BAC Information

Click to search

BAC

Clone NameB6Ng01-097L17
Chromosome14 (Build37)
Map Location 80,804,065 - 80,960,044
singlet/doubletdoublet
Overlap geneLOC672828
Upstream geneMtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097L17.bB6Ng01-097L17.g
ACCDH908021DH908022
length1,0051,039
definitionDH908021|Mus musculus domesticus DNA, BAC clone: B6Ng01-097L17, 5' end.DH908022|Mus musculus domesticus DNA, BAC clone: B6Ng01-097L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,804,065 - 80,804,616)(80,958,999 - 80,960,044)
sequence
gaattcagattccctgcatcatgttgattacttaagaatcgtcctgtgca
tacatacaatgacaatgtggtcccattgccaaggacaaaacccatacatt
ccactgaatatggagaagtcaagctgtgtctacatggagccttcaactct
atattctagtctctctataggtcaatgaaagaaaaatgtggacaccaacc
tacccacaaaacctttgacctaaaatctgtcctgtctgcataatatacta
aggcaatgggggcacagagtttatgggagtagccaactgatgtctgactt
gatctaagggacactgcaagagaagaacccatacctgacacggctggagt
aatcaagaacctgagactatatagctgagagacagggtaagaccaaacac
tactggtcatgaaaaaagtatgagtaaaatgactcctaatgatattttgc
tatatccatagataagggtcttatccagtcatcaccagagaagcttcctc
ctgtacagatatagatgagaacagatacagagacccatagccaaacatga
aatggagagagattctaaatggcaggcctccatcaaatccctcctctcag
agctcaggaaatcctgtagagattataaaagccagagggaatggaggata
ccaggagaacaaagtcctctgaatcaaataagcaagatggatatgagctt
acagagatcaaagaagtaagcatcgtgtctacatgattgatggggaatgg
cccagcccattgtaggtgattccatccctgggcttgtacctgagttctat
aagaaagcaggctgaagcaagccagggaagcaaaccagttaagtggcaca
cttccatgtcctttgcaccaactccttcctccagtgtcctacctaccctg
tttgagttccttgtcctgacttccttcagtgactaatggtgatatggaag
ttgtaagctgaatacttctttttttcccccagcttgcattttggttatgg
tattt
gaattctcattgtggcttagcaaaaagtgacttagcacatgtgtttccat
aattacgaagcgtcagagtgctcactggctctgaaacagagtcgccagtg
tgacaactcttggtgccagtatgagaggcaatcagatgaggcgggaacga
acaccctctgcctcagcaatctgctaatgctcaaggcaacctttcctctg
ggaacgcttgtctgaggtgggcattcatgctcagattattcattgcttta
tttctttttaactaatgggggaagaagagtgaggtgaatgcttattgggt
aactacaattcctgcagcacttactaaggggtctggggcttgacatatac
ttcgtaaaaagagaaagaaggtctaggaatgcaaattctcctctagttct
gtgcaggtcaataagacaaccttgctaaacttcagacagctttataattc
tcacaaaatcctgcccttctcctaggcattagcaagccttggccatccct
tttccactctgtcctatagatgttctgtggaagcactcagctctcagggc
cacagtttctcttgtttctagtctcatgcacgtgggatcaggcaccccag
agtctcttgctatgtagtctctaacctagtaacacaatgctctgctgctc
ttgtagtcagtaactgtagtatgctcactttcgttgctatcagacttcat
ggcgtgactatttcacaatgcacccatgatactcaggataggattttggg
ttagaactattgacagtgtatgtacattctaagacatatctttgggagca
aataaatatgcatgacttttagatatatacttgtttgatgagcttggaga
ctatgattgactaggagcctacatggctagatcctgtacttggtaaattc
tttatataattcatatgatagagatgtataaagttaaacccattagagtc
ataactttagacactgagtctagagaccgagagggatctgacttgaaatt
tcctcctgaacactagctctaaatactaaaatggcagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80804065_80804616
seq2: B6Ng01-097L17.b_50_601

seq1  GAATTCAGATTCCCTGCATCATGTTGATTACTTAAGAATCGTCCTGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCCCTGCATCATGTTGATTACTTAAGAATCGTCCTGTGCA  50

seq1  TACATACAATGACAATGTGGTCCCATTGCCAAGGACAAAACCCATACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACAATGACAATGTGGTCCCATTGCCAAGGACAAAACCCATACATT  100

seq1  CCACTGAATATGGAGAAGTCAAGCTGTGTCTACATGGAGCCTTCAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAATATGGAGAAGTCAAGCTGTGTCTACATGGAGCCTTCAACTCT  150

seq1  ATATTCTAGTCTCTCTATAGGTCAATGAAAGAAAAATGTGGACACCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTAGTCTCTCTATAGGTCAATGAAAGAAAAATGTGGACACCAACC  200

seq1  TACCCACAAAACCTTTGACCTAAAATCTGTCCTGTCTGCATAATATACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACAAAACCTTTGACCTAAAATCTGTCCTGTCTGCATAATATACTA  250

seq1  AGGCAATGGGGGCACAGAGTTTATGGGAGTAGCCAACTGATGTCTGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGGGGGCACAGAGTTTATGGGAGTAGCCAACTGATGTCTGACTT  300

seq1  GATCTAAGGGACACTGCAAGAGAAGAACCCATACCTGACACGGCTGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAGGGACACTGCAAGAGAAGAACCCATACCTGACACGGCTGGAGT  350

seq1  AATCAAGAACCTGAGACTATATAGCTGAGAGACAGGGTAAGACCAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAACCTGAGACTATATAGCTGAGAGACAGGGTAAGACCAAACAC  400

