BAC Information

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BAC

Clone NameB6Ng01-095O11
Chromosome14 (Build37)
Map Location 123,191,304 - 123,337,111
singlet/doubletdoublet
Overlap genePcca, BC006662, 4930594M22Rik, Tmtc4
Upstream geneLOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
Downstream geneVgcnl1, Itgbl1, LOC668700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095O11.bB6Ng01-095O11.g
ACCDH906715DH906716
length1,1371,100
definitionDH906715|Mus musculus domesticus DNA, BAC clone: B6Ng01-095O11, 5' end.DH906716|Mus musculus domesticus DNA, BAC clone: B6Ng01-095O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,335,968 - 123,337,111)(123,191,304 - 123,192,438)
sequence
gaattcagccctaatagactggaaactgagggtacacacatgggcatcac
ttagtcatgagcatgtatgtttttctttttaacttggggtacacataaag
acctcaagtgtcatgataatcattctttctctagagcttttctcaattat
gccatttaatgtaagcatgatagaatttatgtttgtcttaaatggttctc
tatgcactgaagtgtctaattgtctttttcttcttttcaaaaagcttgtg
ttgatcgcagtttctccctttggaaactgctgtgtccttttgattcctct
gcatgggattcgttttctgttctggcctccactcagtagcctctgaatat
tacagttggcacctagctattgttcagacccagatatataaactgagact
cactttttttttttttttgaaagattgaggtatcagggtaggtagtcctt
ggcctgcattgatattacccacagtgtcttgaaggtgataagtgcccaat
attagttattgaattggtccaaatggaaactgtgttcataaagcctactg
tgtgagagattccaagtactgaatttattgggacttactttagtttttaa
gatttagacatatgttgtatttaatgtcaaccccatgatacagtgctaag
ttaacaaagaaaggatcatgtagcacttgaaggtattcccttaaagatga
acatgaatctttatgtgtttatacgttttagctttagcaatcttcaacct
cagcagaatatttgggacttttaatggtattagaagtgcctctcattgtg
ggcacttctgcttgtttcctacgtttgtcacttggtggcagtggctgttt
taatctggcttcattgtcttagcatatgatatgcaaaggctggaggaaaa
gttgggtaactgggctcttttctgtctacatggaacaaaaatccccattt
tctaactgctactaaagtagctgtggtcagtttgttttctgaattatcag
cccaaatttagcagcggttttcttttcaaagaattctctgttcaatctaa
agaagaaagagaggaaatgtcttcttaaatttggaatgcttctaggcccg
aaatcatattttctaactatcattaataactggctgc
gaattctttgtttagctctgtatcccatttttaaatagggttatttgttt
ctctggagtctaacttcttgagttctttgtatatattggatattagccca
ctatcagatttaggatttttaaagatctttgactttctctagcacatgcc
ccaggaagttagtattgtaatttgagaagctcatcccccaaccccaatgg
cttcctattagcagttaccttgaacacaagagttgatagcatgttctttg
taatccgtgacctctatttaaagtagaaacccatggagctaagcctccat
gggcacttcatactgaggtcagaggctcctggaaaaccaaacactaaaca
aaaccacaggaaaatgtggctcttacatatgaataggaattttcaatctc
tcatagcatcaaatgctggtttttaaactcaattttatgtagaaaaccaa
agaatcacatctgttttatgtttcatctatacctgtctctattaagagac
tgtgagtcagaggactcagactctgaaatagatatctgaggactgattag
tctctaagattgttgtgttatctctgtaggtctaagagggctttaactct
tagtactcaacctgatattttggcttctctatgcatactaattttcttct
ataccctaactctttgcttcattttttctaccttataaataagttatgag
atgaaagtatttgagaccattgaacgatatatcgctacatgcttttcaca
ctacttaaatccatttgatgggctcagagatgtggtttagtggcagaatg
cttgtctagcatggccaacaaacaccctgaatttgattctagcattgcct
aaaccaagtgtgatggtgcatttgtataatcctggcactcggaatcggaa
gagagagatgagagctcagggcctctagctgagagagttgagacagctgg
gatgcatgtgtcctgtctaccagcagcacacagcacaaacaaccatactg
gagagtgaatagattaataatctgtgctataatcttaacacagtggtcat
tacaattttttgttgacatgtgtggcattagtactggactgttgtgtatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123335968_123337111
seq2: B6Ng01-095O11.b_50_1186 (reverse)

