCATTGTAAAGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTACTACTGCAAATCAGACTGCATTTAATGCTCATTGTAAAGAC  726

seq1  ACCAACGTTTTCAGAAGTTGGTATATGTACAAAAGTGTGGCTTATTTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACGTTTTCAGAAGTTGGTATATGTACAAAAGTGTGGCTTATTTCTT  776

seq1  CACTTCTGTCCCTTCAAAACTTTTACGCAGTAAAGCTAAAATCCTGAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGTCCCTTCAAAACTTTTACGCAGTAAAGCTAAAATCCTGAGCT  826

seq1  CTGAGATCCTGAGTCAATATAATGCCACTTTCTTTTTGGTAGCTTGAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCCTGAGTCAATATAATGCCACTTTCTTTTTGGTAGCTTGAGTT  876

seq1  TCATAGTGACAGCTGACCTTGTATATCCATTTTTCTCAGTAGAGTCTCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGACAGCTGACCTTGTATATCCATTTTTCTCAGTAGAGTCTCAT  926

seq1  TCTGTAGCACGGGCAAGTATTTTATCTTCCCAAAGATGTTTTAAGTTATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCACGGGCAAGTATTTTATCTTCCCAAAGATGTTTTAAGTTATG  976

seq1  TTTGAATAGCAGGACTTTTTCTTTAGGGAAGGAATTCAATTGTTCTGCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAGCAGGACTTTTTCTTTAGGGAAGGAATTCAATTGTTCTGCAA  1026

seq1  CATATGAGATGTTACAGGTGGAGCAGAGTCACATGACGTTATCTGTATCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAGATGTTACAGGTGGAGCAGAGTCACATGACGTTATCTGTATCC  1076

seq1  TGTGTAGGCTCACCAGCTAATGTACAAGGATTGGACAGTATTCTGGTACC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGCTCACCAGCTAATGTACAAGGATTGGACAGTATTCTGGTACC  1126

seq1  ACAGTCACAGAAAAACCTATCATGCCTAATGAATTC  1184
      ||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACAGAAAAACCTATCATGCCTAATGAATTC  1162