seq1  TACTGGTCATGAAAAAAGTATGAGTAAAATGACTCCTAATGATATTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTCATGAAAAAAGTATGAGTAAAATGACTCCTAATGATATTTTGC  450

seq1  TATATCCATAGATAAGGGTCTTATCCAGTCATCACCAGAGAAGCTTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCATAGATAAGGGTCTTATCCAGTCATCACCAGAGAAGCTTCCTC  500

seq1  CTGTACAGATATAGATGAGAACAGATACAGAGACCCATAGCCAAACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGATATAGATGAGAACAGATACAGAGACCCATAGCCAAACATGA  550

seq1  AA  552
      ||
seq2  AA  552

seq1: chr14_80958999_80960044
seq2: B6Ng01-097L17.g_70_1108 (reverse)

seq1  GTCTGACATTTTAGTACTCTGAGAGCTAGTGTTCAGGGAGGAAATTTTCA  50
      ||||| ||||||||||   | |||||||||||||| |||||||| |||||
seq2  GTCTGCCATTTTAGTA--TTTAGAGCTAGTGTTCA-GGAGGAAA-TTTCA  46

seq1  AGTCAGATCCCTCTCGGTCTTCTAGGCTCAGTGTCTAAAGTTATGACTCT  100
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  AGTCAGATCCCTCTCGGTC-TCTAGACTCAGTGTCTAAAGTTATGACTCT  95

seq1  AAATTGGGTTTAACTTTTATACATCTCTATCATATTGATTATATAATGAA  150
      ||  |||||||||| ||||||||||||||||||||  ||||||||| |||
seq2  AA--TGGGTTTAAC-TTTATACATCTCTATCATATGAATTATATAAAGAA  142

seq1  TTTACCCATGTACAGGATCTTAGCCATGTAGGCTCCTAGTCAATCATAGT  200
      |||| ||| |||||||||| ||||||||||||||||||||||||||||||
seq2  TTTA-CCAAGTACAGGATC-TAGCCATGTAGGCTCCTAGTCAATCATAGT  190

seq1  CTCCAAGCTCATC-AACAAGTATATATCTAAAAGTCATGCATATTTATTT  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCTCATCAAACAAGTATATATCTAAAAGTCATGCATATTTATTT  240

seq1  GCTCCCAAAGATATGTCTTAGAATGTACATACACTGTCAATAGTTCTAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAAAGATATGTCTTAGAATGTACATACACTGTCAATAGTTCTAAC  290

seq1  CC-AAATCCTATCCTGAGTATCATGGGTGCATTGTGAAATAGTCACGCCA  348
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCCTATCCTGAGTATCATGGGTGCATTGTGAAATAGTCACGCCA  340

seq1  TGAAGTCTGATAGCAACG-AAGTGAGCATACTACAGTTACTGACTACAAG  397
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAAGTCTGATAGCAACGAAAGTGAGCATACTACAGTTACTGACTACAAG  390

seq1  AGCAGCAGAGCATTGTGTTACTAGGTTAGAGACTACATAGCAAGAGACTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGAGCATTGTGTTACTAGGTTAGAGACTACATAGCAAGAGACTC  440

seq1  TGGGGTGCCTGATCCCACGTGCATGAGACTAGAAACAAGAGAAACTGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGCCTGATCCCACGTGCATGAGACTAGAAACAAGAGAAACTGTGG  490

seq1  CCCTGAGAGCTGAGTGCTTCCACAGAACATCTATAGGACAGAGTGGAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGAGCTGAGTGCTTCCACAGAACATCTATAGGACAGAGTGGAAAA  540

seq1  GGGATGGCCAAGGCTTGCTAATGCCTAGGAGAAGGGCAGGATTTTGTGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCCAAGGCTTGCTAATGCCTAGGAGAAGGGCAGGATTTTGTGAG  590

seq1  AATTATAAAGCTGTCTGAAGTTTAGCAAGGTTGTCTTATTGACCTGCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAGCTGTCTGAAGTTTAGCAAGGTTGTCTTATTGACCTGCACA  640

seq1  GAACTAGAGGAGAATTTGCATTCCTAGACCTTCTTTCTCTTTTTACGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGAGGAGAATTTGCATTCCTAGACCTTCTTTCTCTTTTTACGAAG  690

seq1  TATATGTCAAGCCCCAGACCCCTTAGTAAGTGCTGCAGGAATTGTAGTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTCAAGCCCCAGACCCCTTAGTAAGTGCTGCAGGAATTGTAGTTA  740

seq1  CCCAATAAGCATTCACCTCACTCTTCTTCCCCCATTAGTTAAAAAGAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAAGCATTCACCTCACTCTTCTTCCCCCATTAGTTAAAAAGAAAT  790

seq1  AAAGCAATGAATAATCTGAGCATGAATGCCCACCTCAGACAAGCGTTCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGAATAATCTGAGCATGAATGCCCACCTCAGACAAGCGTTCCC  840

seq1  AGAGGAAAGGTTGCCTTGAGCATTAGCAGATTGCTGAGGCAGAGGGTGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGGTTGCCTTGAGCATTAGCAGATTGCTGAGGCAGAGGGTGTT  890

seq1  CGTTCCCGCCTCATCTGATTGCCTCTCATACTGGCACCAAGAGTTGTCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCCGCCTCATCTGATTGCCTCTCATACTGGCACCAAGAGTTGTCAC  940

seq1  ACTGGCGACTCTGTTTCAGAGCCAGTGAGCACTCTGACGCTTCGTAATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCGACTCTGTTTCAGAGCCAGTGAGCACTCTGACGCTTCGTAATTA  990

seq1  TGGAAACACATGTGCTAAGTCACTTTTTGCTAAGCCACGATGAGAATTC  1046
      |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGAAACACATGTGCTAAGTCACTTTTTGCTAAGCCACAATGAGAATTC  1039