seq1  GCAG-CAGTTATTTAAATGGAATTAGTTAG-AAATATGA-TTCGGGCTTA  47
      |||| ||||||||  ||||    ||||||| |||||||| ||||||| ||
seq2  GCAGCCAGTTATT--AATG---ATAGTTAGAAAATATGATTTCGGGCCTA  45

seq1  GAAGGCATTCCAAAATTAAGAAGACATT--CTCTCTCTC-TCTCTAGATT  94
      ||| |||||||||| |||||||||||||  |||||| || ||| ||||||
seq2  GAA-GCATTCCAAATTTAAGAAGACATTTCCTCTCTTTCTTCTTTAGATT  94

seq1  GGACAGAGAATTCTGTGAAAAGAAAACCGCTGCCTAGATTTGGGCTGAAT  144
      | |||||||||||| ||||||||||||||||| ||| |||||||||| ||
seq2  GAACAGAGAATTCTTTGAAAAGAAAACCGCTG-CTAAATTTGGGCTG-AT  142

seq1  AATTCAGAAAACAAACCTGACCAACAGGCTACTTTTAGTAGCAGTTAGAA  194
      ||||||||||||||| |||||| ||| ||||| |||||||||||||||||
seq2  AATTCAGAAAACAAA-CTGACC-ACA-GCTAC-TTTAGTAGCAGTTAGAA  188

seq1  AATGGGGGATTTTTGTTCCATGTAAGACAG-AAAGAGCCCAGTTACCCAA  243
      ||| ||||||||||||||||||| |||||| |||||||||||||||||||
seq2  AAT-GGGGATTTTTGTTCCATGT-AGACAGAAAAGAGCCCAGTTACCCAA  236

seq1  CTTTTCCTCCAGCCTTTGCATATCATATGCTAAGACAATGAAGCCAGATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTCCAGCCTTTGCATATCATATGCTAAGACAATGAAGCCAGATT  286

seq1  AAAACAGCCACTGCCACCAAGTGACAAACGTAGGAAACAAGCAGAAGTGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCCACTGCCACCAAGTGACAAACGTAGGAAACAAGCAGAAGTGC  336

seq1  CCACAATGAGAGGCACTTCTAATACCATTAAAAGTCCCAAATATTCTGCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGAGAGGCACTTCTAATACCATTAAAAGTCCCAAATATTCTGCT  386

seq1  GAGGTTGAAGATTGCTAAAGCTAAAACGTATAAACACATAAAGATTCATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGAAGATTGCTAAAGCTAAAACGTATAAACACATAAAGATTCATG  436

seq1  TTCATCTTTAAGGGAATACCTTCAAGTGCTACATGATCCTTTCTTTGTTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTTAAGGGAATACCTTCAAGTGCTACATGATCCTTTCTTTGTTA  486

seq1  ACTTAGCACTGTATCATGGGGTTGACATTAAATACAACATATGTCTAAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCACTGTATCATGGGGTTGACATTAAATACAACATATGTCTAAAT  536

seq1  CTTAAAAACTAAAGTAAGTCCCAATAAATTCAGTACTTGGAATCTCTCAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAACTAAAGTAAGTCCCAATAAATTCAGTACTTGGAATCTCTCAC  586

seq1  ACAGTAGGCTTTATGAACACAGTTTCCATTTGGACCAATTCAATAACTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGCTTTATGAACACAGTTTCCATTTGGACCAATTCAATAACTAA  636

