BAC Information

Click to search

BAC

Clone NameB6Ng01-097B23
Chromosome14 (Build37)
Map Location 4,467,707 - 4,617,652
singlet/doubletdoublet
Overlap geneLOC100041139, LOC100041151, LOC100041177, LOC100041162
Upstream geneLOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik
Downstream geneLOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097B23.bB6Ng01-097B23.g
ACCDH907577DH907578
length1,1161,139
definitionDH907577|Mus musculus domesticus DNA, BAC clone: B6Ng01-097B23, 5' end.DH907578|Mus musculus domesticus DNA, BAC clone: B6Ng01-097B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,616,521 - 4,617,652)(4,467,707 - 4,468,834)
sequence
gaattcctaaaagagcagaaaagctatcttccagctggtttgctaagcta
tgttcctcttcctaaccaccattgtcagacatatgccacactccctgtta
caggcccggttgccttgaaatgtataagctgcctcagacataaagatatg
gggaacattgtcaggtcatatcagatgggacgcagggaaatgctgaagtt
catagtgcttagcactatcaagcactaattaatcgtgtgtcttcaaatcc
aaagtgtctgagtcctcaccacatgacatgaccaggggagcatccttctc
tgttcttttcatcagagactcaagttacctacagtaatctggaagatgaa
gtgcttcaactcccttccatgaaaggacacactgttattctcatagtgcc
cactcctgacattttttgccactcaaaatgaaattaaatagctcccagaa
aagtagctgcaggtttgtcaattcctggctctgtcaaactaatcatcaga
aattcttgactctttttctgacattggcaaagtccaaggcttcagcttgt
aagacctactcctggaaggcccagctcaagcctacctctaccaggaagtt
ccccaactctgcccaggactcactgtgccttctccagaaccatttccttc
ttcctttttcatgagaaaggattccctcttccttctctgttggtctggtc
tctccttcatcgccattctctttctgaaatagcctgagcagccaggaaaa
cattcctgctggtgaacccagagcaaaacagaagggatgaaccacaggca
gttgctgtcaccacaacacaggtgacaacacagaagattctagttctctc
ctagatacaagagattctccaaggaaggcattactgatgatgtcactagc
aactgccatgacctacctgttaactagttctgcccagcttgtccttttct
aggtgctctcctggagcctctcatggaaccgatggatccccttggcaacc
tctcatacgaagctgagaatctactgctcattagatgtcatgtgcttgag
ggggacgtgttagactctgacatgcttaagaaatttgtggcacccaaact
ctaaggaccttggatg
gaattctttcctgaggtttgattttgcattgtatgttcacttttaaagcg
gcttgctgatctcttcgtggaccagagatggaggaagtactccactctgt
ttagtttttcaccacaagattaattcaggtcaatctcatctctcaggttt
gttcttatagtggttttgaaggtttcaaaggaaaggttgctgcatggatt
gatatgaagctgcagatgtttgcaagtgagttagagagtgacttctacaa
gcagatcagattggtgaccctggtcttctggctgttaggggaacaccact
ttggccactgattcaaagaatgttctgttgagagcatttgctaagggggt
tctgatgatggcaacttgctgatgtcagggaactccagggacatgaactc
actgaatcactgctttcattggaaaagtaacttttggccataacaattct
ctgctggctaacttaatgtcaacttggcaccagctgaagttatctgagag
gagggaacctcaatggagaaaatgccaacacaaaatcatgctgttggtac
acctataggacattttcttaattagattgatggatgtgggcccagcccat
tgtgggtggggccgtcacttgcctggtggtcctaggttctataagaaatt
aggttgagcaagccataaggagcaagccagtaagcagcattcctcagtgg
cctctgcatcagctcctgtctccagatttctatactgtttgagttcctgt
ccagattccttccatgatgagctgtattgtggaagtaaaagtcaaataaa
ctttccttcccaagatactttggttatgatattgccacaatagcagctct
aagaagaaattccaattaaaaaaagtcatttaacataccaactaataaat
ctattaagatggatggtgggcacatgatagcaagtaggactctaaatgtt
aatttctatgattagggtttgctaatccttatgcaccaaggaagcggaaa
aatcaaccacgatgacatctgacttctacccataacctggtgagcactga
atatcacaaacgagctatagagatcagggccttggctgtatgaatagagt
ataggtcatgcatctcggtggttctctcacttccgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4616521_4617652
seq2: B6Ng01-097B23.b_44_1159 (reverse)

