BAC Information

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BAC

Clone NameB6Ng01-096P23
Chromosome14 (Build37)17 (Build37)
Map Location 85,296,884 - 85,297,94851,977,391 - 51,977,865
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P23.bB6Ng01-096P23.g
ACCDH907488DH907489
length1,057642
definitionDH907488|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P23, 5' end.DH907489|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,296,884 - 85,297,948)(51,977,391 - 51,977,865)
sequence
gaattcttccaacaatcgaacaaataaaatacaagcaaattgtcttcctc
tgcagtgaaaatttaaattctttcctgtgttctgcacattcagtaatgtg
acctatacagttataagaacaatgttcaacaaaattactttatcaagtat
gaaattgactgaacctattcagacattgccaaagcatataagaaagataa
acaaaatcacaacaaaaagaaattaaaatatttagaatagaaataaagtg
cagaatcttgaactatttgaaaatgaaccactaaaatgagagtaaggtcc
agagacaagctaatcagaaagtgggatatttaacaacactgtgtattgat
ctctgagtgctattaatatgaatgaatttgaattatatatcgggccttga
aacaagcaaagcctgcatagaaatggtgggtgcaatgttaccagttttgg
ataatggaaatgggaggaacccaagggttcatggtccagcagtctagctt
aaattttaagatctagaaaaatgacagattccgaatcaaagcgatgaatg
atgctttaagaaagacactcagttctattccgttgatctacctgtctgtc
gctgtaccagtaccattcagtttttatcacaattgctctgtagcacagct
taaggtcaggcatggtgattccaccagaggttcttttattgttgagaata
gttttcgctatcctaggatttttgttattccagatgaatttgcaaattgc
tctttctaactcagtgaagaattgagttggacttttgattgggatttcat
tgaatctgtagattgcattccgcaggatagtcattttgactatgttaaac
cttgcccaatctatgagctagggagatctttccatcttctgagatcttct
tcaatttctttcttcagagacttgaaattcttgtatacagatctttcact
tccttagttaagtcacacaaggaattttatattattgtgcctattgtgag
gtgtgtctccctaatttcttctcagcccatttatcctttgtgtagagaag
gccattg
gaattcagatgggagaaactaggtggtgagacacttggagtatttaggag
gagaaaatgaaatcagaaatctcatatatcaactattttctttttaattt
tattttcaaaatattatctttatagtcactttcagagaaagaaaatctta
gaatatttttacagtaaagttaacattgatattttacccctgaattctag
tgttatttttctctttaaaaatttcagtggttctttgtgaattgcacatc
atgcacctcccatgttgcactctttctacctcctccccaaaagagaaaaa
agaaataaaacaaacaaacaaacaaacaaacaaacaaaaaacctttatca
tggaatcttcagtgtgtcacactgtgtcccacacttttccttttgttccc
actctgttttccttgcaaatgttcattgcaaacagtgtttggtctgattc
aaagtctccggcttctgctacagtatcatttgtgaaacttcactgaaatg
cctctcaaatatcttgttgttgcccttttttcacagagattctgtagttt
tggaccagtaggcagggcccctttacacgctccagcaattcaccaatggg
gtaggtgttggagtggacctgagcctgagctgtatctgagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85296884_85297948
seq2: B6Ng01-096P23.b_48_1104

seq1  GAATTCTTCCAACAATCGAACAAATAAAATACAAGCAAATTGTCTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAACAATCGAACAAATAAAATACAAGCAAATTGTCTTCCTC  50

seq1  TGCAGTGAAAATTTAAATTCTTTCCTGTGTTCTGCACATTCAGTAATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAAAATTTAAATTCTTTCCTGTGTTCTGCACATTCAGTAATGTG  100

seq1  ACCTATACAGTTATAAGAACAATGTTCAACAAAATTACTTTATCAAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATACAGTTATAAGAACAATGTTCAACAAAATTACTTTATCAAGTAT  150

seq1  GAAATTGACTGAACCTATTCAGACATTGCCAAAGCATATAAGAAAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGACTGAACCTATTCAGACATTGCCAAAGCATATAAGAAAGATAA  200

seq1  ACAAAATCACAACAAAAAGAAATTAAAATATTTAGAATAGAAATAAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCACAACAAAAAGAAATTAAAATATTTAGAATAGAAATAAAGTG  250

seq1  CAGAATCTTGAACTATTTGAAAATGAACCACTAAAATGAGAGTAAGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTTGAACTATTTGAAAATGAACCACTAAAATGAGAGTAAGGTCC  300

seq1  AGAGACAAGCTAATCAGAAAGTGGGATATTTAACAACACTGTGTATTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAGCTAATCAGAAAGTGGGATATTTAACAACACTGTGTATTGAT  350

seq1  CTCTGAGTGCTATTAATATGAATGAATTTGAATTATATATCGGGCCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTGCTATTAATATGAATGAATTTGAATTATATATCGGGCCTTGA  400

seq1  AACAAGCAAAGCCTGCATAGAAATGGTGGGTGCAATGTTACCAGTTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCAAAGCCTGCATAGAAATGGTGGGTGCAATGTTACCAGTTTTGG  450