seq1  TATTGGGCACTTATCACCTTCAAGACACTGTGGGTAATATCAATGCAGGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGCACTTATCACCTTCAAGACACTGTGGGTAATATCAATGCAGGC  686

seq1  CAAGGACTACCTACCCTGATACCTCAATCTTTCAAAAAAAAAAAAAAAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACTACCTACCCTGATACCTCAATCTTTCAAAAAAAAAAAAAAAGT  736

seq1  GAGTCTCAGTTTATATATCTGGGTCTGAACAATAGCTAGGTGCCAACTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCAGTTTATATATCTGGGTCTGAACAATAGCTAGGTGCCAACTGT  786

seq1  AATATTCAGAGGCTACTGAGTGGAGGCCAGAACAGAAAACGAATCCCATG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCAGAGGCTACTGAGTGGAGGCCAGAACAGAAAACGAATCCCATG  836

seq1  CAGAGGAATCAAAAGGACACAGCAGTTTCCAAAGGGAGAAACTGCGATCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAATCAAAAGGACACAGCAGTTTCCAAAGGGAGAAACTGCGATCA  886

seq1  ACACAAGCTTTTTGAAAAGAAGAAAAAGACAATTAGACACTTCAGTGCAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCTTTTTGAAAAGAAGAAAAAGACAATTAGACACTTCAGTGCAT  936

seq1  AGAGAACCATTTAAGACAAACATAAATTCTATCATGCTTACATTAAATGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCATTTAAGACAAACATAAATTCTATCATGCTTACATTAAATGG  986

seq1  CATAATTGAGAAAAGCTCTAGAGAAAGAATGATTATCATGACACTTGAGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTGAGAAAAGCTCTAGAGAAAGAATGATTATCATGACACTTGAGG  1036

seq1  TCTTTATGTGTACCCCAAGTTAAAAAGAAAAACATACATGCTCATGACTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTGTACCCCAAGTTAAAAAGAAAAACATACATGCTCATGACTA  1086

seq1  AGTGATGCCCATGTGTGTACCCTCAGTTTCCAGTCTATTAGGGCTGAATT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGCCCATGTGTGTACCCTCAGTTTCCAGTCTATTAGGGCTGAATT  1136

seq1  C  1144
      |
seq2  C  1137

seq1: chr14_123191304_123192438
seq2: B6Ng01-095O11.g_69_1168

seq1  GAATTCTTTGTTTAGCTCTGTATCCCATTTTTAAATAGGGTTATTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTATCCCATTTTTAAATAGGGTTATTTGTTT  50

seq1  CTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCA  100

seq1  CTATCAGATTTAGGATTTTTAAAGATCTTTGACTTTCTCTAGCACATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGATTTAGGATTTTTAAAGATCTTTGACTTTCTCTAGCACATGCC  150

seq1  CCAGGAAGTTAGTATTGTAATTTGAGAAGCTCATCCCCCAACCCCAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGTTAGTATTGTAATTTGAGAAGCTCATCCCCCAACCCCAATGG  200

seq1  CTTCCTATTAGCAGTTACCTTGAACACAAGAGTTGATAGCATGTTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATTAGCAGTTACCTTGAACACAAGAGTTGATAGCATGTTCTTTG  250

seq1  TAATCCGTGACCTCTATTTAAAGTAGAAACCCATGGAGCTAAGCCTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCGTGACCTCTATTTAAAGTAGAAACCCATGGAGCTAAGCCTCCAT  300

seq1  GGGCACTTCATACTGAGGTCAGAGGCTCCTGGAAAACCAAACACTAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTTCATACTGAGGTCAGAGGCTCCTGGAAAACCAAACACTAAACA  350

seq1  AAACCACAGGAAAATGTGGCTCTTACATATGAATAGGAATTTTCAATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAGGAAAATGTGGCTCTTACATATGAATAGGAATTTTCAATCTC  400