seq1  CATCCACAGTCCCTAGAGTTTTGGGTGCCAACAAAATCTCTTAAGCATGT  50
      ||||||  |||| ||||| |||||||||||   |||| ||||||||||||
seq2  CATCCAAGGTCCTTAGAG-TTTGGGTGCCA--CAAATTTCTTAAGCATGT  47

seq1  CAGAGTCCTAACCAACGTTCCCCCTCAAAAGCACATGACATCTAATGAAG  100
      |||||| |||||  ||| ||||||||  ||||||||||||||||||| ||
seq2  CAGAGT-CTAAC--ACG-TCCCCCTC--AAGCACATGACATCTAATG-AG  90

seq1  CAGTAGAATTCTCCAGCTTTGGAAGGAGAGGTTGCCAAAGGGGATCCCAC  150
      |||||| ||||| |||| || | | ||||||||||| ||||||||||  |
seq2  CAGTAG-ATTCT-CAGC-TTCGTATGAGAGGTTGCC-AAGGGGATCCATC  136

seq1  GGGTCCATGAGAGGCTCCAGGAGAGGCACCCCAGAAAAGGACCAAGCTGG  200
      || ||||||||||||||||||||| ||| || ||||||||| ||||||||
seq2  GGTTCCATGAGAGGCTCCAGGAGA-GCA-CCTAGAAAAGGA-CAAGCTGG  183

seq1  GCAGAACTAGTTAACAGGTAGGTCATGGCAGTTGCTAGTGACATCATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTAGTTAACAGGTAGGTCATGGCAGTTGCTAGTGACATCATCAG  233

seq1  TAATGCCTTCCTTGGAGAATCTCTTGTATCTAGGAGAGAACTAGAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCTTCCTTGGAGAATCTCTTGTATCTAGGAGAGAACTAGAATCTT  283

seq1  CTGTGTTGTCACCTGTGTTGTGGTGACAGCAACTGCCTGTGGTTCATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGTCACCTGTGTTGTGGTGACAGCAACTGCCTGTGGTTCATCCC  333

seq1  TTCTG-TTTGCTCTGGGTTCACCAGCAGGAATGTTTTCCTGGCTGCTCAG  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTGCTCTGGGTTCACCAGCAGGAATGTTTTCCTGGCTGCTCAG  383

seq1  GCTATTTCAGAAAGAGAATGGCGATGAAGGAGAGACCAGACCAACAGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCAGAAAGAGAATGGCGATGAAGGAGAGACCAGACCAACAGAGA  433

seq1  AGGAAGAGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATGGTTCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATGGTTCTGG  483

seq1  AGAAGGCACAGTGAGTCCTGGGCAGAGTTGGGGAACTTCCTGGTAGAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCACAGTGAGTCCTGGGCAGAGTTGGGGAACTTCCTGGTAGAGGT  533

seq1  AGGCTTGAGCTGGGCCTTCCAGGAGTAGGTCTTACAAGCTGAAGCCTTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGAGCTGGGCCTTCCAGGAGTAGGTCTTACAAGCTGAAGCCTTGG  583

seq1  ACTTTGCCAATGTCAGAAAAAGAGTCAAGAATTTCTGATGATTAGTTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCAATGTCAGAAAAAGAGTCAAGAATTTCTGATGATTAGTTTGA  633

