BAC Information

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BAC

Clone NameB6Ng01-096K17
ChromosomeY (Build37)14 (Build37)
Map Location 1,120,589 - 1,121,07742,867,535 - 42,868,688
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096K17.bB6Ng01-096K17.g
ACCDH907253DH907254
length9201,162
definitionDH907253|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K17, 5' end.DH907254|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,589 - 1,121,077)(42,867,535 - 42,868,688)
sequence
gaattctttattttttcccatttttattaggtatttagctcatttacatt
tccaatgctataccaaaagtcccccatagccacccacccccactccccta
cacacccactccccctttttggccttggccttcccctgtactggggcata
taaagtttacgtgtccaaatggcctctctttccagtgatggccgattagg
ccatcttttgatacatatgcagctagagtcaagagctccggggtactggt
tagttcataatgttgttccacctatagggttgcagatccctttagctcct
tgggtgctttctctagttcctccattgggagccctgtgatccatccatta
gctgactgtgagcatccacttctgtgtttgctaggcccccggcatagtct
cagaagagatagctacatctgggtcctttcaataaaatcttgctagggta
tgcaatggtgtcagcgtttggatgctgattatggggtggatccctggata
tggcagtctctacatggtccatcctttcatctcagctccaaaccttgtct
ctgtaactccttccattggtgttttgttcccaattctaaggaggggcata
gtgtccacacttcagtcttcattcttcttgagtttcatgtgtttagcaaa
ttgtaccttatatcttgggaatcctaggtttggggctaatatccacttat
cagtgagtacatattgtgtgagtttctttgtgaatgtgttacctcactca
ggatgatgccctccaggtccatccatttggctaggaatttcataaattca
ttctttttaatagctgagtagtactccattgtgtagatgtaccacatttt
ctgtatccattcctctgttgaggggcatctgggttctttccagcttctgg
ctattataaataaggctgct
gaattccatgggcctatgtttaggagtctggggacagggaccaacaaaat
cctggacagtgctggggtgcagagagttcacagcaggtttgaccctgcta
gcctgcaaggataacagggcaaggggttctcagaatcttagacatgcagg
cactgctagaagtctcagaggagctgagcatggaggaggccaacaggctg
agaactagcccggaaatcagggaatggggaattctggattagctcagagg
tgactagcccaggagtattgaggggccttcttttggagacttagatggca
aggctctgtaggcaaaggctttttctccatgtaaccacagttggtttgat
gagagagacagtctttggttgtaaactgtttatcgcttttcatggaaatg
aaagcataacatgtcttgaggttagactagaagttaagtaccttgtgagg
aaggaatgtccaggaatggaagcttattgactgaaccctaccatcttcta
ggtacctcattagcagggaaaaccttattctgttctaaatgaccacaggt
catgttcctatgtagagattttggtcccatgaaagaggcctgctaggaag
caggtgacacttttgccatatactgtgggtctgggacttccaacccactc
aaatttaccaaattctggacatggtagtctactgtcccaggtcttactta
gtctgagatttattgatatgaagaaacaccaggacatatgtttagtatgc
ggggtctcagtgtctaccctccacactgacacactgtttctaacaaggcc
acaactcctaacagtaccacccccatattccaagccaccacactcctctg
caatctcccaagacatttacctcactctgtcctactgttttcctttttct
ccttcacaaatatgtgttctattattttcttgaaatatcctcttataacc
caacatagtgcattaccttctatcaatactgcagtttaaaatacaccatc
tctagacattcaatgtaccatcctcataagaacacatcatggtggtactt
gtctttttggtgtgggttaatatcacctccagaaaagaattattcatggt
gtccatccatttaacctgtgtaatttcatttataatggtcagttcatgca
ttgatatatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120589_1121077
seq2: B6Ng01-096K17.b_56_545

seq1  TTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTA  50
      ||||||||  ||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTTTCCCATTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTA  50

seq1  TACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACT  100
      |||||||||||||||||| |||||||||||||||||||| | ||||||||
seq2  TACCAAAAGTCCCCCATAGCCACCCACCCCCACTCCCCTACACACCCACT  100

seq1  CCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGC  150
      |||||||||||||| |||  |||||||||||||||||||||||||||| |
seq2  CCCCCTTTTTGGCCTTGGCCTTCCCCTGTACTGGGGCATATAAAGTTTAC  150

seq1  AAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTG  200
        ||||||  ||||||||||||||||||||||||| ||||||||||||||
seq2  GTGTCCAAATGGCCTCTCTTTCCAGTGATGGCCGATTAGGCCATCTTTTG  200

seq1  ATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAA  250
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAA  250

seq1  CGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACTTT  300
       ||||||||||||||||||||| |||||||||||||||||||| | ||||
seq2  TGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTGCTTT  300

seq1  CTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTG  350
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCTAGTTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTG  350

seq1  AGCATCCACTTCTGTGTTTGCT-GGGCCCCGGCATAGTCTCACAAGAGAC  399
      |||||||||||||||||||||| || |||||||||||||||| |||||| 
seq2  AGCATCCACTTCTGTGTTTGCTAGGCCCCCGGCATAGTCTCAGAAGAGAT  400

seq1  AGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTG  449
      |||||||||||  ||||||||||||||||||||||| |||||||||||||
seq2  AGCTACATCTGGGTCCTTTCAATAAAATCTTGCTAGGGTATGCAATGGTG  450

seq1  TCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGCTA  489
      ||||||||||||||||||||||||||||||||||||| ||
seq2  TCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGATA  490