seq1  TCATAGCATCAAATGCTGGTTTTTAAACTCAATTTTATGTAGAAAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCATCAAATGCTGGTTTTTAAACTCAATTTTATGTAGAAAACCAA  450

seq1  AGAATCACATCTGTTTTATGTTTCATCTATACCTGTCTCTATTAAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACATCTGTTTTATGTTTCATCTATACCTGTCTCTATTAAGAGAC  500

seq1  TGTGAGTCAGAGGACTCAGACTCTGAAATAGATATCTGAGGACTGATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCAGAGGACTCAGACTCTGAAATAGATATCTGAGGACTGATTAG  550

seq1  TCTCTAAGATTGTTGTGTTATCTCTGTAGGTCTAAGAGGGCTTTAACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGATTGTTGTGTTATCTCTGTAGGTCTAAGAGGGCTTTAACTCT  600

seq1  TAGTACTCAACCTGATATTTTGGCTTCTCTATGCATACTAATTTTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTCAACCTGATATTTTGGCTTCTCTATGCATACTAATTTTCTTCT  650

seq1  ATACCCTAACTCTTTGCTTCATTTTTTCTACCTTATAAATAAGTTATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTAACTCTTTGCTTCATTTTTTCTACCTTATAAATAAGTTATGAG  700

seq1  ATGAAAGTATTTGAGACCATTGAACGATATATCGCTACATGC-TTTCACA  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGAAAGTATTTGAGACCATTGAACGATATATCGCTACATGCTTTTCACA  750

seq1  CTACTTAAATCCATTTGATGGGCTCAGAGATGTGGTTTAGTGGCAGAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAAATCCATTTGATGGGCTCAGAGATGTGGTTTAGTGGCAGAATG  800

seq1  CTTGTCTAGCATGGCCAACAAACACCCTGAATTTGATTCTTAGCATTGCC  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTGTCTAGCATGGCCAACAAACACCCTGAATTTGATTC-TAGCATTGCC  849

seq1  TAAAACCAAGTGTGATGGTGCATTTGTATAATCCTGGCACTCGGGAATCG  899
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  T-AAACCAAGTGTGATGGTGCATTTGTATAATCCTGGCACTC-GGAATCG  897

seq1  GAAGAGAGAAGATGAGGAGCTCAAGGGCCTCCTTAGCTGAGGAGAGTTGG  949
      |||||||| |||||| |||||| ||||||||  ||||||| ||||||| |
seq2  GAAGAGAG-AGATGA-GAGCTC-AGGGCCTC--TAGCTGA-GAGAGTT-G  940

seq1  AGACCAGCCTGGGATGCATGTGTCCCTGTCTACACAAGCAAGCACACAGC  999
      ||| ||| ||||||||||||||| |||||||  || ||| ||||||||| 
seq2  AGA-CAG-CTGGGATGCATGTGT-CCTGTCT--ACCAGC-AGCACACAG-  983

seq1  CACAAACAAACAAATACTGAAGAAGTGAATAGAATAATAAATCTTGTGCT  1049
      ||||||||| |  |||||| || |||||||||| |||| |||| ||||||
seq2  CACAAACAACC--ATACTGGAG-AGTGAATAGATTAAT-AATC-TGTGCT  1028

seq1  ATTACATCTTAACAACAGTGGTCAATACCATATTTTTTGTTGGACCATGT  1099
      ||   |||||||| |||||||||| |||   |||||||||||   |||| 
seq2  AT--AATCTTAAC-ACAGTGGTCATTAC--AATTTTTTGTTG--ACATG-  1070

seq1  GGTTTGGGGCATCAGGTAGTTTGACTGTTGTGTATT  1135
          || ||||| | |||  | ||||||||||||||
seq2  ----TGTGGCATTA-GTA-CTGGACTGTTGTGTATT  1100