seq1  CAGAGCCAGGAATTGACAAACCTGCAGCTACTTTTCTGGGAGCTATTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGGAATTGACAAACCTGCAGCTACTTTTCTGGGAGCTATTTAA  683

seq1  TTTCATTTTGAGTGGCAAAAAATGTCAGGAGTGGGCACTATGAGAATAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTGAGTGGCAAAAAATGTCAGGAGTGGGCACTATGAGAATAAC  733

seq1  AGTGTGTCCTTTCATGGAAGGGAGTTGAAGCACTTCATCTTCCAGATTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCCTTTCATGGAAGGGAGTTGAAGCACTTCATCTTCCAGATTAC  783

seq1  TGTAGGTAACTTGAGTCTCTGATGAAAAGAACAGAGAAGGATGCTCCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTAACTTGAGTCTCTGATGAAAAGAACAGAGAAGGATGCTCCCCT  833

seq1  GGTCATGTCATGTGGTGAGGACTCAGACACTTTGGATTTGAAGACACACG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGTCATGTGGTGAGGACTCAGACACTTTGGATTTGAAGACACACG  883

seq1  ATTAATTAGTGCTTGATAGTGCTAAGCACTATGAACTTCAGCATTTCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTAGTGCTTGATAGTGCTAAGCACTATGAACTTCAGCATTTCCCT  933

seq1  GCGTCCCATCTGATATGACCTGACAATGTTCCCCATATCTTTATGTCTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCCATCTGATATGACCTGACAATGTTCCCCATATCTTTATGTCTGA  983

seq1  GGCAGCTTATACATTTCAAGGCAACCGGGCCTGTAACAGGGAGTGTGGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTTATACATTTCAAGGCAACCGGGCCTGTAACAGGGAGTGTGGCA  1033

seq1  TATGTCTGACAATGGTGGTTAGGAAGAGGAACATAGCTTAGCAAACCAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGACAATGGTGGTTAGGAAGAGGAACATAGCTTAGCAAACCAGC  1083

seq1  TGGAAGATAGCTTTTCTGCTCTTTTAGGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  TGGAAGATAGCTTTTCTGCTCTTTTAGGAATTC  1116

seq1: chr14_4467707_4468834
seq2: B6Ng01-097B23.g_67_1205

seq1  GAATTCTTTCCTGAGGTTTGATTTTGCATTGTATGTTCACTTTTAAAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTGAGGTTTGATTTTGCATTGTATGTTCACTTTTAAAGCG  50

seq1  GCTTGCTGATCTCTTCGTGGACCAGAGATGGAGGAAGTACTCCACTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGATCTCTTCGTGGACCAGAGATGGAGGAAGTACTCCACTCTGT  100

seq1  TTAGTTTTTCACCACAAGATTAATTCAGGTCAATCTCATCTCTCAGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTCACCACAAGATTAATTCAGGTCAATCTCATCTCTCAGGTTT  150

seq1  GTTCTTATAGTGGTTTTGAAGGTTTCAAAGGAAAGGTTGCTGCATGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATAGTGGTTTTGAAGGTTTCAAAGGAAAGGTTGCTGCATGGATT  200

seq1  GATATGAAGCTGCAGATGTTTGCAAGTGAGTTAGAGAGTGACTTCTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAAGCTGCAGATGTTTGCAAGTGAGTTAGAGAGTGACTTCTACAA  250

seq1  GCAGATCAGATTGGTGACCCTGGTCTTCTGGCTGTTAGGGGAACACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCAGATTGGTGACCCTGGTCTTCTGGCTGTTAGGGGAACACCACT  300

seq1  TTGGCCACTGATTCAAAGAATGTTCTGTTGAGAGCATTTGCTAAGGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCACTGATTCAAAGAATGTTCTGTTGAGAGCATTTGCTAAGGGGGT  350

seq1  TCTGATGATGGCAACTTGCTGATGTCAGGGAACTCCAGGGACATGAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGATGGCAACTTGCTGATGTCAGGGAACTCCAGGGACATGAACTC  400