seq1: chr14_42867535_42868688
seq2: B6Ng01-096K17.g_67_1228

seq1  GAATTCCATGGGCCTATGTTTAGGAGTCTGGGGACAGGGACCAACAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGGCCTATGTTTAGGAGTCTGGGGACAGGGACCAACAAAAT  50

seq1  CCTGGACAGTGCTGGGGTGCAGAGAGTTCACAGCAGGTTTGACCCTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACAGTGCTGGGGTGCAGAGAGTTCACAGCAGGTTTGACCCTGCTA  100

seq1  GCCTGCAAGGATAACAGGGCAAGGGGTTCTCAGAATCTTAGACATGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAAGGATAACAGGGCAAGGGGTTCTCAGAATCTTAGACATGCAGG  150

seq1  CACTGCTAGAAGTCTCAGAGGAGCTGAGCATGGAGGAGGCCAACAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTAGAAGTCTCAGAGGAGCTGAGCATGGAGGAGGCCAACAGGCTG  200

seq1  AGAACTAGCCCGGAAATCAGGGAATGGGGAATTCTGGATTAGCTCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAGCCCGGAAATCAGGGAATGGGGAATTCTGGATTAGCTCAGAGG  250

seq1  TGACTAGCCCAGGAGTATTGAGGGGCCTTCTTTTGGAGACTTAGATGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGCCCAGGAGTATTGAGGGGCCTTCTTTTGGAGACTTAGATGGCA  300

seq1  AGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCACAGTTGGTTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCACAGTTGGTTTGAT  350

seq1  GAGAGAGACAGTCTTTGGTTGTAAACTGTTTATCGCTTTTCATGGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACAGTCTTTGGTTGTAAACTGTTTATCGCTTTTCATGGAAATG  400

seq1  AAAGCATAACATGTCTTGAGGTTAGACTAGAAGTTAAGTACCTTGTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAACATGTCTTGAGGTTAGACTAGAAGTTAAGTACCTTGTGAGG  450

seq1  AAGGAATGTCCAGGAATGGAAGCTTATTGACTGAACCCTACCATCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGTCCAGGAATGGAAGCTTATTGACTGAACCCTACCATCTTCTA  500

seq1  GGTACCTCATTAGCAGGGAAAACCTTATTCTGTTCTAAATGACCACAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTCATTAGCAGGGAAAACCTTATTCTGTTCTAAATGACCACAGGT  550

seq1  CATGTTCCTATGTAGAGATTTTGGTCCCATGAAAGAGGCCTGCTAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCTATGTAGAGATTTTGGTCCCATGAAAGAGGCCTGCTAGGAAG  600

seq1  CAGGTGACACTTTTGCCATATACTGTGGGTCTGGGACTTCCAACCCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACACTTTTGCCATATACTGTGGGTCTGGGACTTCCAACCCACTC  650

seq1  AAATTTACCAAATTCTGGACATGGTAGTCTACTGTCCCAGGTCTTACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACCAAATTCTGGACATGGTAGTCTACTGTCCCAGGTCTTACTTA  700

seq1  GTCTGAGATTTATTGATATGAAGAAACACCAGGACATATGTTTAGTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGATTTATTGATATGAAGAAACACCAGGACATATGTTTAGTATGC  750

seq1  -GGGTCTCAGTGTCTACCCTCCACACTGACACACTGTTTCTAACAAGGCC  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTCAGTGTCTACCCTCCACACTGACACACTGTTTCTAACAAGGCC  800

seq1  ACAACTCCTAACAGTACCACCCCCATATT-CAAGCCACCACACTCCTCTG  848
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAACTCCTAACAGTACCACCCCCATATTCCAAGCCACCACACTCCTCTG  850

seq1  CAATCTCCCAAGACATTTACCTCACTCTGTCCTACTGTTTTCCTTTTTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCCAAGACATTTACCTCACTCTGTCCTACTGTTTTCCTTTTTCT  900

seq1  CCTTCACAAATTATGTGTTCTATTATTTTCTTGAAATATCCTCTTATAAC  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAAA-TATGTGTTCTATTATTTTCTTGAAATATCCTCTTATAAC  949

seq1  CCAACAATAGTGCATTACCTTCTATCAATACTGCAGTTT-AAATACA-CA  996
      ||||| ||||||||||||||||||||||||||||||||| ||||||| ||
seq2  CCAAC-ATAGTGCATTACCTTCTATCAATACTGCAGTTTAAAATACACCA  998

seq1  TCTCTAGACATTCAATGTTACCATCCTCATAAG-ACACATCAT-GTGGTA  1044
      ||||||||||||||||| ||||||||||||||| ||||||||| ||||||
seq2  TCTCTAGACATTCAATG-TACCATCCTCATAAGAACACATCATGGTGGTA  1047

seq1  CTTGTCTTTTTGGGTGTGGGTT-ATATCAC--TCAGAAA--GATTATTCA  1089
      ||||||||||| |||||||||| |||||||   ||||||   ||||||||
seq2  CTTGTCTTTTT-GGTGTGGGTTAATATCACCTCCAGAAAAGAATTATTCA  1096

seq1  T-GTGTCCATCCA-TTAACCTGT-AAATTTCATTTATATTGTCACAGTTC  1136
      | ||||||||||| |||||||||  ||||||||||||| ||   ||||||
seq2  TGGTGTCCATCCATTTAACCTGTGTAATTTCATTTATAATG-GTCAGTTC  1145

seq1  ATTACCATTG-TATATGTG  1154
      ||   ||||| ||||||||
seq2  AT--GCATTGATATATGTG  1162