seq1  ATAATGGAAATGGGAGGAACCCAAGGGTTCATGGTCCAGCAGTCTAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAAATGGGAGGAACCCAAGGGTTCATGGTCCAGCAGTCTAGCTT  500

seq1  AAATTTTAAGATCTAGAAAAATGACAGATTCCGAATCAAAGCGATGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAGATCTAGAAAAATGACAGATTCCGAATCAAAGCGATGAATG  550

seq1  ATGCTTTAAGAAAGACACTCAGTTCTATTCCGTTGATCTACCTGTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAAGAAAGACACTCAGTTCTATTCCGTTGATCTACCTGTCTGTC  600

seq1  GCTGTACCAGTACCATTCAGTTTTTATCACAATTGCTCTGTAGCACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACCAGTACCATTCAGTTTTTATCACAATTGCTCTGTAGCACAGCT  650

seq1  TAAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATTGTTGAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATTGTTGAGAATA  700

seq1  GTTTTCGCTATCCTAGGATTTTTGTTATTCCAGATGAATTTGCAAATTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCGCTATCCTAGGATTTTTGTTATTCCAGATGAATTTGCAAATTGC  750

seq1  TCTTTCTAACTCAGTGAAGAATTGAGTTGGACTTTTGATTGGGATTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAACTCAGTGAAGAATTGAGTTGGACTTTTGATTGGGATTTCAT  800

seq1  TGAATCTGTAGATTGCATTCCGCAGGATAGTCATTTTGACTATGTTAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGTAGATTGCATTCCGCAGGATAGTCATTTTGACTATGTTAAAC  850

seq1  CTTG-CCAATCTATGAGCTAGGGAGATCTTTCCATCTTCTGAGATCTTCT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCAATCTATGAGCTAGGGAGATCTTTCCATCTTCTGAGATCTTCT  900

seq1  TCAATTTCTTTCTTCAGAGACTTGAAATTCTTGTTATACAGATCTTTCAC  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCAATTTCTTTCTTCAGAGACTTGAAATTCTTG-TATACAGATCTTTCAC  949

seq1  TTCCTTAGTTAAAGTCACACCAAGGAATTTTATATTATTTGTGCCTATTG  999
      |||||||||| |||||||| ||||||||||||||||| ||||||||||||
seq2  TTCCTTAGTT-AAGTCACA-CAAGGAATTTTATATTA-TTGTGCCTATTG  996

seq1  TGAAGGGTGTTGTCTCCCTAATTTCTTTCTCAGCCCATTTATCCTTTGTG  1049
      |||  |||| ||||||||||||||| ||||||||||||||||||||||||
seq2  TGA--GGTG-TGTCTCCCTAATTTC-TTCTCAGCCCATTTATCCTTTGTG  1042

seq1  TAGAGAAAGGCCATTG  1065
      ||||| ||||||||||
seq2  TAGAG-AAGGCCATTG  1057

seq1: chr17_51977391_51977865
seq2: B6Ng01-096P23.g_153_398

seq1  ATTTTCTTTTTAATTTTAAAAATTGATTCAGGAACTGGCATGATGGCTTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGATAAAAGGGGCTTTCCCTCAAGCCTGTTACCACCTGTTGGATGCCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTGACCTCTACATTAGAAGGAGACCTCCACACATGTGCCATGACTCCAAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTACATTCATTCACACATAATTAATGCATAAATAAGTGTAGTAAAATTGT  200
        |  ||| ||   |  | |||  | || |||||    ||     || ||
seq2  --ATTTTCTTTTTAATTTTATT--TTCA-AAATA---TTATCTTTATAGT  42

seq1  TATTGTAAGAAGTAAATGAATAAATAAAAATTGATTGCTCGACAGTCAGG  250
       | | | |||    || ||| |  | | |||  |||  |  ||||| |  
seq2  CACTTTCAGA---GAAAGAAAATCTTAGAAT--ATT--TTTACAGTAA--  83

seq1  CACGAGGGAAGGAACTCAGGGATCTCTTCCCTCATGGCTGGCCTGTTTTC  300
          ||  ||      ||  ||| | || ||          ||||  |||
seq2  ----AGTTAA------CATTGATATTTTACC----------CCTGAATTC  113

seq1  TACTGATAGAT---TCAGAGAAAGGGCAACCATTCCTCTCAGTTCTGTAC  347
      || || ||  |   ||    |||        |||    |||||   || |
seq2  TAGTGTTATTTTTCTCTTTAAAA--------ATT----TCAGT--GGTTC  149

seq1  CCAGTGATGGCCCCAGCAGACTCGGTGCATAGATCCCAGCTAATGCTCAC  397
         ||||    | || ||       |||  |  |||||  |  ||| | |
seq2  TTTGTGAATTGCACATCA-------TGC--ACCTCCCA--TGTTGCACTC  188

seq1  ACAGATGGCCTTAGCTAAACTAAGAGAAACCAAAATAAAATTGGGGAAAA  447
           |  |  || ||   |         |||||| | ||      ||| 
seq2  -----TTTC--TACCTCCTC--------CCCAAAAGAGAA-----AAAAG  218

seq1  AACAAAAACAAACAAACAAACAAACAAA  475
      ||  ||||||||||||||||||||||||
seq2  AAATAAAACAAACAAACAAACAAACAAA  246