seq1  ACTGAATCACTGCTTTCATTGGAAAAGTAACTTTTGGCCATAACAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCACTGCTTTCATTGGAAAAGTAACTTTTGGCCATAACAATTCT  450

seq1  CTGCTGGCTAACTTAATGTCAACTTGGCACCAGCTGAAGTTATCTGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCTAACTTAATGTCAACTTGGCACCAGCTGAAGTTATCTGAGAG  500

seq1  GAGGGAACCTCAATGGAGAAAATGCCAACACAAAATCATGCTGTTGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACCTCAATGGAGAAAATGCCAACACAAAATCATGCTGTTGGTAC  550

seq1  ACCTATAGGACATTTTCTTAATTAGATTGATGGATGTGGGCCCAGCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAGGACATTTTCTTAATTAGATTGATGGATGTGGGCCCAGCCCAT  600

seq1  TGTGGGTGGGGCCGTCACTTGCCTGGTGGTCCTAGGTTCTATAAGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGGGCCGTCACTTGCCTGGTGGTCCTAGGTTCTATAAGAAATT  650

seq1  AGGTTGAGCAAGCCATAAGGAGCAAGCCAGTAAGCAGCATTCCTCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAGCAAGCCATAAGGAGCAAGCCAGTAAGCAGCATTCCTCAGTGG  700

seq1  CCTCTGCATCAGCTCCTGTCTCCAGATTTCTATACTGTTTGAGTTCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCATCAGCTCCTGTCTCCAGATTTCTATACTGTTTGAGTTCCTGT  750

seq1  CCAGATTCCTTCCATGATGAGCTGTATTGTGGAAGTAAAAGTCAAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCCTTCCATGATGAGCTGTATTGTGGAAGTAAAAGTCAAATAAA  800

seq1  CTTTCCTTCCCAAGTTACTTTGGTTATGATATTGCCACAATAGCAGCTCT  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTCCCAAGATACTTTGGTTATGATATTGCCACAATAGCAGCTCT  850

seq1  AAGAAAGAAATTCCAATTAAAAAAAGTCATTTAACATACCAACTAATAAA  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAG-AAGAAATTCCAATTAAAAAAAGTCATTTAACATACCAACTAATAAA  899

seq1  TCTATTAAGATGTAT-GTTGGCACATGATAGCAAGTAGGACTCTAAATGT  949
      |||||||||||| || || |||||||||||||||||||||||||||||||
seq2  TCTATTAAGATGGATGGTGGGCACATGATAGCAAGTAGGACTCTAAATGT  949

seq1  TAATTTCTATGATAAGGGTTTG-TTATCCCTATGCACCAAGGAAGTG--A  996
      ||||||||||||| |||||||| | |||| ||||||||||||||| |  |
seq2  TAATTTCTATGATTAGGGTTTGCTAATCCTTATGCACCAAGGAAGCGGAA  999

seq1  AAATCAACCACAGTGACATTCTGACTCATACCCCATACCT-GTGAGCACA  1045
      |||||||||||  ||||| |||||||  |||||   |||| |||||||| 
seq2  AAATCAACCACGATGACA-TCTGACTTCTACCCATAACCTGGTGAGCACT  1048

seq1  G-ATATCAAAAACAGAGC-AGAGAGATCAGGCCCT--GCTGACAGCATAC  1091
      | |||||| |||| |||| | |||||||||| |||  ||||   | ||| 
seq2  GAATATCACAAAC-GAGCTATAGAGATCAGGGCCTTGGCTGTATGAATAG  1097

seq1  AGTAAAGG-CAT-CAT-TCTGTG--TCTCTCACTTCCCTCTG  1128
      |||| ||| ||| ||| || |||  |||||||||||| ||||
seq2  AGTATAGGTCATGCATCTCGGTGGTTCTCTCACTTCCGTCTG  1139