BAC Information

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BAC

Clone NameB6Ng01-096L05
Chromosome3 (Build37)14 (Build37)
Map Location 47,228,529 - 47,229,716102,386,326 - 102,386,509
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG241989, LOC545517, LOC383849, LOC383850
Downstream geneLOC100039426, LOC666202, LOC666208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096L05.bB6Ng01-096L05.g
ACCDH907277DH907278
length1,184353
definitionDH907277|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L05, 5' end.DH907278|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,228,529 - 47,229,716)(102,386,326 - 102,386,509)
sequence
gaattcatatatatcatatgtgtgcctgcaaactgcagaggtgatagata
atagggcatccagttccttggaactagagtggcaaggtttgtgagctgtc
tgttatgagtgttggaactgagcccagttcctctgcaatatagtatgtcc
tcttaatcacccagccatttctccaggctctccattaaagtaagtttaaa
ttgcaattatacagttaacatgtgattttacagagctgtcgatcaaagaa
tcttaagtctattgaaacattgctgaattaaggtagatttgctattcaag
ggctcatagagactagttaattcactcagtcttagctcaaattcaaacat
ttaagaacactggagctacaagcagaaggagggaaatgacatgattatat
tttaattaaaaaattaaagaaaagattaactcgtaaacacatacaagcct
gagtaagacaaagaaaacaaaactaatcagaggaaaaggtaacagcagat
gcgagtcccaaagtaaattctgaaacaacaacaggaaatttaaattggac
cttaagccaactgcacataaaaattctcgatttttctttttataaatttt
aaagtatttacttttctttttgttcacatgtttaaattctatacatactt
atgtcaaataaaattgcaattattaataaaatatctggaatgtcttctaa
cactcaaaaacatgatttcactacacccaaaacagtgtatattttcttta
gagttaatttttttctcttattacatttttaaaataatgccactaaacta
ttactgttagggtcatgcagaatcttatttacccttatttatttatttgt
ttatttatttaaatgtcatggaactattatattccttatgctgcattcta
taagtgtatatgtacatataagtatatattgtatgcatgatgcatctgtg
tataacatatacacagtatgtgtattacagtcaaaatgtagtcataatat
atctctaataatagcatctacacaccttatacaccacccagtactacatt
tttggtactgagcaatatgacatagctgatctaagcatttctggtttgac
agcagtacctagaaatctttgtgttatacagaggatgtaccgtgggttct
tgagaaaattctagagttctacaatgacaacaat
gaattccacataaaaccagagagagtgaaactgatagaggaggaagtggg
taaaagcctcgaagttatgggcacaggggaaaaattcctgaataaaacag
aaatggtttgtgctgtaagatcgagaatcaacaaatgggacctcataaaa
ttgcaacgcttctgtaaggcaaaagacaccatcaataagacaaaaaggcc
accaaccaattgggaaaggatctttacctatcctaaatcagatagtggac
taatatccaatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47228529_47229716
seq2: B6Ng01-096L05.b_47_1230

seq1  GAATTCATATATATCATATGTGTGCCTGCAAACTGCAGAGGTGATAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATATCATATGTGTGCCTGCAAACTGCAGAGGTGATAGATA  50

seq1  ATAGGGCATCCAGTTCCTTGGAACTAGAGTGGCAAGGTTTGTGAGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCATCCAGTTCCTTGGAACTAGAGTGGCAAGGTTTGTGAGCTGTC  100

seq1  TGTTATGAGTGTTGGAACTGAGCCCAGTTCCTCTGCAATATAGTATGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGAGTGTTGGAACTGAGCCCAGTTCCTCTGCAATATAGTATGTCC  150

seq1  TCTTAATCACCCAGCCATTTCTCCAGGCTCTCCATTAAAGTAAGTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCACCCAGCCATTTCTCCAGGCTCTCCATTAAAGTAAGTTTAAA  200

seq1  TTGCAATTATACAGTTAACATGTGATTTTACAGAGCTGTCGATCAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTATACAGTTAACATGTGATTTTACAGAGCTGTCGATCAAAGAA  250

seq1  TCTTAAGTCTATTGAAACATTGCTGAATTAAGGTAGATTTGCTATTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTCTATTGAAACATTGCTGAATTAAGGTAGATTTGCTATTCAAG  300

seq1  GGCTCATAGAGACTAGTTAATTCACTCAGTCTTAGCTCAAATTCAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATAGAGACTAGTTAATTCACTCAGTCTTAGCTCAAATTCAAACAT  350

seq1  TTAAGAACACTGGAGCTACAAGCAGAAGGAGGGAAATGACATGATTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACACTGGAGCTACAAGCAGAAGGAGGGAAATGACATGATTATAT  400

seq1  TTTAATTAAAAAATTAAAGAAAAGATTAACTCGTAAACACATACAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAAAAAATTAAAGAAAAGATTAACTCGTAAACACATACAAGCCT  450

seq1  GAGTAAGACAAAGAAAACAAAACTAATCAGAGGAAAAGGTAACAGCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGACAAAGAAAACAAAACTAATCAGAGGAAAAGGTAACAGCAGAT  500

seq1  GCGAGTCCCAAAGTAAATTCTGAAACAACAACAGGAAATTTAAATTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTCCCAAAGTAAATTCTGAAACAACAACAGGAAATTTAAATTGGAC  550

seq1  CTTAAGCCAACTGCACATAAAAATTCTCGATTTTTCTTTTTATAAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCCAACTGCACATAAAAATTCTCGATTTTTCTTTTTATAAATTTT  600

seq1  AAAGTATTTACTTTTCTTTTTGTTCACATGTTTAAATTCTATACATACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTACTTTTCTTTTTGTTCACATGTTTAAATTCTATACATACTT  650

seq1  ATGTCAAATAAAATTGCAATTATTAATAAAATATCTGGAATGTCTTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAATAAAATTGCAATTATTAATAAAATATCTGGAATGTCTTCTAA  700

seq1  CACTCAAAAACATGATTTCACTACACCCAAAACAGTGTATATTTTCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAAAACATGATTTCACTACACCCAAAACAGTGTATATTTTCTTTA  750

seq1  GAGTTAATTTTTTTCTCTTATTACATTTTTAAAATAATGCCACTAAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATTTTTTTCTCTTATTACATTTTTAAAATAATGCCACTAAACTA  800

seq1  TTACTGTTAGGGTCATGCAGAATCTTATTTACCCTTATTTATTTATTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTAGGGTCATGCAGAATCTTATTTACCCTTATTTATTTATTTGT  850

seq1  TTATTTATTTAAATGTCATGGAACTATTATATTCCTTATGCTGCATTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTAAATGTCATGGAACTATTATATTCCTTATGCTGCATTCTA  900

seq1  TAAGTGTATATGTACATATAAGTATATATTGTATGCATGATGCATCTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTATATGTACATATAAGTATATATTGTATGCATGATGCATCTGTG  950

seq1  TATAACATATACACAGTATGTGTATTACAGTCAAAATGTAGTCATAATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATATACACAGTATGTGTATTACAGTCAAAATGTAGTCATAATAT  1000

seq1  ATCTCTAATAATTAGCATCTACACACCTTATACACCACCCAGTACTACAT  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAATAA-TAGCATCTACACACCTTATACACCACCCAGTACTACAT  1049

seq1  ATTTGGTACTGAGCAATATGACATAAGCTGATCTAAGCATTTCTGAGTTT  1100
       ||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  TTTTGGTACTGAGCAATATGACAT-AGCTGATCTAAGCATTTCTG-GTTT  1097

seq1  GACAGCAGTACCTAGAAATCTTTGTGTTATACAGGAAAGATG-ACCGT-G  1148
      ||||||||||||||||||||||||||||||||||  | |||| ||||| |
seq2  GACAGCAGTACCTAGAAATCTTTGTGTTATACAG--AGGATGTACCGTGG  1145

seq1  GTTC-TGAGAATATTTCCATAGA-TTCTACAATACAAACAAT  1188
      |||| |||||| |||    |||| |||||||||   ||||||
seq2  GTTCTTGAGAAAATT---CTAGAGTTCTACAATGACAACAAT  1184

seq1: chr14_102386326_102386509
seq2: B6Ng01-096L05.g_150_333

seq1  AATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGAT  50
      |||||||||||| ||||| ||||| |||||||||||||||||||||| | 
seq2  AATTCCTGAATAAAACAGAAATGGTTTGTGCTGTAAGATCGAGAATCAAC  50

seq1  AAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGT  100
      |||||||||||||||||||||||| ||||||| || |||||||||||| |
seq2  AAATGGGACCTCATAAAATTGCAACGCTTCTGTAAGGCAAAAGACACCAT  100

seq1  CAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATC  150
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  CAATAAGACAAAAAGGCCACCAACCAATTGGGAAAGGATCTTTACCTATC  150

seq1  CCAAATCGGATAGGGGACTAATATCCAATATATA  184
      | ||||| ||||| ||||||||||||||||||||
seq2  CTAAATCAGATAGTGGACTAATATCCAATATATA  184